Wall clock time and date at job start Thu Apr 9 2020 12:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47186 * 2 1 4 4 C 1.38256 * 120.00110 * 265.00095 * 3 2 1 5 5 C 1.38215 * 119.99734 * 180.02562 * 4 3 2 6 6 C 1.38253 * 120.00294 * 359.97438 * 5 4 3 7 7 C 1.38212 * 119.99859 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00209 * 179.97438 * 7 6 5 9 9 C 1.38217 * 119.99801 * 84.97272 * 3 2 1 10 10 C 1.50700 * 119.99988 * 0.04468 * 9 3 2 11 11 N 1.46899 * 109.47407 * 269.97593 * 10 9 3 12 12 C 1.46901 * 111.00020 * 293.95686 * 11 10 9 13 13 C 1.46898 * 111.00197 * 169.99860 * 11 10 9 14 14 C 1.50703 * 109.46972 * 189.99783 * 13 11 10 15 15 H 1.07994 * 120.00008 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99345 * 180.02562 * 14 13 11 17 17 N 1.31507 * 120.00243 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99508 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47222 * 59.99633 * 18 16 14 20 20 H 1.48497 * 109.47231 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47032 * 299.99810 * 18 16 14 22 22 H 1.09002 * 109.46660 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47154 * 300.00087 * 1 2 3 24 24 H 1.09007 * 109.46621 * 60.00179 * 1 2 3 25 25 H 1.08995 * 109.47402 * 240.00371 * 2 1 3 26 26 H 1.08996 * 109.47056 * 119.99667 * 2 1 3 27 27 H 1.07995 * 120.00047 * 0.26995 * 4 3 2 28 28 H 1.08000 * 119.99306 * 179.97438 * 5 4 3 29 29 H 1.08002 * 120.00364 * 180.02562 * 6 5 4 30 30 H 1.08999 * 109.46904 * 89.99973 * 8 7 6 31 31 H 1.09001 * 109.47612 * 210.00253 * 8 7 6 32 32 H 1.09003 * 109.46981 * 330.00930 * 8 7 6 33 33 H 1.09001 * 109.47092 * 29.97816 * 10 9 3 34 34 H 1.09003 * 109.47158 * 149.97551 * 10 9 3 35 35 H 1.09001 * 109.47102 * 59.99940 * 12 11 10 36 36 H 1.08993 * 109.47319 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47007 * 299.99834 * 12 11 10 38 38 H 1.08997 * 109.47260 * 310.00515 * 13 11 10 39 39 H 1.09002 * 109.46727 * 70.00359 * 13 11 10 40 40 H 0.97010 * 119.99990 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3612 2.0379 -1.1928 5 6 2.8224 3.3408 -1.1926 6 6 2.9545 4.0273 0.0001 7 6 2.6247 3.4108 1.1924 8 6 2.7692 4.1589 2.4927 9 6 2.1638 2.1073 1.1924 10 6 1.8058 1.4347 2.4926 11 7 0.3885 1.6756 2.7945 12 6 0.1410 3.0994 3.0579 13 6 -0.0580 0.8463 3.9218 14 6 -1.5574 0.9326 4.0461 15 1 -2.1221 1.5422 3.3563 16 6 -2.2081 0.2333 5.0404 17 7 -1.5203 -0.5094 5.8799 18 14 -4.0667 0.3398 5.1940 19 1 -4.6958 -0.1492 3.9408 20 1 -4.5180 -0.4975 6.3344 21 1 -4.4639 1.7512 5.4293 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2539 1.5031 -2.1249 28 1 3.0796 3.8225 -2.1244 29 1 3.3145 5.0455 0.0002 30 1 1.8393 4.6816 2.7163 31 1 2.9921 3.4546 3.2943 32 1 3.5808 4.8816 2.4078 33 1 1.9820 0.3624 2.4074 34 1 2.4223 1.8417 3.2941 35 1 0.4156 3.6844 2.1802 36 1 -0.9156 3.2497 3.2791 37 1 0.7395 3.4206 3.9105 38 1 0.2333 -0.1897 3.7485 39 1 0.4040 1.2046 4.8418 40 1 -1.9782 -1.0017 6.5793 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237336328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:02 Heat of formation + Delta-G solvation = 18.123806 kcal Electronic energy + Delta-G solvation = -18502.683761 eV Core-core repulsion = 15895.904233 eV Total energy + Delta-G solvation = -2606.779529 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.79139 -36.33133 -34.25575 -32.89357 -31.73001 -29.61402 -27.45626 -27.13485 -25.75021 -23.96383 -23.18507 -21.06220 -20.07642 -19.54262 -16.48902 -15.95532 -15.80942 -15.04492 -14.61032 -14.33769 -13.71332 -13.43815 -13.20737 -13.15453 -12.87061 -12.49725 -12.25143 -12.12061 -11.86885 -11.52429 -11.32813 -11.21704 -11.07462 -10.83207 -10.71563 -10.64304 -10.31230 -10.30232 -10.16099 -9.77787 -9.21502 -8.44042 -8.30044 -8.27210 -7.16395 -6.01763 -4.02856 1.63555 1.66343 3.34011 3.38075 3.41163 3.98100 4.44322 5.01699 5.02810 5.14552 5.17027 5.29940 5.35370 5.45790 5.52260 5.68345 5.79093 5.85626 5.87163 5.92056 6.05060 6.10373 6.15299 6.26055 6.36118 6.39358 6.43133 6.51571 6.56677 6.73178 6.79088 6.84244 7.06330 7.17713 7.30124 7.31641 7.36096 7.80975 8.09698 8.22093 8.55891 9.04721 9.61272 11.08975 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.028529 B = 0.006185 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.223831 B = 4525.832592 C = 4981.566098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 C -0.057 4.057 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.132 4.132 7 C -0.078 4.078 8 C -0.124 4.124 9 C -0.062 4.062 10 C 0.084 3.916 11 N -0.527 5.527 12 C 0.031 3.969 13 C 0.193 3.807 14 C -0.505 4.505 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.278 1.278 22 H 0.048 0.952 23 H 0.099 0.901 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.012 0.988 38 H 0.029 0.971 39 H -0.010 1.010 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 6.079 -10.784 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.117 4.117 3 C -0.057 4.057 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.150 4.150 7 C -0.078 4.078 8 C -0.180 4.180 9 C -0.062 4.062 10 C -0.044 4.044 11 N -0.251 5.251 12 C -0.117 4.117 13 C 0.068 3.932 14 C -0.544 4.544 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.067 0.933 23 H 0.118 0.882 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.031 0.969 38 H 0.047 0.953 39 H 0.007 0.993 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.460 5.806 -11.009 15.049 hybrid contribution -0.512 0.256 0.787 0.974 sum 7.948 6.062 -10.221 14.297 Atomic orbital electron populations 1.21879 0.93637 1.01648 1.04055 1.20521 0.97424 0.92112 1.01673 1.19771 0.97115 0.96568 0.92283 1.20936 1.01229 0.95292 0.97292 1.20966 1.00800 0.94885 0.97526 1.20876 1.02469 0.99480 0.92191 1.19742 0.98882 0.94004 0.95188 1.21147 1.02206 0.99788 0.94871 1.19644 0.97957 0.93428 0.95215 1.21124 0.91212 0.99741 0.92281 1.62130 1.13530 1.06141 1.43268 1.22501 1.01919 0.89599 0.97672 1.19743 0.95796 0.92162 0.85509 1.21107 0.91562 1.28141 1.13564 0.91932 1.24969 0.98412 0.95406 0.95730 1.69947 1.35620 1.30322 1.17985 0.86588 0.85505 0.77943 0.77527 1.20166 1.21406 1.20348 0.93307 0.88220 0.94008 0.92435 0.90928 0.86692 0.86783 0.86773 0.90336 0.91195 0.92381 0.90426 0.94852 0.93006 0.91104 0.96924 0.95251 0.99253 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.89 37.16 0.37 -2.19 16 2 C -0.08 -1.20 5.56 -27.88 -0.16 -1.36 16 3 C -0.06 -0.88 5.13 -104.62 -0.54 -1.42 16 4 C -0.13 -1.78 9.68 -39.58 -0.38 -2.16 16 5 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 6 C -0.13 -1.76 9.70 -39.59 -0.38 -2.14 16 7 C -0.08 -1.15 4.90 -104.62 -0.51 -1.67 16 8 C -0.12 -1.65 8.06 36.01 0.29 -1.36 16 9 C -0.06 -1.02 4.88 -104.62 -0.51 -1.53 16 10 C 0.08 1.53 4.42 -4.98 -0.02 1.51 16 11 N -0.53 -11.09 3.12 -245.82 -0.77 -11.85 16 12 C 0.03 0.61 7.54 60.07 0.45 1.07 16 13 C 0.19 4.92 4.72 -4.98 -0.02 4.89 16 14 C -0.51 -13.95 8.46 -34.44 -0.29 -14.24 16 15 H 0.06 1.72 7.12 -52.49 -0.37 1.34 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 18 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.10 1.97 6.36 -51.93 -0.33 1.64 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 26 H 0.07 1.13 6.16 -51.93 -0.32 0.81 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.08 1.06 5.77 -51.93 -0.30 0.76 16 31 H 0.07 0.99 5.89 -51.93 -0.31 0.68 16 32 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.08 1.42 5.82 -51.93 -0.30 1.12 16 34 H 0.03 0.60 5.93 -51.93 -0.31 0.29 16 35 H 0.05 0.92 5.16 -51.93 -0.27 0.65 16 36 H 0.07 1.49 6.76 -51.93 -0.35 1.14 16 37 H 0.01 0.23 7.21 -51.93 -0.37 -0.14 16 38 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 39 H -0.01 -0.28 8.12 -51.93 -0.42 -0.71 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 308.87 15.07 4.65 4.65 Total: -1.00 -29.02 308.87 -8.76 -37.77 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.15 Total: -0.25 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.20 Total: -21.10 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.03 Total: -37.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.02 -8.76 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237336328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.899 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds