Wall clock time and date at job start Thu Apr 9 2020 12:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 N 1.46908 * 109.46959 * 182.35401 * 3 2 1 5 5 C 1.46906 * 110.99827 * 298.48736 * 4 3 2 6 6 C 1.50692 * 109.47155 * 288.69423 * 5 4 3 7 7 H 1.07997 * 120.00572 * 0.14735 * 6 5 4 8 8 C 1.37885 * 119.99731 * 180.14559 * 6 5 4 9 9 N 1.31516 * 119.99540 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99987 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47069 * 89.99904 * 10 8 6 12 12 H 1.48501 * 109.46757 * 209.99741 * 10 8 6 13 13 H 1.48498 * 109.46966 * 329.99709 * 10 8 6 14 14 C 1.46892 * 110.99922 * 62.44200 * 4 3 2 15 15 C 1.50702 * 109.47048 * 66.04793 * 14 4 3 16 16 C 1.38241 * 119.99936 * 89.99511 * 15 14 4 17 17 C 1.38236 * 120.00045 * 179.72605 * 16 15 14 18 18 C 1.38239 * 119.99542 * 0.25398 * 17 16 15 19 19 C 1.50706 * 119.99638 * 179.97438 * 18 17 16 20 20 C 1.38236 * 120.00237 * 0.02821 * 18 17 16 21 21 C 1.38233 * 120.00010 * 270.23260 * 15 14 4 22 22 H 1.09000 * 109.46968 * 59.99519 * 1 2 3 23 23 H 1.08994 * 109.47121 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46995 * 300.00193 * 1 2 3 25 25 H 1.09004 * 109.47493 * 240.00347 * 2 1 3 26 26 H 1.09004 * 109.47419 * 120.00321 * 2 1 3 27 27 H 1.08997 * 109.46932 * 62.36019 * 3 2 1 28 28 H 1.08992 * 109.47153 * 302.35360 * 3 2 1 29 29 H 1.09005 * 109.47045 * 48.69817 * 5 4 3 30 30 H 1.09001 * 109.46691 * 168.69008 * 5 4 3 31 31 H 0.97009 * 119.99529 * 180.02562 * 9 8 6 32 32 H 1.08990 * 109.47664 * 306.04749 * 14 4 3 33 33 H 1.09002 * 109.46902 * 186.04443 * 14 4 3 34 34 H 1.07994 * 120.00275 * 0.02562 * 16 15 14 35 35 H 1.07996 * 120.00154 * 180.28168 * 17 16 15 36 36 H 1.09000 * 109.47075 * 90.00692 * 19 18 17 37 37 H 1.09006 * 109.46970 * 210.00407 * 19 18 17 38 38 H 1.08999 * 109.47095 * 330.00186 * 19 18 17 39 39 H 1.08006 * 119.99734 * 179.97438 * 20 18 17 40 40 H 1.08003 * 120.00118 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5080 1.4429 -0.0569 5 6 4.0805 0.7724 1.1182 6 6 3.8822 1.6372 2.3362 7 1 3.3789 2.5886 2.2470 8 6 4.3433 1.2138 3.5648 9 7 4.1706 1.9688 4.6277 10 14 5.2144 -0.4314 3.7191 11 1 6.6729 -0.2403 3.5153 12 1 4.9732 -0.9942 5.0720 13 1 4.6896 -1.3675 2.6927 14 6 3.9867 0.8253 -1.3007 15 6 3.5823 1.6801 -2.4741 16 6 4.4223 2.6830 -2.9207 17 6 4.0539 3.4634 -4.0006 18 6 2.8430 3.2443 -4.6305 19 6 2.4411 4.0955 -5.8074 20 6 2.0004 2.2453 -4.1802 21 6 2.3691 1.4645 -3.1006 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.7116 1.9440 0.9104 28 1 1.6427 1.9684 -0.8681 29 1 3.5831 -0.1859 1.2680 30 1 5.1462 0.6076 0.9591 31 1 4.4954 1.6711 5.4920 32 1 3.5483 -0.1670 -1.4059 33 1 5.0730 0.7411 -1.2698 34 1 5.3686 2.8537 -2.4291 35 1 4.7122 4.2439 -4.3524 36 1 2.7963 3.6332 -6.7283 37 1 1.3549 4.1815 -5.8395 38 1 2.8812 5.0875 -5.7055 39 1 1.0542 2.0744 -4.6721 40 1 1.7109 0.6838 -2.7490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611565515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:08 Heat of formation + Delta-G solvation = -1.796503 kcal Electronic energy + Delta-G solvation = -18017.965917 eV Core-core repulsion = 15410.322579 eV Total energy + Delta-G solvation = -2607.643338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.61610 -38.77956 -34.89070 -34.29347 -33.21572 -31.73240 -30.25529 -28.52885 -26.68326 -24.67669 -23.62615 -23.48405 -21.83698 -20.67334 -18.88463 -17.08737 -16.72552 -16.65801 -16.34480 -15.88523 -15.65636 -15.26867 -14.64864 -14.56900 -14.39964 -14.18401 -13.74530 -13.50455 -13.20340 -12.97409 -12.78669 -12.64629 -12.58157 -12.42827 -12.34583 -12.17571 -11.90986 -11.74138 -11.62905 -11.41857 -11.32831 -10.75945 -9.72895 -9.37809 -8.85269 -8.27114 -6.29327 0.48073 0.58529 1.33927 1.35071 1.45637 2.34338 2.83494 3.06341 3.48193 3.89942 3.97575 4.09231 4.12369 4.17321 4.22466 4.35705 4.46471 4.54354 4.64496 4.69310 4.72170 4.78440 4.89756 4.91001 4.96643 5.00516 5.04855 5.08663 5.22815 5.27466 5.34261 5.35385 5.44563 5.56826 5.59415 5.76865 5.83517 6.01228 6.21315 6.41842 6.67891 6.76376 7.33579 8.89990 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.005635 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.214553 B = 4967.611837 C = 5446.835075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.157 4.157 3 C 0.069 3.931 4 N -0.538 5.538 5 C 0.169 3.831 6 C -0.509 4.509 7 H 0.032 0.968 8 C 0.008 3.992 9 N -0.950 5.950 10 Si 0.945 3.055 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.250 1.250 14 C 0.087 3.913 15 C -0.088 4.088 16 C -0.114 4.114 17 C -0.130 4.130 18 C -0.098 4.098 19 C -0.109 4.109 20 C -0.128 4.128 21 C -0.116 4.116 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.001 0.999 30 H 0.023 0.977 31 H 0.266 0.734 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.142 0.858 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.373 -2.641 -20.499 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.196 4.196 3 C -0.059 4.059 4 N -0.261 5.261 5 C 0.042 3.958 6 C -0.548 4.548 7 H 0.050 0.950 8 C -0.189 4.189 9 N -0.591 5.591 10 Si 0.769 3.231 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.174 1.174 14 C -0.040 4.040 15 C -0.089 4.089 16 C -0.132 4.132 17 C -0.148 4.148 18 C -0.098 4.098 19 C -0.166 4.166 20 C -0.145 4.145 21 C -0.135 4.135 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.019 0.981 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.159 0.841 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.162 -2.137 -20.304 20.836 hybrid contribution 0.336 -1.165 1.068 1.616 sum -3.826 -3.302 -19.236 19.889 Atomic orbital electron populations 1.21621 0.93912 1.02149 1.01953 1.22102 0.97891 0.98393 1.01254 1.22018 0.87113 0.95831 1.00936 1.62067 1.07979 1.54827 1.01184 1.20002 0.94395 0.92896 0.88537 1.21224 1.36773 1.04698 0.92075 0.94950 1.25820 0.96722 1.01175 0.95169 1.70061 1.48915 1.39951 1.00181 0.85745 0.79494 0.79915 0.77980 1.19074 1.20767 1.17385 1.21113 1.00063 0.94959 0.87879 1.19803 0.95559 0.97476 0.96020 1.21157 1.00020 0.95250 0.96787 1.21244 0.97212 1.00176 0.96156 1.20265 0.94279 0.97064 0.98195 1.20809 1.02413 0.98565 0.94804 1.21255 1.00448 0.95897 0.96931 1.21195 0.95602 1.00387 0.96303 0.91355 0.91641 0.93716 0.91087 0.93788 0.93770 0.90488 0.98137 0.95914 0.92519 0.93463 0.90933 0.86585 0.84635 0.90153 0.90669 0.91033 0.84061 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.16 -5.19 5.13 30.60 0.16 -5.04 16 3 C 0.07 2.68 4.82 86.30 0.42 3.09 16 4 N -0.54 -22.80 4.65 -905.37 -4.21 -27.01 16 5 C 0.17 8.19 3.65 85.55 0.31 8.51 16 6 C -0.51 -30.11 9.12 25.60 0.23 -29.88 16 7 H 0.03 2.16 7.71 -2.91 -0.02 2.14 16 8 C 0.01 0.47 5.47 84.66 0.46 0.94 16 9 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 10 Si 0.95 44.59 27.46 68.60 1.88 46.47 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 H -0.25 -10.97 6.55 99.48 0.65 -10.32 16 14 C 0.09 2.97 4.91 85.56 0.42 3.39 16 15 C -0.09 -2.68 4.89 -19.86 -0.10 -2.78 16 16 C -0.11 -3.31 9.70 22.27 0.22 -3.10 16 17 C -0.13 -3.17 9.70 22.27 0.22 -2.95 16 18 C -0.10 -2.13 5.88 -19.86 -0.12 -2.25 16 19 C -0.11 -1.61 10.01 71.24 0.71 -0.89 16 20 C -0.13 -2.85 9.70 22.27 0.22 -2.64 16 21 C -0.12 -3.05 7.92 22.27 0.18 -2.87 16 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 2.08 5.57 -2.38 -0.01 2.07 16 26 H 0.04 1.69 6.33 -2.39 -0.02 1.67 16 27 H 0.04 2.03 7.19 -2.39 -0.02 2.01 16 28 H 0.08 2.70 5.98 -2.39 -0.01 2.69 16 29 H 0.00 0.05 4.95 -2.38 -0.01 0.04 16 30 H 0.02 1.09 7.24 -2.39 -0.02 1.08 16 31 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 32 H 0.05 1.50 5.98 -2.39 -0.01 1.48 16 33 H 0.07 2.46 7.81 -2.39 -0.02 2.44 16 34 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 0.95 8.09 -2.38 -0.02 0.93 16 38 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 39 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.13 3.01 7.17 -2.91 -0.02 2.99 16 Total: -1.00 -67.95 314.81 2.95 -65.00 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.94 Total: 15.11 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 4.04 Total: -39.44 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -3.91 Total: -87.14 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -67.95 2.95 -65.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611565515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.199 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds