Wall clock time and date at job start Thu Apr 9 2020 12:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47244 * 2 1 4 4 C 1.36939 * 120.00226 * 96.17871 * 3 2 1 5 5 H 1.07995 * 120.00612 * 170.95822 * 4 3 2 6 6 C 1.38814 * 119.99525 * 350.95190 * 4 3 2 7 7 N 1.31619 * 120.00319 * 333.41127 * 6 4 3 8 8 Si 1.86796 * 119.99972 * 153.41558 * 6 4 3 9 9 H 1.48501 * 109.47443 * 94.99028 * 8 6 4 10 10 H 1.48496 * 109.47409 * 214.99404 * 8 6 4 11 11 H 1.48497 * 109.47090 * 334.99466 * 8 6 4 12 12 C 1.46498 * 120.00268 * 276.17951 * 3 2 1 13 13 C 1.53000 * 109.47182 * 266.28707 * 12 3 2 14 14 C 1.53006 * 109.47199 * 56.70770 * 13 12 3 15 15 C 1.53002 * 109.47193 * 296.71133 * 13 12 3 16 16 C 1.50699 * 109.47593 * 176.71048 * 13 12 3 17 17 C 1.38228 * 120.00461 * 179.97438 * 16 13 12 18 18 C 1.38230 * 120.00382 * 180.02562 * 17 16 13 19 19 C 1.38235 * 119.99771 * 359.95216 * 18 17 16 20 20 C 1.38233 * 120.00158 * 0.28310 * 19 18 17 21 21 C 1.38234 * 120.00017 * 359.50297 * 20 19 18 22 22 H 1.09007 * 109.47200 * 306.22175 * 1 2 3 23 23 H 1.08996 * 109.47558 * 66.22189 * 1 2 3 24 24 H 1.09004 * 109.47229 * 186.22540 * 1 2 3 25 25 H 1.09000 * 109.47106 * 239.99902 * 2 1 3 26 26 H 1.08999 * 109.47321 * 120.00516 * 2 1 3 27 27 H 0.97003 * 120.00356 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47702 * 146.28540 * 12 3 2 29 29 H 1.09003 * 109.46903 * 26.28117 * 12 3 2 30 30 H 1.09004 * 109.46998 * 180.71553 * 14 13 12 31 31 H 1.08996 * 109.47207 * 300.71547 * 14 13 12 32 32 H 1.08996 * 109.46951 * 60.71452 * 14 13 12 33 33 H 1.09001 * 109.47036 * 300.00225 * 15 13 12 34 34 H 1.09007 * 109.46805 * 59.99773 * 15 13 12 35 35 H 1.08998 * 109.47456 * 180.02562 * 15 13 12 36 36 H 1.08002 * 120.00119 * 359.97438 * 17 16 13 37 37 H 1.08004 * 120.00554 * 179.97438 * 18 17 16 38 38 H 1.08004 * 120.00204 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.00477 * 179.72690 * 20 19 18 40 40 H 1.07996 * 120.00856 * 180.25456 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3669 1.9842 1.1790 5 1 2.8619 2.9440 1.1690 6 6 2.0839 1.3618 2.3871 7 7 1.0769 0.5186 2.4730 8 14 3.1320 1.7211 3.8910 9 1 2.4907 2.7906 4.6973 10 1 3.2580 0.4903 4.7121 11 1 4.4805 2.1683 3.4591 12 6 2.1338 2.1174 -1.2613 13 6 3.5549 1.9712 -1.8089 14 6 3.8873 0.4869 -1.9752 15 6 4.5456 2.6094 -0.8332 16 6 3.6517 2.6604 -3.1456 17 6 4.8484 2.6621 -3.8374 18 6 4.9372 3.2947 -5.0632 19 6 3.8290 3.9249 -5.5977 20 6 2.6336 3.9274 -4.9037 21 6 2.5435 3.2910 -3.6799 22 1 -0.3634 0.6073 0.8291 23 1 -0.3634 0.4143 -0.9404 24 1 -0.3634 -1.0216 0.1114 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 0.8789 0.0839 3.3172 28 1 1.9179 3.1716 -1.0879 29 1 1.4231 1.7149 -1.9832 30 1 4.9043 0.3825 -2.3533 31 1 3.8050 -0.0141 -1.0107 32 1 3.1894 0.0351 -2.6800 33 1 4.3089 3.6668 -0.7147 34 1 4.4757 2.1108 0.1337 35 1 5.5580 2.5057 -1.2235 36 1 5.7142 2.1698 -3.4198 37 1 5.8724 3.2964 -5.6036 38 1 3.8983 4.4189 -6.5556 39 1 1.7689 4.4236 -5.3191 40 1 1.6085 3.2894 -3.1394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611410907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:06 Heat of formation + Delta-G solvation = 44.135883 kcal Electronic energy + Delta-G solvation = -18712.087561 eV Core-core repulsion = 16106.436000 eV Total energy + Delta-G solvation = -2605.651561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.52399 -36.89486 -34.26299 -31.07247 -30.70929 -29.59756 -28.73408 -26.61040 -25.89238 -23.35361 -22.37324 -21.91310 -20.22359 -18.52287 -16.72922 -16.55569 -14.93888 -14.73669 -14.61981 -13.91320 -13.83829 -13.35699 -13.09642 -12.96491 -12.78246 -12.23681 -11.94809 -11.82455 -11.48478 -11.36908 -11.05126 -11.01060 -10.71879 -10.68602 -10.44483 -10.24910 -10.17217 -9.99745 -9.82858 -9.47346 -9.23589 -8.67189 -8.36012 -8.26532 -6.78601 -5.72346 -2.98998 1.64380 1.65596 3.41173 3.50504 3.52586 4.06398 4.55371 5.06543 5.10451 5.18499 5.33754 5.39070 5.62263 5.69812 5.72913 5.82923 5.86389 5.94753 6.25303 6.30070 6.33630 6.42235 6.51560 6.58945 6.67133 6.67616 6.73439 6.75865 6.79086 6.95617 6.99619 7.07472 7.12234 7.18861 7.24209 7.31640 7.72382 7.82424 8.13053 8.41643 9.30466 9.95309 10.41389 11.32612 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030797 B = 0.006507 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.970102 B = 4301.772171 C = 4709.079195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.165 3.835 3 N -0.593 5.593 4 C -0.244 4.244 5 H 0.075 0.925 6 C -0.003 4.003 7 N -0.894 5.894 8 Si 0.885 3.115 9 H -0.292 1.292 10 H -0.291 1.291 11 H -0.281 1.281 12 C 0.162 3.838 13 C -0.050 4.050 14 C -0.126 4.126 15 C -0.130 4.130 16 C -0.051 4.051 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.138 4.138 20 C -0.121 4.121 21 C -0.122 4.122 22 H 0.087 0.913 23 H 0.006 0.994 24 H 0.020 0.980 25 H 0.008 0.992 26 H 0.082 0.918 27 H 0.250 0.750 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 2.926 -12.280 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.040 3.960 3 N -0.313 5.313 4 C -0.373 4.373 5 H 0.093 0.907 6 C -0.200 4.200 7 N -0.540 5.540 8 Si 0.715 3.285 9 H -0.219 1.219 10 H -0.218 1.218 11 H -0.207 1.207 12 C 0.034 3.966 13 C -0.053 4.053 14 C -0.183 4.183 15 C -0.187 4.187 16 C -0.051 4.051 17 C -0.137 4.137 18 C -0.142 4.142 19 C -0.156 4.156 20 C -0.139 4.139 21 C -0.140 4.140 22 H 0.106 0.894 23 H 0.025 0.975 24 H 0.039 0.961 25 H 0.027 0.973 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.052 0.948 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.783 2.824 -12.115 13.327 hybrid contribution 0.471 0.227 0.746 0.911 sum 5.254 3.051 -11.369 12.890 Atomic orbital electron populations 1.22270 0.99596 0.99048 0.99709 1.20808 0.92225 0.84809 0.98138 1.44102 1.75591 1.10360 1.01296 1.19240 1.30869 1.03703 0.83445 0.90728 1.24659 0.97858 1.00436 0.97031 1.70216 1.25731 1.33387 1.24639 0.86529 0.81288 0.77035 0.83659 1.21947 1.21765 1.20686 1.20797 0.91710 0.95720 0.88331 1.20275 1.00361 0.94534 0.90108 1.21805 0.99067 0.95134 1.02273 1.21887 0.95898 1.00052 1.00853 1.20190 0.92895 0.95929 0.96101 1.21018 0.97763 1.00017 0.94934 1.21059 0.98225 0.98768 0.96144 1.21016 0.93538 1.01166 0.99909 1.21118 0.97559 0.99805 0.95447 1.21294 0.99105 0.97927 0.95711 0.89431 0.97469 0.96080 0.97343 0.90011 0.94007 0.93898 0.94298 0.94341 0.90691 0.93872 0.93869 0.89375 0.94809 0.86486 0.86788 0.86870 0.86614 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.62 37.16 0.36 -3.03 16 2 C 0.17 3.87 4.61 -4.04 -0.02 3.85 16 3 N -0.59 -13.88 2.00 -173.24 -0.35 -14.22 16 4 C -0.24 -6.28 7.72 -15.06 -0.12 -6.40 16 5 H 0.07 1.91 7.13 -52.49 -0.37 1.54 16 6 C 0.00 -0.07 4.84 -17.43 -0.08 -0.16 16 7 N -0.89 -24.64 8.76 55.49 0.49 -24.15 16 8 Si 0.88 21.21 29.63 -169.99 -5.04 16.17 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.16 3.24 3.46 -4.04 -0.01 3.23 16 13 C -0.05 -0.88 0.68 -155.66 -0.11 -0.98 16 14 C -0.13 -2.16 7.03 37.16 0.26 -1.90 16 15 C -0.13 -2.35 7.39 37.16 0.27 -2.08 16 16 C -0.05 -0.80 4.76 -104.62 -0.50 -1.30 16 17 C -0.12 -1.71 8.72 -39.59 -0.35 -2.06 16 18 C -0.12 -1.58 10.05 -39.59 -0.40 -1.97 16 19 C -0.14 -1.71 10.05 -39.58 -0.40 -2.10 16 20 C -0.12 -1.60 10.05 -39.58 -0.40 -1.99 16 21 C -0.12 -1.85 8.98 -39.58 -0.36 -2.21 16 22 H 0.09 2.30 6.47 -51.93 -0.34 1.96 16 23 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.18 6.27 -51.93 -0.33 -0.14 16 26 H 0.08 2.14 5.94 -51.93 -0.31 1.83 16 27 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.04 0.88 7.64 -51.93 -0.40 0.49 16 29 H 0.04 0.76 7.20 -51.93 -0.37 0.39 16 30 H 0.04 0.59 7.42 -51.93 -0.39 0.20 16 31 H 0.07 1.45 6.17 -51.93 -0.32 1.13 16 32 H 0.04 0.72 8.04 -51.93 -0.42 0.31 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.83 5.99 -51.93 -0.31 1.52 16 35 H 0.03 0.54 7.39 -51.93 -0.38 0.16 16 36 H 0.12 1.57 7.11 -52.49 -0.37 1.20 16 37 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.11 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.13 1.92 5.89 -52.49 -0.31 1.61 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -26.96 305.22 -8.42 -35.38 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.29 Total: 1.32 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -1.84 Total: -19.10 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.14 Total: -38.37 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.04 Total: 16.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.96 -8.42 -35.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611410907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.519 kcal (2) G-P(sol) polarization free energy of solvation -26.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds