Wall clock time and date at job start Thu Apr 9 2020 12:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47347 * 2 1 4 4 C 1.46494 * 119.99741 * 89.99874 * 3 2 1 5 5 C 1.53005 * 109.46777 * 90.00374 * 4 3 2 6 6 H 1.08995 * 109.47448 * 304.99480 * 5 4 3 7 7 C 1.53001 * 109.47080 * 65.00298 * 5 4 3 8 8 C 1.53002 * 109.46893 * 184.99600 * 5 4 3 9 9 C 1.50706 * 109.47153 * 174.99718 * 8 5 4 10 10 H 1.07998 * 119.99503 * 0.02562 * 9 8 5 11 11 C 1.37871 * 120.00434 * 180.02562 * 9 8 5 12 12 N 1.31516 * 119.99826 * 359.72891 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72558 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72681 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72491 * 13 11 9 17 17 C 1.39674 * 119.99984 * 270.00299 * 3 2 1 18 18 C 1.38910 * 120.07196 * 179.71577 * 17 3 2 19 19 C 1.38105 * 119.92074 * 179.76863 * 18 17 3 20 20 C 1.38281 * 120.07623 * 0.51626 * 19 18 17 21 21 C 1.38280 * 120.15327 * 359.73782 * 20 19 18 22 22 C 1.38111 * 120.07247 * 0.02562 * 21 20 19 23 23 H 1.09004 * 109.47120 * 299.99714 * 1 2 3 24 24 H 1.08998 * 109.47744 * 59.99567 * 1 2 3 25 25 H 1.08997 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47120 * 240.00286 * 2 1 3 27 27 H 1.08998 * 109.47744 * 120.00433 * 2 1 3 28 28 H 1.08997 * 109.47647 * 330.00577 * 4 3 2 29 29 H 1.09001 * 109.47420 * 210.00096 * 4 3 2 30 30 H 1.09000 * 109.46932 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.46866 * 299.99538 * 7 5 4 32 32 H 1.09000 * 109.47309 * 59.99633 * 7 5 4 33 33 H 1.09004 * 109.47178 * 55.00508 * 8 5 4 34 34 H 1.08993 * 109.47411 * 295.00191 * 8 5 4 35 35 H 0.97000 * 120.00236 * 0.27947 * 12 11 9 36 36 H 1.08003 * 120.03718 * 0.02562 * 18 17 3 37 37 H 1.08007 * 119.95972 * 180.25827 * 19 18 17 38 38 H 1.08009 * 119.92514 * 179.72567 * 20 19 18 39 39 H 1.08000 * 119.97003 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.04016 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.7076 1.8313 1.7103 6 1 3.9003 0.7595 1.7549 7 6 4.6624 2.4801 0.7061 8 6 3.9272 2.4469 3.0937 9 6 5.3114 2.1049 3.5817 10 1 5.9688 1.5086 2.9664 11 6 5.7385 2.5533 4.8135 12 7 4.9398 3.2840 5.5605 13 14 7.4546 2.1301 5.4181 14 1 7.6699 2.7325 6.7583 15 1 7.5972 0.6547 5.5098 16 1 8.4608 2.6665 4.4668 17 6 2.2511 2.0397 -1.2096 18 6 2.7086 3.3513 -1.2114 19 6 2.9422 3.9978 -2.4092 20 6 2.7112 3.3445 -3.6059 21 6 2.2508 2.0406 -3.6078 22 6 2.0196 1.3865 -2.4135 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.5818 1.6877 2.0284 29 1 2.0956 3.1410 1.1385 30 1 5.6918 2.3083 1.0205 31 1 4.5059 2.0416 -0.2794 32 1 4.4696 3.5520 0.6617 33 1 3.1882 2.0496 3.7897 34 1 3.8214 3.5298 3.0305 35 1 4.0488 3.5040 5.2465 36 1 2.8853 3.8635 -0.2771 37 1 3.3019 5.0162 -2.4113 38 1 2.8905 3.8539 -4.5412 39 1 2.0709 1.5333 -4.5441 40 1 1.6597 0.3682 -2.4156 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602600301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:55 Heat of formation + Delta-G solvation = 10.987566 kcal Electronic energy + Delta-G solvation = -18156.004324 eV Core-core repulsion = 15548.915345 eV Total energy + Delta-G solvation = -2607.088979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.67531 -36.88518 -34.84574 -32.51504 -31.13773 -30.45210 -28.79671 -26.51562 -25.61418 -23.54609 -22.84322 -21.81192 -20.46296 -19.06712 -17.64379 -16.66063 -15.66293 -15.27811 -14.64699 -14.50199 -13.97626 -13.76182 -13.68001 -13.25000 -13.05654 -12.93464 -12.48198 -12.14277 -11.80732 -11.67552 -11.37255 -11.23272 -11.07811 -11.03403 -10.73434 -10.59258 -10.51371 -10.11142 -9.79991 -9.55322 -9.48436 -8.68528 -8.51943 -8.31176 -6.98082 -6.33479 -4.02089 1.65182 1.84083 3.35305 3.44685 3.46288 3.64919 4.11876 4.56048 4.92318 5.03646 5.17502 5.25347 5.33178 5.39369 5.42780 5.51317 5.63869 5.66697 5.75361 5.77101 5.86818 5.93453 6.00252 6.15710 6.19167 6.22125 6.35424 6.49783 6.54341 6.68259 6.81791 6.87092 6.98421 7.07165 7.10270 7.36807 7.52858 7.57077 7.79802 8.24776 8.48607 8.91160 9.69064 11.06655 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027413 B = 0.005362 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.175405 B = 5220.835519 C = 5787.989399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.621 5.621 4 C 0.124 3.876 5 C -0.094 4.094 6 H 0.057 0.943 7 C -0.129 4.129 8 C 0.016 3.984 9 C -0.594 4.594 10 H 0.048 0.952 11 C 0.014 3.986 12 N -0.915 5.915 13 Si 1.066 2.934 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.288 1.288 17 C 0.228 3.772 18 C -0.192 4.192 19 C -0.076 4.076 20 C -0.191 4.191 21 C -0.078 4.078 22 C -0.208 4.208 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.005 0.995 34 H 0.007 0.993 35 H 0.268 0.732 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -3.620 -15.230 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.330 5.330 4 C 0.001 3.999 5 C -0.114 4.114 6 H 0.076 0.924 7 C -0.186 4.186 8 C -0.022 4.022 9 C -0.632 4.632 10 H 0.067 0.933 11 C -0.190 4.190 12 N -0.551 5.551 13 Si 0.895 3.105 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.215 1.215 17 C 0.125 3.875 18 C -0.215 4.215 19 C -0.095 4.095 20 C -0.211 4.211 21 C -0.097 4.097 22 C -0.231 4.231 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.577 -3.519 -13.767 15.658 hybrid contribution -1.032 -0.256 -1.241 1.634 sum -7.609 -3.775 -15.008 17.245 Atomic orbital electron populations 1.22219 0.96735 1.01572 1.02352 1.21345 0.93618 0.83041 1.02558 1.46773 1.70096 1.12837 1.03250 1.21739 0.97722 0.96853 0.83567 1.21494 0.92309 1.00138 0.97418 0.92449 1.21838 1.00342 0.99225 0.97218 1.19225 0.97390 0.95199 0.90375 1.22006 0.99686 1.36507 1.04991 0.93327 1.25806 1.05010 0.94357 0.93790 1.70788 1.09336 1.35567 1.39456 0.83578 0.74653 0.76024 0.76254 1.20813 1.21543 1.21491 1.17848 0.92410 0.91397 0.85808 1.20954 1.07229 0.94279 0.98996 1.20868 0.97426 0.99090 0.92066 1.20792 1.06889 0.95858 0.97546 1.20783 0.97398 0.94602 0.96870 1.20628 1.10594 1.00568 0.91293 0.92484 0.92548 0.92100 0.91077 0.90709 0.91421 0.91257 0.92437 0.94194 0.93790 0.97713 0.97470 0.92203 0.85429 0.86615 0.87088 0.86872 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 37.16 0.38 -1.46 16 2 C 0.12 1.47 5.88 -4.04 -0.02 1.45 16 3 N -0.62 -9.28 2.47 -171.75 -0.42 -9.71 16 4 C 0.12 2.09 4.95 -4.04 -0.02 2.07 16 5 C -0.09 -1.90 2.54 -90.62 -0.23 -2.13 16 6 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 7 C -0.13 -2.55 7.45 37.16 0.28 -2.27 16 8 C 0.02 0.39 3.76 -27.88 -0.10 0.29 16 9 C -0.59 -16.72 8.41 -34.44 -0.29 -17.01 16 10 H 0.05 1.36 7.06 -52.49 -0.37 0.99 16 11 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 12 N -0.91 -28.02 13.65 55.43 0.76 -27.26 16 13 Si 1.07 25.47 29.90 -169.99 -5.08 20.39 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.23 3.43 5.37 -83.79 -0.45 2.98 16 18 C -0.19 -2.93 7.16 -39.38 -0.28 -3.21 16 19 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 20 C -0.19 -2.40 10.04 -39.55 -0.40 -2.80 16 21 C -0.08 -0.97 10.04 -39.61 -0.40 -1.36 16 22 C -0.21 -2.80 9.21 -39.38 -0.36 -3.16 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.81 6.20 -51.93 -0.32 0.49 16 27 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 28 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.07 1.17 6.19 -51.93 -0.32 0.85 16 30 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 31 H 0.04 0.73 5.86 -51.93 -0.30 0.43 16 32 H 0.04 0.84 6.67 -51.93 -0.35 0.50 16 33 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 34 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 35 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 36 H 0.13 2.04 4.42 -52.48 -0.23 1.81 16 37 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.11 1.16 8.06 -52.48 -0.42 0.73 16 39 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.39 6.14 -52.49 -0.32 1.07 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -30.35 313.50 -8.72 -39.07 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.30 Total: 0.54 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -2.40 Total: -27.75 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.33 Total: -36.97 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.35 -8.72 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602600301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.061 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds