Wall clock time and date at job start Thu Apr 9 2020 12:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86809 * 119.99600 * 2 1 4 4 H 1.48496 * 109.46839 * 240.00240 * 3 2 1 5 5 H 1.48499 * 109.47076 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46978 * 119.99894 * 3 2 1 7 7 C 1.39015 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99791 * 180.02562 * 7 2 1 9 9 N 1.36887 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00130 * 180.02562 * 9 7 2 11 11 O 1.21638 * 119.99796 * 359.97438 * 10 9 7 12 12 C 1.47397 * 119.99977 * 180.02562 * 10 9 7 13 13 C 1.40161 * 119.94137 * 0.03315 * 12 10 9 14 14 C 1.36270 * 120.38362 * 180.02562 * 13 12 10 15 15 C 1.39886 * 120.04833 * 359.96425 * 14 13 12 16 16 N 1.35804 * 133.50767 * 180.02562 * 15 14 13 17 17 C 1.30794 * 108.79865 * 179.97438 * 16 15 14 18 18 O 1.35091 * 124.92237 * 179.97438 * 17 16 15 19 19 O 1.34322 * 110.15680 * 0.02562 * 17 16 15 20 20 C 1.35317 * 108.12780 * 359.97438 * 19 17 16 21 21 C 1.38085 * 133.76055 * 180.02562 * 20 19 17 22 22 H 0.97000 * 120.00380 * 0.02562 * 1 2 3 23 23 H 0.97007 * 120.00051 * 0.02562 * 9 7 2 24 24 H 1.08002 * 119.80642 * 359.97438 * 13 12 10 25 25 H 1.07995 * 119.97850 * 179.97438 * 14 13 12 26 26 H 0.96704 * 113.99891 * 0.02562 * 18 17 16 27 27 H 1.08003 * 120.17855 * 359.72224 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6179 0.0000 4 1 3.1014 1.6966 -1.2125 5 1 1.2826 2.7465 -0.0006 6 1 3.1014 1.6966 1.2125 7 6 2.0089 -1.2039 -0.0005 8 1 3.0890 -1.2038 -0.0001 9 7 1.3246 -2.3894 -0.0005 10 6 1.9985 -3.5566 -0.0005 11 8 3.2149 -3.5565 -0.0010 12 6 1.2616 -4.8331 -0.0011 13 6 -0.1400 -4.8318 -0.0024 14 6 -0.8304 -6.0066 -0.0024 15 6 -0.1413 -7.2240 -0.0019 16 7 -0.5379 -8.5228 -0.0022 17 6 0.5232 -9.2875 -0.0020 18 8 0.5030 -10.6383 -0.0017 19 8 1.6360 -8.5351 -0.0010 20 6 1.2644 -7.2340 -0.0011 21 6 1.9611 -6.0418 -0.0008 22 1 -0.4851 0.8400 -0.0004 23 1 0.3545 -2.3895 -0.0005 24 1 -0.6759 -3.8941 -0.0025 25 1 -1.9103 -5.9979 -0.0029 26 1 -0.3862 -11.0184 -0.0021 27 1 3.0412 -6.0441 0.0042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604544995.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:03 Heat of formation + Delta-G solvation = -58.079631 kcal Electronic energy + Delta-G solvation = -16782.180709 eV Core-core repulsion = 13699.171557 eV Total energy + Delta-G solvation = -3083.009152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.42708 -40.68374 -39.30606 -38.32056 -36.17027 -35.61450 -33.47068 -31.84561 -30.67834 -27.23179 -24.94564 -24.67381 -23.11100 -21.77891 -20.31272 -19.84654 -19.35288 -18.66378 -18.36721 -16.98035 -16.86510 -16.06709 -15.69353 -15.58644 -15.27176 -15.01339 -14.71672 -14.52076 -13.81374 -13.57115 -13.55708 -12.95933 -12.70784 -12.42202 -12.11225 -12.10749 -11.70670 -11.57721 -10.60380 -10.14117 -10.02069 -9.36480 -8.56764 -5.99972 -0.62370 0.07166 0.50020 1.07151 1.44389 1.45657 1.55104 2.00876 2.24866 2.36290 2.67895 3.01999 3.25870 3.27726 3.76204 3.90855 4.00620 4.17985 4.22081 4.60780 4.87495 4.90095 5.12147 5.23070 5.35225 5.36112 5.89566 5.93296 6.47756 6.54338 7.00773 7.39842 7.96807 8.59638 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.064482 B = 0.004579 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.128524 B = 6113.232804 C = 6537.519320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.005 4.005 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.542 5.542 10 C 0.464 3.536 11 O -0.637 6.637 12 C -0.096 4.096 13 C -0.082 4.082 14 C -0.061 4.061 15 C 0.053 3.947 16 N -0.528 5.528 17 C 0.458 3.542 18 O -0.401 6.401 19 O -0.213 6.213 20 C -0.015 4.015 21 C -0.042 4.042 22 H 0.285 0.715 23 H 0.401 0.599 24 H 0.153 0.847 25 H 0.173 0.827 26 H 0.463 0.537 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.185 -14.319 0.000 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.208 4.208 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.176 5.176 10 C 0.254 3.746 11 O -0.527 6.527 12 C -0.099 4.099 13 C -0.103 4.103 14 C -0.080 4.080 15 C -0.060 4.060 16 N -0.279 5.279 17 C 0.209 3.791 18 O -0.207 6.207 19 O -0.108 6.108 20 C -0.064 4.064 21 C -0.063 4.063 22 H 0.094 0.906 23 H 0.238 0.762 24 H 0.170 0.830 25 H 0.191 0.809 26 H 0.328 0.672 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.515 -14.450 0.001 15.467 hybrid contribution 0.374 0.622 0.001 0.726 sum -5.141 -13.828 0.002 14.753 Atomic orbital electron populations 1.69619 1.06917 1.30202 1.47503 1.26163 0.96625 1.02625 0.95354 0.84908 0.77836 0.76011 0.79150 1.19528 1.19098 1.19516 1.19786 0.93242 0.83585 1.49972 0.89599 1.41842 1.09771 1.04466 1.61507 1.18042 0.87176 0.84169 0.85231 1.90582 1.15116 1.87784 1.59184 1.19694 0.94333 0.91882 1.04039 1.21129 0.91833 0.99684 0.97622 1.20122 1.01746 0.86784 0.99363 1.19840 0.90538 0.92534 1.03068 1.71119 1.26219 1.00864 1.29702 1.22518 0.78734 0.86838 0.90983 1.84679 1.40710 1.06448 1.88847 1.84332 1.33774 1.15951 1.76715 1.19689 0.95005 0.81630 1.10059 1.19643 1.00600 0.86322 0.99735 0.90562 0.76243 0.82971 0.80933 0.67163 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.06 13.05 21.67 0.28 -45.77 15 2 C -0.01 -0.27 5.50 84.95 0.47 0.19 15 3 Si 1.00 40.87 29.55 68.60 2.03 42.90 15 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 6 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 7 C -0.34 -18.60 9.68 84.09 0.81 -17.79 15 8 H 0.09 5.04 7.15 -2.91 -0.02 5.02 15 9 N -0.54 -27.55 5.23 -310.01 -1.62 -29.17 15 10 C 0.46 23.10 7.71 86.65 0.67 23.77 15 11 O -0.64 -36.45 15.90 -4.15 -0.07 -36.52 15 12 C -0.10 -3.77 5.88 -20.06 -0.12 -3.89 15 13 C -0.08 -2.62 9.46 22.28 0.21 -2.41 15 14 C -0.06 -1.66 10.03 22.21 0.22 -1.44 15 15 C 0.05 1.56 7.23 39.50 0.29 1.85 15 16 N -0.53 -13.59 11.36 -422.39 -4.80 -18.39 15 17 C 0.46 10.80 9.54 130.40 1.24 12.04 15 18 O -0.40 -5.58 13.62 -61.38 -0.84 -6.41 15 19 O -0.21 -6.39 10.79 9.30 0.10 -6.29 15 20 C -0.02 -0.50 7.40 22.80 0.17 -0.33 15 21 C -0.04 -1.58 9.60 22.57 0.22 -1.36 15 22 H 0.28 13.47 8.31 -92.71 -0.77 12.70 15 23 H 0.40 18.79 5.89 -92.70 -0.55 18.24 15 24 H 0.15 4.52 6.36 -2.91 -0.02 4.50 15 25 H 0.17 3.47 8.06 -2.91 -0.02 3.45 15 26 H 0.46 0.88 9.06 -74.05 -0.67 0.21 15 27 H 0.14 5.20 7.64 -2.91 -0.02 5.18 15 Total: -1.00 -69.05 255.31 -0.68 -69.73 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.05 Total: 19.28 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 4.18 Total: 10.64 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -6.14 Total: -93.34 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.80 Total: -49.22 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -69.05 -0.68 -69.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544995.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.651 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds