Wall clock time and date at job start Thu Apr 9 2020 12:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 N 1.46908 * 109.46959 * 182.35401 * 3 2 1 5 5 C 1.46906 * 110.99827 * 298.48736 * 4 3 2 6 6 C 1.50692 * 109.47155 * 288.69423 * 5 4 3 7 7 H 1.07997 * 120.00572 * 0.14735 * 6 5 4 8 8 C 1.37885 * 119.99731 * 180.14559 * 6 5 4 9 9 N 1.31516 * 119.99540 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99987 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47069 * 89.99904 * 10 8 6 12 12 H 1.48501 * 109.46757 * 209.99741 * 10 8 6 13 13 H 1.48498 * 109.46966 * 329.99709 * 10 8 6 14 14 C 1.46892 * 110.99922 * 62.44200 * 4 3 2 15 15 C 1.50702 * 109.47048 * 66.04793 * 14 4 3 16 16 C 1.38241 * 119.99936 * 89.99511 * 15 14 4 17 17 C 1.38236 * 120.00045 * 179.72605 * 16 15 14 18 18 C 1.38239 * 119.99542 * 0.25398 * 17 16 15 19 19 C 1.50706 * 119.99638 * 179.97438 * 18 17 16 20 20 C 1.38236 * 120.00237 * 0.02821 * 18 17 16 21 21 C 1.38233 * 120.00010 * 270.23260 * 15 14 4 22 22 H 1.09000 * 109.46968 * 59.99519 * 1 2 3 23 23 H 1.08994 * 109.47121 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46995 * 300.00193 * 1 2 3 25 25 H 1.09004 * 109.47493 * 240.00347 * 2 1 3 26 26 H 1.09004 * 109.47419 * 120.00321 * 2 1 3 27 27 H 1.08997 * 109.46932 * 62.36019 * 3 2 1 28 28 H 1.08992 * 109.47153 * 302.35360 * 3 2 1 29 29 H 1.09005 * 109.47045 * 48.69817 * 5 4 3 30 30 H 1.09001 * 109.46691 * 168.69008 * 5 4 3 31 31 H 0.97009 * 119.99529 * 180.02562 * 9 8 6 32 32 H 1.08990 * 109.47664 * 306.04749 * 14 4 3 33 33 H 1.09002 * 109.46902 * 186.04443 * 14 4 3 34 34 H 1.07994 * 120.00275 * 0.02562 * 16 15 14 35 35 H 1.07996 * 120.00154 * 180.28168 * 17 16 15 36 36 H 1.09000 * 109.47075 * 90.00692 * 19 18 17 37 37 H 1.09006 * 109.46970 * 210.00407 * 19 18 17 38 38 H 1.08999 * 109.47095 * 330.00186 * 19 18 17 39 39 H 1.08006 * 119.99734 * 179.97438 * 20 18 17 40 40 H 1.08003 * 120.00118 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5080 1.4429 -0.0569 5 6 4.0805 0.7724 1.1182 6 6 3.8822 1.6372 2.3362 7 1 3.3789 2.5886 2.2470 8 6 4.3433 1.2138 3.5648 9 7 4.1706 1.9688 4.6277 10 14 5.2144 -0.4314 3.7191 11 1 6.6729 -0.2403 3.5153 12 1 4.9732 -0.9942 5.0720 13 1 4.6896 -1.3675 2.6927 14 6 3.9867 0.8253 -1.3007 15 6 3.5823 1.6801 -2.4741 16 6 4.4223 2.6830 -2.9207 17 6 4.0539 3.4634 -4.0006 18 6 2.8430 3.2443 -4.6305 19 6 2.4411 4.0955 -5.8074 20 6 2.0004 2.2453 -4.1802 21 6 2.3691 1.4645 -3.1006 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.7116 1.9440 0.9104 28 1 1.6427 1.9684 -0.8681 29 1 3.5831 -0.1859 1.2680 30 1 5.1462 0.6076 0.9591 31 1 4.4954 1.6711 5.4920 32 1 3.5483 -0.1670 -1.4059 33 1 5.0730 0.7411 -1.2698 34 1 5.3686 2.8537 -2.4291 35 1 4.7122 4.2439 -4.3524 36 1 2.7963 3.6332 -6.7283 37 1 1.3549 4.1815 -5.8395 38 1 2.8812 5.0875 -5.7055 39 1 1.0542 2.0744 -4.6721 40 1 1.7109 0.6838 -2.7490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611565515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:10 Heat of formation + Delta-G solvation = 16.007101 kcal Electronic energy + Delta-G solvation = -18017.193895 eV Core-core repulsion = 15410.322579 eV Total energy + Delta-G solvation = -2606.871316 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.46462 -37.34179 -33.24049 -32.79032 -31.70393 -30.70107 -28.70656 -27.04578 -25.35814 -23.21044 -22.44919 -22.00668 -20.63011 -19.14218 -16.74169 -15.83641 -15.48490 -15.22315 -14.89413 -14.48861 -14.06840 -13.87517 -13.62925 -13.23842 -13.17519 -12.60860 -12.45607 -12.34894 -11.82462 -11.73452 -11.45868 -11.35140 -11.16479 -10.94404 -10.85443 -10.69031 -10.52054 -10.29827 -9.85522 -9.84346 -9.27542 -8.68386 -8.54288 -8.30369 -7.24646 -6.02602 -3.98918 1.53847 1.62647 3.28771 3.36427 3.37612 3.92928 4.43343 4.92493 4.93602 5.01051 5.18880 5.23547 5.29340 5.32686 5.44465 5.46808 5.53842 5.69559 5.74844 5.76570 5.79291 5.92569 5.99301 6.06535 6.22566 6.26842 6.31921 6.34674 6.45786 6.54756 6.62176 6.74776 6.82846 6.94313 6.98116 7.06656 7.22983 7.64022 7.93621 8.07713 8.69523 9.07772 9.59393 11.10775 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.005635 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.214553 B = 4967.611837 C = 5446.835075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.165 4.165 3 C 0.062 3.938 4 N -0.518 5.518 5 C 0.157 3.843 6 C -0.503 4.503 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.082 3.918 15 C -0.066 4.066 16 C -0.096 4.096 17 C -0.123 4.123 18 C -0.099 4.099 19 C -0.111 4.111 20 C -0.125 4.125 21 C -0.111 4.111 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.060 0.940 29 H -0.003 1.003 30 H 0.020 0.980 31 H 0.263 0.737 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.115 0.885 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 -1.318 -17.843 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C -0.066 4.066 4 N -0.240 5.240 5 C 0.031 3.969 6 C -0.541 4.541 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.046 4.046 15 C -0.066 4.066 16 C -0.114 4.114 17 C -0.141 4.141 18 C -0.099 4.099 19 C -0.167 4.167 20 C -0.143 4.143 21 C -0.129 4.129 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.015 0.985 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.703 -0.817 -17.618 18.021 hybrid contribution 0.248 -1.725 0.330 1.773 sum -3.455 -2.542 -17.288 17.812 Atomic orbital electron populations 1.21652 0.96185 1.00736 1.01540 1.22208 0.95892 1.00520 1.01818 1.22136 0.87868 0.94319 1.02276 1.62219 1.06935 1.54141 1.00717 1.20273 0.94114 0.93651 0.88849 1.21014 1.37554 1.05803 0.89773 0.90205 1.24886 0.95856 0.96795 0.95785 1.69899 1.47284 1.37473 0.99411 0.86907 0.80560 0.85075 0.77477 1.20206 1.21258 1.19320 1.21137 1.00198 0.94247 0.89014 1.19897 0.94217 0.96642 0.95853 1.21048 0.99983 0.94630 0.95757 1.20978 0.96347 1.00087 0.96711 1.19829 0.94993 0.97273 0.97796 1.20746 1.01502 0.98730 0.95753 1.20916 0.99416 0.96441 0.97508 1.21065 0.96181 0.99856 0.95837 0.93347 0.93573 0.92501 0.92909 0.91060 0.89828 0.92115 0.98525 0.96165 0.92741 0.94513 0.90700 0.85945 0.86506 0.91650 0.91875 0.91797 0.86659 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 37.16 0.37 -1.67 16 2 C -0.17 -2.80 5.13 -26.73 -0.14 -2.94 16 3 C 0.06 1.19 4.82 -3.82 -0.02 1.17 16 4 N -0.52 -10.81 4.65 -237.52 -1.11 -11.91 16 5 C 0.16 3.77 3.65 -4.98 -0.02 3.75 16 6 C -0.50 -14.27 9.12 -34.44 -0.31 -14.59 16 7 H 0.08 2.49 7.71 -52.49 -0.40 2.09 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 10 Si 0.87 21.48 27.46 -169.99 -4.67 16.81 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.35 6.55 56.52 0.37 -5.98 16 14 C 0.08 1.42 4.91 -4.98 -0.02 1.40 16 15 C -0.07 -1.03 4.89 -104.62 -0.51 -1.54 16 16 C -0.10 -1.42 9.70 -39.58 -0.38 -1.81 16 17 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 18 C -0.10 -1.21 5.88 -104.62 -0.62 -1.83 16 19 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 20 C -0.12 -1.58 9.70 -39.58 -0.38 -1.97 16 21 C -0.11 -1.57 7.92 -39.58 -0.31 -1.88 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.83 5.57 -51.93 -0.29 0.54 16 26 H 0.07 1.38 6.33 -51.93 -0.33 1.05 16 27 H 0.08 1.82 7.19 -51.93 -0.37 1.44 16 28 H 0.06 1.08 5.98 -51.93 -0.31 0.77 16 29 H 0.00 -0.07 4.95 -51.93 -0.26 -0.32 16 30 H 0.02 0.49 7.24 -51.93 -0.38 0.11 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.04 0.61 5.98 -51.93 -0.31 0.30 16 33 H 0.07 1.27 7.81 -51.93 -0.41 0.87 16 34 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.12 1.57 7.17 -52.48 -0.38 1.20 16 LS Contribution 314.81 15.07 4.74 4.74 Total: -1.00 -30.38 314.81 -9.13 -39.50 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.40 Total: 0.45 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.47 Total: -22.67 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.33 Total: -38.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.38 -9.13 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611565515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.511 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds