Wall clock time and date at job start Thu Apr 9 2020 12:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86795 * 120.00084 * 2 1 4 4 H 1.48499 * 109.47726 * 240.00220 * 3 2 1 5 5 H 1.48502 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46947 * 120.00657 * 3 2 1 7 7 C 1.40150 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.41472 * 120.00069 * 359.97438 * 7 2 1 10 10 O 1.21823 * 120.00274 * 0.02562 * 9 7 2 11 11 N 1.34786 * 119.99759 * 180.27540 * 9 7 2 12 12 C 1.39007 * 120.00082 * 179.72555 * 11 9 7 13 13 N 1.31151 * 126.25859 * 0.02562 * 12 11 9 14 14 N 1.39814 * 109.93174 * 179.97438 * 13 12 11 15 15 H 0.97006 * 125.32067 * 179.97438 * 14 13 12 16 16 C 1.37009 * 109.35737 * 0.02562 * 14 13 12 17 17 N 1.32827 * 133.34215 * 180.02562 * 16 14 13 18 18 C 1.32005 * 121.41887 * 179.97438 * 17 16 14 19 19 O 1.35613 * 119.29076 * 179.97438 * 18 17 16 20 20 C 1.39423 * 121.41221 * 0.02562 * 18 17 16 21 21 C 1.36882 * 119.56848 * 359.97438 * 20 18 17 22 22 C 1.39997 * 118.25746 * 359.72624 * 21 20 18 23 23 H 0.96999 * 119.99887 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99685 * 359.72996 * 11 9 7 25 25 H 0.96698 * 114.00105 * 90.00433 * 19 18 17 26 26 H 1.07998 * 120.21366 * 179.97438 * 20 18 17 27 27 H 1.08001 * 120.86996 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0940 1.6965 -1.2125 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6962 1.2125 7 6 2.0069 -1.2138 -0.0005 8 1 3.0869 -1.2137 -0.0010 9 6 1.2995 -2.4389 -0.0005 10 8 0.0813 -2.4389 -0.0005 11 7 1.9734 -3.6062 0.0045 12 6 1.2784 -4.8100 0.0103 13 7 -0.0253 -4.9530 0.0110 14 7 -0.3558 -6.3115 0.0169 15 1 -1.2574 -6.6694 0.0188 16 6 0.7929 -7.0583 0.0207 17 7 1.0306 -8.3651 0.0262 18 6 2.2621 -8.8405 0.0284 19 8 2.4552 -10.1828 0.0346 20 6 3.3685 -7.9921 0.0256 21 6 3.1801 -6.6363 0.0200 22 6 1.8675 -6.1496 0.0112 23 1 -0.4850 0.8400 0.0004 24 1 2.9434 -3.6062 0.0042 25 1 2.5113 -10.5761 -0.8470 26 1 4.3677 -8.4020 0.0280 27 1 4.0220 -5.9598 0.0181 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641754350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:57 Heat of formation + Delta-G solvation = 31.243478 kcal Electronic energy + Delta-G solvation = -16955.088422 eV Core-core repulsion = 13908.245362 eV Total energy + Delta-G solvation = -3046.843061 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21322 -38.90838 -37.58124 -35.98682 -33.92601 -32.67526 -32.08337 -29.37698 -28.96380 -26.71061 -23.58442 -22.88349 -21.83622 -19.31924 -18.63285 -18.13733 -17.80841 -16.19169 -15.95954 -15.49256 -15.16627 -14.99494 -14.50852 -13.98952 -13.24801 -13.06192 -12.87328 -12.60121 -11.84170 -11.75442 -11.40941 -11.16910 -10.71489 -10.64943 -10.41510 -10.18679 -9.40761 -9.35799 -8.91474 -8.39042 -7.79866 -7.31170 -6.41600 -4.96094 0.92335 1.41742 2.71501 2.99231 3.10332 3.10765 3.12537 3.60905 3.83253 3.98104 4.21683 4.42877 4.60873 4.85577 5.10414 5.24479 5.52825 5.69595 5.69815 6.10430 6.16507 6.55183 7.19180 7.36269 7.40271 7.48342 7.86537 7.89302 8.08146 8.32960 8.74988 9.20260 10.34254 10.53504 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.054621 B = 0.004997 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.495980 B = 5601.728475 C = 6101.833346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.087 3.913 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.533 3.467 10 O -0.533 6.533 11 N -0.651 5.651 12 C 0.356 3.644 13 N -0.235 5.235 14 N -0.497 5.497 15 H 0.439 0.561 16 C 0.347 3.653 17 N -0.534 5.534 18 C 0.371 3.629 19 O -0.483 6.483 20 C -0.241 4.241 21 C 0.025 3.975 22 C -0.242 4.242 23 H 0.275 0.725 24 H 0.401 0.599 25 H 0.401 0.599 26 H 0.142 0.858 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.163 -11.731 -1.664 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.090 0.910 9 C 0.341 3.659 10 O -0.411 6.411 11 N -0.302 5.302 12 C 0.087 3.913 13 N -0.062 5.062 14 N -0.213 5.213 15 H 0.284 0.716 16 C 0.103 3.897 17 N -0.261 5.261 18 C 0.181 3.819 19 O -0.290 6.290 20 C -0.265 4.265 21 C -0.003 4.003 22 C -0.255 4.255 23 H 0.086 0.914 24 H 0.236 0.764 25 H 0.259 0.741 26 H 0.160 0.840 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.243 -11.349 -1.062 12.547 hybrid contribution 1.863 0.449 -0.458 1.971 sum 7.107 -10.900 -1.520 13.100 Atomic orbital electron populations 1.69996 1.07314 1.28183 1.31746 1.25764 0.94684 1.00727 0.92496 0.86288 0.79796 0.80236 0.79692 1.19000 1.20337 1.19000 1.19864 0.94379 0.89576 1.53295 0.90969 1.17227 0.88032 0.81595 0.79014 1.90786 1.13013 1.84558 1.52764 1.44080 1.09273 1.01866 1.75000 1.20543 0.89635 0.85973 0.95173 1.78059 1.11670 0.88916 1.27591 1.46280 1.06039 1.02325 1.66662 0.71584 1.18598 0.88336 0.87331 0.95439 1.65987 1.25055 1.13195 1.21840 1.18819 0.86558 0.84066 0.92438 1.84745 1.93375 1.16869 1.33995 1.21351 0.99645 0.93313 1.12237 1.20594 0.94886 0.94852 0.89959 1.20255 0.94934 0.93069 1.17245 0.91423 0.76407 0.74150 0.83996 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.34 11.72 55.56 0.65 -20.69 15 2 C 0.09 2.28 5.50 -17.35 -0.10 2.19 15 3 Si 0.92 18.87 29.56 -169.99 -5.02 13.84 15 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 6 H -0.27 -5.31 7.11 56.52 0.40 -4.90 15 7 C -0.54 -14.15 9.30 -37.63 -0.35 -14.50 15 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 15 9 C 0.53 14.67 7.52 -15.02 -0.11 14.55 15 10 O -0.53 -16.93 13.59 5.08 0.07 -16.86 15 11 N -0.65 -14.34 5.39 -12.47 -0.07 -14.41 15 12 C 0.36 7.69 8.04 -153.14 -1.23 6.46 15 13 N -0.24 -5.50 10.79 32.50 0.35 -5.15 15 14 N -0.50 -9.34 7.35 31.13 0.23 -9.11 15 15 H 0.44 6.87 8.96 -182.81 -1.64 5.23 15 16 C 0.35 6.23 8.47 -155.95 -1.32 4.91 15 17 N -0.53 -8.74 10.43 -12.40 -0.13 -8.87 15 18 C 0.37 5.04 7.72 -17.04 -0.13 4.91 15 19 O -0.48 -5.23 13.55 -18.54 -0.25 -5.49 15 20 C -0.24 -2.86 9.97 -39.63 -0.39 -3.25 15 21 C 0.02 0.33 10.17 -39.41 -0.40 -0.07 15 22 C -0.24 -4.27 6.38 -105.04 -0.67 -4.94 15 23 H 0.27 7.11 8.29 -40.82 -0.34 6.77 15 24 H 0.40 7.08 8.78 -40.82 -0.36 6.72 15 25 H 0.40 2.17 9.06 45.56 0.41 2.58 15 26 H 0.14 1.22 8.06 -52.49 -0.42 0.80 15 27 H 0.14 1.42 8.06 -52.49 -0.42 1.00 15 LS Contribution 255.82 15.07 3.86 3.86 Total: -1.00 -36.31 255.82 -7.00 -43.31 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -1.98 Total: 9.33 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -4.71 Total: 10.25 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 1.03 Total: -58.24 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.18 Total: -22.34 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -36.31 -7.00 -43.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641754350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.552 kcal (2) G-P(sol) polarization free energy of solvation -36.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds