Wall clock time and date at job start Thu Apr 9 2020 12:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86809 * 119.99600 * 2 1 4 4 H 1.48496 * 109.46839 * 240.00240 * 3 2 1 5 5 H 1.48499 * 109.47076 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46978 * 119.99894 * 3 2 1 7 7 C 1.39015 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99791 * 180.02562 * 7 2 1 9 9 N 1.36887 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00130 * 180.02562 * 9 7 2 11 11 O 1.21638 * 119.99796 * 359.97438 * 10 9 7 12 12 C 1.47397 * 119.99977 * 180.02562 * 10 9 7 13 13 C 1.40161 * 119.94137 * 0.03315 * 12 10 9 14 14 C 1.36270 * 120.38362 * 180.02562 * 13 12 10 15 15 C 1.39886 * 120.04833 * 359.96425 * 14 13 12 16 16 N 1.35804 * 133.50767 * 180.02562 * 15 14 13 17 17 C 1.30794 * 108.79865 * 179.97438 * 16 15 14 18 18 O 1.35091 * 124.92237 * 179.97438 * 17 16 15 19 19 O 1.34322 * 110.15680 * 0.02562 * 17 16 15 20 20 C 1.35317 * 108.12780 * 359.97438 * 19 17 16 21 21 C 1.38085 * 133.76055 * 180.02562 * 20 19 17 22 22 H 0.97000 * 120.00380 * 0.02562 * 1 2 3 23 23 H 0.97007 * 120.00051 * 0.02562 * 9 7 2 24 24 H 1.08002 * 119.80642 * 359.97438 * 13 12 10 25 25 H 1.07995 * 119.97850 * 179.97438 * 14 13 12 26 26 H 0.96704 * 113.99891 * 0.02562 * 18 17 16 27 27 H 1.08003 * 120.17855 * 359.72224 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6179 0.0000 4 1 3.1014 1.6966 -1.2125 5 1 1.2826 2.7465 -0.0006 6 1 3.1014 1.6966 1.2125 7 6 2.0089 -1.2039 -0.0005 8 1 3.0890 -1.2038 -0.0001 9 7 1.3246 -2.3894 -0.0005 10 6 1.9985 -3.5566 -0.0005 11 8 3.2149 -3.5565 -0.0010 12 6 1.2616 -4.8331 -0.0011 13 6 -0.1400 -4.8318 -0.0024 14 6 -0.8304 -6.0066 -0.0024 15 6 -0.1413 -7.2240 -0.0019 16 7 -0.5379 -8.5228 -0.0022 17 6 0.5232 -9.2875 -0.0020 18 8 0.5030 -10.6383 -0.0017 19 8 1.6360 -8.5351 -0.0010 20 6 1.2644 -7.2340 -0.0011 21 6 1.9611 -6.0418 -0.0008 22 1 -0.4851 0.8400 -0.0004 23 1 0.3545 -2.3895 -0.0005 24 1 -0.6759 -3.8941 -0.0025 25 1 -1.9103 -5.9979 -0.0029 26 1 -0.3862 -11.0184 -0.0021 27 1 3.0412 -6.0441 0.0042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604544995.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:04 Heat of formation + Delta-G solvation = -31.010105 kcal Electronic energy + Delta-G solvation = -16781.006887 eV Core-core repulsion = 13699.171557 eV Total energy + Delta-G solvation = -3081.835330 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.063 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.19289 -39.05372 -38.27208 -36.85914 -34.45715 -34.14565 -31.58691 -30.47661 -29.26654 -25.44997 -23.67634 -23.24061 -21.83918 -20.19281 -18.99716 -18.23424 -17.94115 -17.24840 -17.18666 -15.47301 -15.10015 -14.55957 -14.36756 -13.94992 -13.76257 -13.67985 -13.52216 -12.86566 -12.45095 -12.24233 -11.72776 -11.37679 -11.23395 -10.81724 -10.56889 -10.45710 -10.37819 -9.70044 -8.71491 -8.64380 -8.21949 -8.03937 -6.67537 -3.98034 0.69725 1.39205 1.56810 2.33981 3.11124 3.16173 3.20140 3.51681 3.53183 4.00723 4.32774 4.44398 4.68998 4.94650 5.17891 5.20177 5.34929 5.49687 5.70071 5.83608 6.14298 6.22946 6.50204 6.61443 6.66207 6.89691 7.32459 7.60349 7.84082 8.38085 8.94458 9.28666 9.85125 10.48624 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.064482 B = 0.004579 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.128524 B = 6113.232804 C = 6537.519320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.292 4.292 8 H 0.110 0.890 9 N -0.535 5.535 10 C 0.463 3.537 11 O -0.596 6.596 12 C -0.070 4.070 13 C -0.093 4.093 14 C -0.072 4.072 15 C 0.043 3.957 16 N -0.522 5.522 17 C 0.436 3.564 18 O -0.419 6.419 19 O -0.201 6.201 20 C 0.000 4.000 21 C -0.046 4.046 22 H 0.279 0.721 23 H 0.395 0.605 24 H 0.143 0.857 25 H 0.137 0.863 26 H 0.438 0.562 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 -12.804 0.001 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.422 4.422 8 H 0.128 0.872 9 N -0.168 5.168 10 C 0.251 3.749 11 O -0.483 6.483 12 C -0.075 4.075 13 C -0.114 4.114 14 C -0.091 4.091 15 C -0.070 4.070 16 N -0.273 5.273 17 C 0.187 3.813 18 O -0.220 6.220 19 O -0.095 6.095 20 C -0.048 4.048 21 C -0.066 4.066 22 H 0.089 0.911 23 H 0.230 0.770 24 H 0.161 0.839 25 H 0.155 0.845 26 H 0.298 0.702 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.733 -12.874 0.002 13.405 hybrid contribution -0.119 0.564 0.001 0.576 sum -3.852 -12.310 0.003 12.899 Atomic orbital electron populations 1.69577 1.06188 1.29176 1.47352 1.25432 0.95742 1.00277 0.96515 0.85793 0.78830 0.79570 0.79429 1.19526 1.20685 1.19522 1.19854 0.93887 0.81991 1.46465 0.87204 1.41904 1.09591 1.04684 1.60658 1.17375 0.87425 0.82892 0.87200 1.90632 1.13021 1.86785 1.57849 1.20090 0.93126 0.93851 1.00401 1.21091 0.93351 0.98414 0.98503 1.19839 1.00173 0.88089 1.01047 1.19484 0.90987 0.91365 1.05126 1.71031 1.26308 1.01775 1.28189 1.22207 0.79800 0.85561 0.93769 1.84610 1.38157 1.09167 1.90068 1.84349 1.32537 1.16168 1.76457 1.19864 0.94534 0.81507 1.08928 1.19777 1.00991 0.85711 1.00158 0.91139 0.76984 0.83942 0.84504 0.70244 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.48 13.05 55.50 0.72 -21.76 15 2 C 0.02 0.62 5.50 -17.46 -0.10 0.53 15 3 Si 0.94 19.81 29.55 -169.99 -5.02 14.79 15 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.27 -5.69 7.11 56.52 0.40 -5.28 15 7 C -0.29 -7.77 9.68 -15.01 -0.15 -7.92 15 8 H 0.11 3.04 7.15 -52.48 -0.38 2.67 15 9 N -0.53 -13.13 5.23 -11.97 -0.06 -13.20 15 10 C 0.46 11.06 7.71 -12.53 -0.10 10.96 15 11 O -0.60 -16.20 15.90 5.24 0.08 -16.12 15 12 C -0.07 -1.37 5.88 -104.92 -0.62 -1.99 15 13 C -0.09 -1.54 9.46 -39.57 -0.37 -1.91 15 14 C -0.07 -1.09 10.03 -39.67 -0.40 -1.48 15 15 C 0.04 0.69 7.23 -84.61 -0.61 0.08 15 16 N -0.52 -7.65 11.36 -12.71 -0.14 -7.80 15 17 C 0.44 5.87 9.54 52.32 0.50 6.36 15 18 O -0.42 -3.77 13.62 -40.28 -0.55 -4.32 15 19 O -0.20 -3.22 10.79 -20.53 -0.22 -3.44 15 20 C 0.00 0.00 7.40 -38.76 -0.29 -0.28 15 21 C -0.05 -0.84 9.60 -39.11 -0.38 -1.21 15 22 H 0.28 6.67 8.31 -40.82 -0.34 6.33 15 23 H 0.39 9.03 5.89 -40.82 -0.24 8.79 15 24 H 0.14 2.20 6.36 -52.49 -0.33 1.86 15 25 H 0.14 1.69 8.06 -52.49 -0.42 1.26 15 26 H 0.44 1.44 9.06 45.56 0.41 1.85 15 27 H 0.15 2.69 7.64 -52.48 -0.40 2.29 15 LS Contribution 255.31 15.07 3.85 3.85 Total: -1.00 -31.43 255.31 -4.34 -35.77 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -0.50 Total: 9.09 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.50 Total: 3.13 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.52 Total: -42.75 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.69 Total: -23.88 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.43 -4.34 -35.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544995.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.760 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds