Wall clock time and date at job start Thu Apr 9 2020 12:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47347 * 2 1 4 4 C 1.46494 * 119.99741 * 89.99874 * 3 2 1 5 5 C 1.53005 * 109.46777 * 90.00374 * 4 3 2 6 6 H 1.08995 * 109.47448 * 304.99480 * 5 4 3 7 7 C 1.53001 * 109.47080 * 65.00298 * 5 4 3 8 8 C 1.53002 * 109.46893 * 184.99600 * 5 4 3 9 9 C 1.50706 * 109.47153 * 174.99718 * 8 5 4 10 10 H 1.07998 * 119.99503 * 0.02562 * 9 8 5 11 11 C 1.37871 * 120.00434 * 180.02562 * 9 8 5 12 12 N 1.31516 * 119.99826 * 359.72891 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72558 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72681 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72491 * 13 11 9 17 17 C 1.39674 * 119.99984 * 270.00299 * 3 2 1 18 18 C 1.38910 * 120.07196 * 179.71577 * 17 3 2 19 19 C 1.38105 * 119.92074 * 179.76863 * 18 17 3 20 20 C 1.38281 * 120.07623 * 0.51626 * 19 18 17 21 21 C 1.38280 * 120.15327 * 359.73782 * 20 19 18 22 22 C 1.38111 * 120.07247 * 0.02562 * 21 20 19 23 23 H 1.09004 * 109.47120 * 299.99714 * 1 2 3 24 24 H 1.08998 * 109.47744 * 59.99567 * 1 2 3 25 25 H 1.08997 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47120 * 240.00286 * 2 1 3 27 27 H 1.08998 * 109.47744 * 120.00433 * 2 1 3 28 28 H 1.08997 * 109.47647 * 330.00577 * 4 3 2 29 29 H 1.09001 * 109.47420 * 210.00096 * 4 3 2 30 30 H 1.09000 * 109.46932 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.46866 * 299.99538 * 7 5 4 32 32 H 1.09000 * 109.47309 * 59.99633 * 7 5 4 33 33 H 1.09004 * 109.47178 * 55.00508 * 8 5 4 34 34 H 1.08993 * 109.47411 * 295.00191 * 8 5 4 35 35 H 0.97000 * 120.00236 * 0.27947 * 12 11 9 36 36 H 1.08003 * 120.03718 * 0.02562 * 18 17 3 37 37 H 1.08007 * 119.95972 * 180.25827 * 19 18 17 38 38 H 1.08009 * 119.92514 * 179.72567 * 20 19 18 39 39 H 1.08000 * 119.97003 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.04016 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.7076 1.8313 1.7103 6 1 3.9003 0.7595 1.7549 7 6 4.6624 2.4801 0.7061 8 6 3.9272 2.4469 3.0937 9 6 5.3114 2.1049 3.5817 10 1 5.9688 1.5086 2.9664 11 6 5.7385 2.5533 4.8135 12 7 4.9398 3.2840 5.5605 13 14 7.4546 2.1301 5.4181 14 1 7.6699 2.7325 6.7583 15 1 7.5972 0.6547 5.5098 16 1 8.4608 2.6665 4.4668 17 6 2.2511 2.0397 -1.2096 18 6 2.7086 3.3513 -1.2114 19 6 2.9422 3.9978 -2.4092 20 6 2.7112 3.3445 -3.6059 21 6 2.2508 2.0406 -3.6078 22 6 2.0196 1.3865 -2.4135 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.5818 1.6877 2.0284 29 1 2.0956 3.1410 1.1385 30 1 5.6918 2.3083 1.0205 31 1 4.5059 2.0416 -0.2794 32 1 4.4696 3.5520 0.6617 33 1 3.1882 2.0496 3.7897 34 1 3.8214 3.5298 3.0305 35 1 4.0488 3.5040 5.2465 36 1 2.8853 3.8635 -0.2771 37 1 3.3019 5.0162 -2.4113 38 1 2.8905 3.8539 -4.5412 39 1 2.0709 1.5333 -4.5441 40 1 1.6597 0.3682 -2.4156 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602600301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:54 Heat of formation + Delta-G solvation = -3.792201 kcal Electronic energy + Delta-G solvation = -18156.645223 eV Core-core repulsion = 15548.915345 eV Total energy + Delta-G solvation = -2607.729878 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.80131 -38.17165 -36.44490 -34.39606 -32.30146 -31.47397 -30.02823 -28.45886 -26.97791 -25.17056 -24.15795 -22.98724 -21.73286 -20.55038 -19.08188 -18.44258 -16.82188 -16.38230 -16.06532 -15.80268 -15.62425 -15.28220 -14.94494 -14.52255 -14.45160 -14.07858 -13.79482 -13.45128 -13.31886 -13.08082 -12.94272 -12.83170 -12.48083 -12.34278 -12.06385 -12.00208 -11.96853 -11.74240 -11.48983 -11.24323 -10.85486 -10.53321 -10.48755 -9.72427 -8.66521 -8.10986 -6.35228 0.61705 0.79886 1.51096 1.59148 1.78399 2.21129 2.56686 3.07849 3.17703 3.85010 3.92787 4.10543 4.19514 4.20945 4.29262 4.40445 4.42515 4.51505 4.58084 4.61161 4.69870 4.79702 4.81284 4.84999 4.95280 5.01108 5.01764 5.20368 5.23318 5.27329 5.30947 5.39314 5.50252 5.57379 5.69527 5.82218 6.03156 6.09252 6.20881 6.41082 6.62039 6.68695 7.44755 8.74734 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027413 B = 0.005362 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.175405 B = 5220.835519 C = 5787.989399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.625 5.625 4 C 0.137 3.863 5 C -0.082 4.082 6 H 0.048 0.952 7 C -0.115 4.115 8 C 0.019 3.981 9 C -0.605 4.605 10 H 0.047 0.953 11 C -0.039 4.039 12 N -0.940 5.940 13 Si 1.113 2.887 14 H -0.283 1.283 15 H -0.270 1.270 16 H -0.271 1.271 17 C 0.209 3.791 18 C -0.215 4.215 19 C -0.085 4.085 20 C -0.191 4.191 21 C -0.078 4.078 22 C -0.211 4.211 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.043 0.957 33 H -0.012 1.012 34 H -0.011 1.011 35 H 0.255 0.745 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 -4.683 -17.365 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.009 4.009 3 N -0.335 5.335 4 C 0.014 3.986 5 C -0.102 4.102 6 H 0.066 0.934 7 C -0.172 4.172 8 C -0.018 4.018 9 C -0.643 4.643 10 H 0.065 0.935 11 C -0.236 4.236 12 N -0.578 5.578 13 Si 0.935 3.065 14 H -0.209 1.209 15 H -0.195 1.195 16 H -0.197 1.197 17 C 0.107 3.893 18 C -0.237 4.237 19 C -0.104 4.104 20 C -0.210 4.210 21 C -0.096 4.096 22 C -0.233 4.233 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.469 -4.594 -15.945 17.810 hybrid contribution -1.107 0.093 -0.676 1.300 sum -7.575 -4.501 -16.620 18.812 Atomic orbital electron populations 1.22133 0.95320 1.02797 1.01704 1.21517 0.94741 0.81719 1.02929 1.46720 1.70714 1.13653 1.02377 1.21365 0.95190 0.97122 0.84955 1.21318 0.95050 0.98925 0.94934 0.93356 1.21689 0.98571 0.99296 0.97610 1.19138 0.95688 0.94172 0.92843 1.22392 1.00917 1.35947 1.05070 0.93475 1.27321 1.08287 0.93660 0.94365 1.70919 1.09268 1.37410 1.40178 0.82978 0.70578 0.76956 0.75982 1.20882 1.19521 1.19683 1.18051 0.93350 0.91595 0.86289 1.20965 1.08831 0.94859 0.99046 1.21115 0.97332 0.99869 0.92049 1.21145 1.05742 0.96116 0.98043 1.21183 0.96137 0.94582 0.97715 1.20885 1.10119 1.01334 0.90959 0.93622 0.92634 0.89906 0.89624 0.91383 0.91260 0.91545 0.94723 0.92659 0.93810 0.99364 0.99288 0.93572 0.87143 0.85365 0.84636 0.83890 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.24 71.98 0.74 -2.45 16 2 C 0.11 2.67 5.88 86.38 0.51 3.18 16 3 N -0.63 -18.25 2.47 -697.30 -1.72 -19.97 16 4 C 0.14 4.71 4.95 86.38 0.43 5.14 16 5 C -0.08 -3.41 2.54 -10.79 -0.03 -3.44 16 6 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 7 C -0.11 -4.57 7.45 71.98 0.54 -4.04 16 8 C 0.02 0.99 3.76 29.85 0.11 1.11 16 9 C -0.61 -34.73 8.41 25.60 0.22 -34.52 16 10 H 0.05 2.67 7.06 -2.91 -0.02 2.65 16 11 C -0.04 -2.30 5.46 84.65 0.46 -1.83 16 12 N -0.94 -58.84 13.65 21.45 0.29 -58.55 16 13 Si 1.11 51.06 29.90 68.60 2.05 53.11 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 17 C 0.21 6.03 5.37 38.21 0.21 6.24 16 18 C -0.21 -6.43 7.16 22.40 0.16 -6.27 16 19 C -0.09 -2.19 10.04 22.25 0.22 -1.97 16 20 C -0.19 -4.24 10.04 22.29 0.22 -4.02 16 21 C -0.08 -1.67 10.04 22.25 0.22 -1.44 16 22 C -0.21 -5.12 9.21 22.40 0.21 -4.92 16 23 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.76 6.20 -2.38 -0.01 1.74 16 27 H 0.07 1.68 8.07 -2.39 -0.02 1.66 16 28 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 29 H 0.07 2.31 6.19 -2.39 -0.01 2.30 16 30 H 0.03 1.50 6.95 -2.39 -0.02 1.48 16 31 H 0.05 2.02 5.86 -2.39 -0.01 2.01 16 32 H 0.04 1.72 6.67 -2.39 -0.02 1.70 16 33 H -0.01 -0.65 8.01 -2.39 -0.02 -0.67 16 34 H -0.01 -0.62 8.00 -2.39 -0.02 -0.64 16 35 H 0.25 16.11 7.22 -92.71 -0.67 15.44 16 36 H 0.11 3.61 4.42 -2.91 -0.01 3.60 16 37 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 38 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.13 2.73 6.14 -2.91 -0.02 2.71 16 Total: -1.00 -65.58 313.50 5.93 -59.64 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.10 Total: 15.00 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 4.21 Total: -49.23 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.43 Total: -78.52 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -65.58 5.93 -59.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602600301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.851 kcal (2) G-P(sol) polarization free energy of solvation -65.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds