Wall clock time and date at job start Thu Apr 9 2020 12:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86798 * 120.00021 * 2 1 4 4 H 1.48504 * 109.47130 * 275.41532 * 3 2 1 5 5 H 1.48495 * 109.47447 * 35.41923 * 3 2 1 6 6 H 1.48501 * 109.47027 * 155.41747 * 3 2 1 7 7 C 1.39886 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00099 * 341.71836 * 7 2 1 9 9 C 1.41331 * 120.00050 * 161.72362 * 7 2 1 10 10 C 1.40866 * 120.15556 * 330.16147 * 9 7 2 11 11 C 1.37580 * 120.02124 * 180.02562 * 10 9 7 12 12 C 1.38732 * 120.34407 * 359.97438 * 11 10 9 13 13 F 1.35101 * 119.83942 * 179.97438 * 12 11 10 14 14 C 1.40023 * 120.31954 * 359.97438 * 12 11 10 15 15 C 1.48379 * 120.01388 * 180.02562 * 14 12 11 16 16 C 1.39356 * 122.77094 * 310.00186 * 15 14 12 17 17 C 1.33061 * 114.91475 * 179.97438 * 16 15 14 18 18 S 1.75810 * 109.93116 * 359.97438 * 17 16 15 19 19 C 1.34571 * 122.76644 * 129.98218 * 15 14 12 20 20 C 1.38659 * 119.96959 * 0.27906 * 14 12 11 21 21 H 0.97002 * 119.99762 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.98545 * 359.97438 * 10 9 7 23 23 H 1.07995 * 119.82574 * 179.97438 * 11 10 9 24 24 H 1.07996 * 122.54644 * 359.95531 * 16 15 14 25 25 H 1.08007 * 125.03699 * 179.73367 * 17 16 15 26 26 H 1.07999 * 125.22726 * 359.97438 * 19 15 14 27 27 H 1.07996 * 120.16893 * 179.72585 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3758 2.1125 -1.3939 5 1 1.5022 2.6169 0.8114 6 1 3.5928 1.4098 0.5824 7 6 2.0081 -1.2115 -0.0005 8 1 1.5089 -2.1233 0.2924 9 6 3.3679 -1.2423 -0.3844 10 6 3.8612 -0.3092 -1.3173 11 6 5.1853 -0.3420 -1.6894 12 6 6.0416 -1.2909 -1.1499 13 9 7.3399 -1.3142 -1.5229 14 6 5.5668 -2.2245 -0.2207 15 6 6.4887 -3.2360 0.3525 16 6 7.3207 -4.0301 -0.4344 17 6 8.0837 -4.8849 0.2421 18 16 7.7801 -4.7242 1.9663 19 6 6.5906 -3.4621 1.6752 20 6 4.2335 -2.2067 0.1597 21 1 -0.4850 0.8401 0.0004 22 1 3.1995 0.4317 -1.7411 23 1 5.5600 0.3746 -2.4052 24 1 7.3443 -3.9575 -1.5117 25 1 8.7829 -5.5778 -0.2023 26 1 6.0292 -2.9466 2.4403 27 1 3.8629 -2.9281 0.8728 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239513054.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:29 Heat of formation + Delta-G solvation = -14.586724 kcal Electronic energy + Delta-G solvation = -14907.144198 eV Core-core repulsion = 12248.853949 eV Total energy + Delta-G solvation = -2658.290249 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 248.037 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.40229 -39.97717 -38.30000 -35.45461 -32.47323 -32.00616 -29.62874 -26.95664 -25.32650 -22.96435 -22.64525 -20.29408 -19.16790 -18.64422 -18.01614 -17.13754 -16.63306 -16.46448 -16.01121 -15.10558 -14.87952 -14.51273 -14.14109 -14.06493 -13.83885 -13.71991 -13.43726 -13.33252 -12.70532 -12.39747 -12.23434 -11.95334 -11.80644 -11.49596 -11.05289 -10.06576 -9.64997 -9.49791 -8.95302 -8.94487 -6.54302 -0.05948 0.53907 0.59233 0.75103 1.03681 1.26452 1.39165 1.48323 1.80575 2.10042 2.47505 3.33244 3.72292 3.88879 4.10097 4.13235 4.45892 4.55907 4.65335 4.72990 4.82991 4.99251 5.18682 5.30588 5.39470 5.43407 5.60047 5.66833 5.78913 6.11279 6.26956 6.60575 6.72868 8.12514 Molecular weight = 248.04amu Principal moments of inertia in cm(-1) A = 0.033413 B = 0.006612 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.790079 B = 4233.396569 C = 4731.082868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.052 3.948 3 Si 0.958 3.042 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.473 4.473 8 H 0.063 0.937 9 C 0.072 3.928 10 C -0.224 4.224 11 C -0.103 4.103 12 C -0.030 4.030 13 F -0.157 7.157 14 C -0.027 4.027 15 C -0.075 4.075 16 C -0.137 4.137 17 C -0.206 4.206 18 S 0.136 5.864 19 C -0.216 4.216 20 C -0.177 4.177 21 H 0.297 0.703 22 H 0.113 0.887 23 H 0.138 0.862 24 H 0.137 0.863 25 H 0.196 0.804 26 H 0.167 0.833 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.494 -4.179 1.467 13.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.164 4.164 3 Si 0.781 3.219 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.177 1.177 7 C -0.502 4.502 8 H 0.082 0.918 9 C 0.069 3.931 10 C -0.243 4.243 11 C -0.122 4.122 12 C -0.050 4.050 13 F -0.136 7.136 14 C -0.030 4.030 15 C -0.088 4.088 16 C -0.167 4.167 17 C -0.341 4.341 18 S 0.400 5.600 19 C -0.352 4.352 20 C -0.197 4.197 21 H 0.107 0.893 22 H 0.131 0.869 23 H 0.156 0.844 24 H 0.155 0.845 25 H 0.213 0.787 26 H 0.185 0.815 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.841 -4.842 2.784 14.003 hybrid contribution -0.789 1.345 -1.367 2.074 sum 12.052 -3.496 1.417 12.629 Atomic orbital electron populations 1.69726 1.09133 1.31770 1.35812 1.26790 0.95298 1.04080 0.90256 0.85587 0.79707 0.76681 0.79897 1.17773 1.20170 1.17699 1.19437 0.94015 0.95935 1.40820 0.91835 1.17815 0.92869 0.91917 0.90455 1.21039 0.95538 1.04578 1.03189 1.20811 0.93176 0.98009 1.00172 1.17382 0.78766 1.03224 1.05597 1.91324 1.34591 1.96641 1.91035 1.18352 0.93361 0.94666 0.96616 1.17970 0.99102 0.98530 0.93194 1.20199 0.97667 0.97372 1.01452 1.25793 1.06267 1.05620 0.96388 1.83756 1.36244 1.34180 1.05839 1.25947 1.05592 1.04688 0.98953 1.21072 0.91251 1.03440 1.03918 0.89279 0.86911 0.84379 0.84504 0.78682 0.81501 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.09 13.93 21.82 0.30 -43.79 15 2 C 0.05 2.66 5.40 85.23 0.46 3.12 15 3 Si 0.96 40.65 24.51 68.60 1.68 42.33 15 4 H -0.25 -10.01 6.70 99.48 0.67 -9.35 15 5 H -0.28 -10.99 7.11 99.48 0.71 -10.28 15 6 H -0.25 -11.07 6.86 99.48 0.68 -10.38 15 7 C -0.47 -25.42 9.56 23.43 0.22 -25.19 15 8 H 0.06 3.66 8.06 -2.91 -0.02 3.63 15 9 C 0.07 3.56 5.10 -21.31 -0.11 3.46 15 10 C -0.22 -10.26 7.16 22.76 0.16 -10.09 15 11 C -0.10 -4.28 9.99 22.23 0.22 -4.06 15 12 C -0.03 -1.24 7.23 22.82 0.17 -1.08 15 13 F -0.16 -6.24 16.15 44.97 0.73 -5.51 15 14 C -0.03 -1.13 5.59 -20.04 -0.11 -1.24 15 15 C -0.08 -2.70 5.17 -21.15 -0.11 -2.81 15 16 C -0.14 -4.24 9.17 21.38 0.20 -4.05 15 17 C -0.21 -4.95 11.19 66.66 0.75 -4.20 15 18 S 0.14 3.21 23.32 -56.49 -1.32 1.89 15 19 C -0.22 -6.75 10.84 66.98 0.73 -6.03 15 20 C -0.18 -8.07 9.32 22.93 0.21 -7.86 15 21 H 0.30 13.94 8.30 -92.71 -0.77 13.17 15 22 H 0.11 5.03 4.72 -2.91 -0.01 5.02 15 23 H 0.14 4.85 8.06 -2.91 -0.02 4.83 15 24 H 0.14 4.19 8.02 -2.91 -0.02 4.17 15 25 H 0.20 3.24 8.06 -2.91 -0.02 3.22 15 26 H 0.17 5.00 8.06 -2.91 -0.02 4.98 15 27 H 0.11 5.02 8.06 -2.91 -0.02 4.99 15 Total: -1.00 -56.44 255.63 5.31 -51.13 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.13 Total: 13.99 kcal Atomic # 6 Polarization: -62.82 SS G_CDS: 2.79 Total: -60.03 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.30 Total: -43.79 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.73 Total: -5.51 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.68 Total: 42.33 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.32 Total: 1.89 kcal Total: -56.44 5.31 -51.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239513054.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.542 kcal (2) G-P(sol) polarization free energy of solvation -56.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds