Wall clock time and date at job start Thu Apr 9 2020 12:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47244 * 2 1 4 4 C 1.36939 * 120.00226 * 96.17871 * 3 2 1 5 5 H 1.07995 * 120.00612 * 170.95822 * 4 3 2 6 6 C 1.38814 * 119.99525 * 350.95190 * 4 3 2 7 7 N 1.31619 * 120.00319 * 333.41127 * 6 4 3 8 8 Si 1.86796 * 119.99972 * 153.41558 * 6 4 3 9 9 H 1.48501 * 109.47443 * 94.99028 * 8 6 4 10 10 H 1.48496 * 109.47409 * 214.99404 * 8 6 4 11 11 H 1.48497 * 109.47090 * 334.99466 * 8 6 4 12 12 C 1.46498 * 120.00268 * 276.17951 * 3 2 1 13 13 C 1.53000 * 109.47182 * 266.28707 * 12 3 2 14 14 C 1.53006 * 109.47199 * 56.70770 * 13 12 3 15 15 C 1.53002 * 109.47193 * 296.71133 * 13 12 3 16 16 C 1.50699 * 109.47593 * 176.71048 * 13 12 3 17 17 C 1.38228 * 120.00461 * 179.97438 * 16 13 12 18 18 C 1.38230 * 120.00382 * 180.02562 * 17 16 13 19 19 C 1.38235 * 119.99771 * 359.95216 * 18 17 16 20 20 C 1.38233 * 120.00158 * 0.28310 * 19 18 17 21 21 C 1.38234 * 120.00017 * 359.50297 * 20 19 18 22 22 H 1.09007 * 109.47200 * 306.22175 * 1 2 3 23 23 H 1.08996 * 109.47558 * 66.22189 * 1 2 3 24 24 H 1.09004 * 109.47229 * 186.22540 * 1 2 3 25 25 H 1.09000 * 109.47106 * 239.99902 * 2 1 3 26 26 H 1.08999 * 109.47321 * 120.00516 * 2 1 3 27 27 H 0.97003 * 120.00356 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47702 * 146.28540 * 12 3 2 29 29 H 1.09003 * 109.46903 * 26.28117 * 12 3 2 30 30 H 1.09004 * 109.46998 * 180.71553 * 14 13 12 31 31 H 1.08996 * 109.47207 * 300.71547 * 14 13 12 32 32 H 1.08996 * 109.46951 * 60.71452 * 14 13 12 33 33 H 1.09001 * 109.47036 * 300.00225 * 15 13 12 34 34 H 1.09007 * 109.46805 * 59.99773 * 15 13 12 35 35 H 1.08998 * 109.47456 * 180.02562 * 15 13 12 36 36 H 1.08002 * 120.00119 * 359.97438 * 17 16 13 37 37 H 1.08004 * 120.00554 * 179.97438 * 18 17 16 38 38 H 1.08004 * 120.00204 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.00477 * 179.72690 * 20 19 18 40 40 H 1.07996 * 120.00856 * 180.25456 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3669 1.9842 1.1790 5 1 2.8619 2.9440 1.1690 6 6 2.0839 1.3618 2.3871 7 7 1.0769 0.5186 2.4730 8 14 3.1320 1.7211 3.8910 9 1 2.4907 2.7906 4.6973 10 1 3.2580 0.4903 4.7121 11 1 4.4805 2.1683 3.4591 12 6 2.1338 2.1174 -1.2613 13 6 3.5549 1.9712 -1.8089 14 6 3.8873 0.4869 -1.9752 15 6 4.5456 2.6094 -0.8332 16 6 3.6517 2.6604 -3.1456 17 6 4.8484 2.6621 -3.8374 18 6 4.9372 3.2947 -5.0632 19 6 3.8290 3.9249 -5.5977 20 6 2.6336 3.9274 -4.9037 21 6 2.5435 3.2910 -3.6799 22 1 -0.3634 0.6073 0.8291 23 1 -0.3634 0.4143 -0.9404 24 1 -0.3634 -1.0216 0.1114 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 0.8789 0.0839 3.3172 28 1 1.9179 3.1716 -1.0879 29 1 1.4231 1.7149 -1.9832 30 1 4.9043 0.3825 -2.3533 31 1 3.8050 -0.0141 -1.0107 32 1 3.1894 0.0351 -2.6800 33 1 4.3089 3.6668 -0.7147 34 1 4.4757 2.1108 0.1337 35 1 5.5580 2.5057 -1.2235 36 1 5.7142 2.1698 -3.4198 37 1 5.8724 3.2964 -5.6036 38 1 3.8983 4.4189 -6.5556 39 1 1.7689 4.4236 -5.3191 40 1 1.6085 3.2894 -3.1394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611410907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:06 Heat of formation + Delta-G solvation = 32.699541 kcal Electronic energy + Delta-G solvation = -18712.583478 eV Core-core repulsion = 16106.436000 eV Total energy + Delta-G solvation = -2606.147478 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73286 -38.41662 -35.87065 -32.92946 -31.84485 -31.14892 -30.16836 -28.11787 -27.56759 -25.14565 -23.59965 -23.15300 -21.94474 -19.89925 -18.49046 -17.87396 -16.73909 -15.91358 -15.82225 -15.64936 -15.43643 -14.76043 -14.50339 -14.37020 -14.12919 -13.73673 -13.64378 -13.42503 -13.00171 -12.83721 -12.66870 -12.56693 -12.39072 -12.29028 -12.18099 -11.96222 -11.66798 -11.55253 -11.36221 -11.23796 -11.09059 -10.25837 -9.70573 -9.45415 -8.70904 -7.74910 -5.01037 0.59769 0.61050 1.47370 1.52769 1.59864 2.59237 3.01016 3.32809 3.66124 3.99659 4.09814 4.24013 4.26765 4.34907 4.39815 4.53146 4.72145 4.75462 4.79350 4.87938 4.94399 4.97520 5.06343 5.15543 5.19077 5.23567 5.27317 5.27638 5.31352 5.39203 5.54389 5.62308 5.68887 5.72040 5.80087 5.83833 5.92883 6.16903 6.25059 6.42480 7.29387 8.02567 8.43957 9.28439 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030797 B = 0.006507 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.970102 B = 4301.772171 C = 4709.079195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 N -0.602 5.602 4 C -0.238 4.238 5 H 0.072 0.928 6 C -0.051 4.051 7 N -0.917 5.917 8 Si 0.939 3.061 9 H -0.296 1.296 10 H -0.298 1.298 11 H -0.276 1.276 12 C 0.165 3.835 13 C -0.040 4.040 14 C -0.119 4.119 15 C -0.123 4.123 16 C -0.069 4.069 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.135 4.135 20 C -0.124 4.124 21 C -0.141 4.141 22 H 0.054 0.946 23 H 0.020 0.980 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.243 0.757 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.133 3.664 -14.689 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 N -0.323 5.323 4 C -0.367 4.367 5 H 0.090 0.910 6 C -0.246 4.246 7 N -0.565 5.565 8 Si 0.769 3.231 9 H -0.224 1.224 10 H -0.225 1.225 11 H -0.201 1.201 12 C 0.039 3.961 13 C -0.043 4.043 14 C -0.176 4.176 15 C -0.180 4.180 16 C -0.070 4.070 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.159 4.159 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.080 3.579 -14.548 16.168 hybrid contribution 0.080 0.060 1.365 1.368 sum 6.160 3.639 -13.184 15.000 Atomic orbital electron populations 1.22094 0.99315 0.99157 0.98899 1.20678 0.92347 0.84825 0.97587 1.44222 1.75668 1.10558 1.01843 1.19407 1.29572 1.03409 0.84359 0.91026 1.25204 0.98911 1.01353 0.99121 1.70355 1.26825 1.34704 1.24574 0.85675 0.80158 0.76198 0.81044 1.22373 1.22453 1.20104 1.20872 0.93681 0.94591 0.86970 1.20017 0.97970 0.95104 0.91203 1.21714 1.00412 0.94552 1.00945 1.21773 0.97422 0.99221 0.99592 1.20006 0.94179 0.97343 0.95478 1.21145 0.97238 1.00490 0.95677 1.21411 0.99594 0.97589 0.95465 1.21421 0.92812 1.00211 1.00792 1.21393 0.98946 0.99238 0.94649 1.21333 0.98649 0.99029 0.96879 0.92749 0.96115 0.94938 0.95314 0.92960 0.94771 0.94951 0.93852 0.92330 0.93197 0.93612 0.94471 0.92400 0.92672 0.85780 0.83991 0.83839 0.84540 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.26 9.62 71.98 0.69 -5.56 16 2 C 0.17 8.07 4.61 86.38 0.40 8.47 16 3 N -0.60 -28.54 2.00 -702.02 -1.40 -29.95 16 4 C -0.24 -12.47 7.72 84.03 0.65 -11.82 16 5 H 0.07 3.74 7.13 -2.91 -0.02 3.71 16 6 C -0.05 -2.79 4.84 84.86 0.41 -2.38 16 7 N -0.92 -51.93 8.76 21.65 0.19 -51.74 16 8 Si 0.94 44.61 29.63 68.60 2.03 46.65 16 9 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 C 0.17 6.62 3.46 86.38 0.30 6.92 16 13 C -0.04 -1.39 0.68 -52.93 -0.04 -1.42 16 14 C -0.12 -3.97 7.03 71.98 0.51 -3.46 16 15 C -0.12 -4.38 7.39 71.98 0.53 -3.85 16 16 C -0.07 -2.09 4.76 -19.87 -0.09 -2.18 16 17 C -0.13 -3.30 8.72 22.27 0.19 -3.10 16 18 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 19 C -0.13 -2.78 10.05 22.27 0.22 -2.55 16 20 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 21 C -0.14 -4.05 8.98 22.27 0.20 -3.85 16 22 H 0.05 2.90 6.47 -2.38 -0.02 2.88 16 23 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.03 1.23 6.27 -2.39 -0.01 1.21 16 26 H 0.05 2.80 5.94 -2.39 -0.01 2.78 16 27 H 0.24 13.59 8.31 -92.71 -0.77 12.82 16 28 H 0.03 1.35 7.64 -2.39 -0.02 1.33 16 29 H 0.04 1.68 7.20 -2.39 -0.02 1.66 16 30 H 0.06 1.69 7.42 -2.39 -0.02 1.67 16 31 H 0.05 1.91 6.17 -2.39 -0.01 1.89 16 32 H 0.04 1.47 8.04 -2.39 -0.02 1.45 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 2.41 5.99 -2.38 -0.01 2.40 16 35 H 0.05 1.69 7.39 -2.39 -0.02 1.67 16 36 H 0.12 2.96 7.11 -2.91 -0.02 2.94 16 37 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.12 3.49 5.89 -2.91 -0.02 3.47 16 Total: -1.00 -58.04 305.22 6.24 -51.80 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.00 Total: 13.15 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 4.42 Total: -29.92 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.21 Total: -81.68 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.65 kcal Total: -58.04 6.24 -51.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611410907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.498 kcal (2) G-P(sol) polarization free energy of solvation -58.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds