Wall clock time and date at job start Thu Apr 9 2020 12:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 120.00453 * 2 1 4 4 H 1.07995 * 120.00219 * 152.49633 * 3 2 1 5 5 C 1.38818 * 119.99748 * 332.49794 * 3 2 1 6 6 N 1.31618 * 119.99903 * 348.77094 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 168.76827 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46508 * 119.99577 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.63773 * 179.29857 * 11 2 1 13 13 C 1.55153 * 110.71947 * 56.16052 * 11 2 1 14 14 C 1.55386 * 101.36585 * 277.04260 * 13 11 2 15 15 N 1.47429 * 104.87295 * 323.01728 * 14 13 11 16 16 S 1.65603 * 125.64792 * 204.17245 * 15 14 13 17 17 C 1.81406 * 104.44692 * 269.95722 * 16 15 14 18 18 O 1.42107 * 104.27820 * 26.02483 * 16 15 14 19 19 O 1.42092 * 104.27928 * 153.88474 * 16 15 14 20 20 C 1.47014 * 108.70446 * 24.13251 * 15 14 13 21 21 H 1.09003 * 109.47363 * 95.75694 * 1 2 3 22 22 H 1.09007 * 109.47068 * 335.76043 * 1 2 3 23 23 H 1.09002 * 109.47530 * 215.76052 * 1 2 3 24 24 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 25 25 H 1.09008 * 111.00429 * 35.20755 * 13 11 2 26 26 H 1.09001 * 111.00463 * 159.06184 * 13 11 2 27 27 H 1.08999 * 110.34453 * 204.16740 * 14 13 11 28 28 H 1.08998 * 110.44787 * 81.92095 * 14 13 11 29 29 H 1.09000 * 109.46971 * 60.00070 * 17 16 15 30 30 H 1.08999 * 109.46918 * 179.97438 * 17 16 15 31 31 H 1.09002 * 109.47030 * 300.00119 * 17 16 15 32 32 H 1.09002 * 109.88588 * 239.52821 * 20 15 14 33 33 H 1.08998 * 109.88430 * 118.35540 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1381 1.2386 0.4319 5 6 1.5733 2.3201 -0.5552 6 7 0.4753 2.2160 -1.2733 7 14 2.3562 3.9941 -0.2828 8 1 3.7371 3.9896 -0.8288 9 1 1.5533 5.0344 -0.9745 10 1 2.3999 4.2894 1.1719 11 6 2.1974 -1.2689 0.0006 12 1 3.2729 -1.0917 -0.0120 13 6 1.7720 -2.1488 -1.2044 14 6 0.4812 -2.8170 -0.6550 15 7 0.7625 -3.0685 0.7702 16 16 0.0319 -4.2201 1.7096 17 6 -1.4111 -3.3785 2.4169 18 8 -0.3770 -5.2189 0.7851 19 8 0.9881 -4.5056 2.7212 20 6 1.7997 -2.1283 1.2191 21 1 -0.3634 -0.1031 -1.0225 22 1 -0.3633 0.9371 0.4219 23 1 -0.3634 -0.8339 0.6006 24 1 0.0728 3.0085 -1.6616 25 1 1.5562 -1.5354 -2.0793 26 1 2.5330 -2.8956 -1.4308 27 1 0.2894 -3.7555 -1.1751 28 1 -0.3702 -2.1448 -0.7607 29 1 -2.0624 -3.0362 1.6127 30 1 -1.9579 -4.0709 3.0569 31 1 -1.0802 -2.5229 3.0057 32 1 2.6671 -2.6792 1.5830 33 1 1.4047 -1.4903 2.0096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260556453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:46 Heat of formation + Delta-G solvation = -58.318744 kcal Electronic energy + Delta-G solvation = -17329.699164 eV Core-core repulsion = 14517.956688 eV Total energy + Delta-G solvation = -2811.742475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.098 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.87440 -38.15012 -37.00128 -36.18394 -33.05700 -30.80080 -30.18675 -29.64398 -27.80265 -24.74100 -23.12346 -20.95533 -19.83302 -18.88253 -18.54712 -17.65247 -17.08040 -16.67524 -16.14417 -15.35025 -14.97620 -14.71418 -14.33414 -14.00217 -13.93532 -13.71575 -13.44365 -13.18369 -13.10852 -13.07280 -12.86798 -12.58180 -12.50513 -12.20474 -12.18524 -11.97902 -11.88902 -11.62331 -11.43494 -10.56242 -9.81646 -8.65249 -7.81648 -5.30165 -0.68000 1.50772 1.51740 1.57924 1.69632 2.53702 2.95309 3.12903 3.34682 3.68834 3.73676 4.02181 4.07850 4.25620 4.41119 4.60513 4.69336 4.72753 4.89874 4.95855 5.00127 5.14860 5.25568 5.28814 5.40387 5.46434 5.49266 5.69743 5.76404 6.41472 7.21219 7.92335 8.38026 9.22829 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.044306 B = 0.006289 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.810128 B = 4450.983956 C = 4485.280480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.600 5.600 3 C -0.266 4.266 4 H 0.071 0.929 5 C -0.046 4.046 6 N -0.934 5.934 7 Si 0.965 3.035 8 H -0.277 1.277 9 H -0.298 1.298 10 H -0.280 1.280 11 C 0.160 3.840 12 H 0.081 0.919 13 C -0.140 4.140 14 C 0.118 3.882 15 N -1.012 6.012 16 S 2.637 3.363 17 C -0.655 4.655 18 O -0.989 6.989 19 O -0.991 6.991 20 C 0.113 3.887 21 H -0.002 1.002 22 H 0.019 0.981 23 H 0.036 0.964 24 H 0.248 0.752 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 -9.865 5.286 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.322 5.322 3 C -0.396 4.396 4 H 0.088 0.912 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.793 3.207 8 H -0.203 1.203 9 H -0.224 1.224 10 H -0.206 1.206 11 C 0.050 3.950 12 H 0.099 0.901 13 C -0.181 4.181 14 C -0.007 4.007 15 N -0.850 5.850 16 S 2.735 3.265 17 C -0.809 4.809 18 O -0.980 6.980 19 O -0.982 6.982 20 C -0.014 4.014 21 H 0.016 0.984 22 H 0.038 0.962 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.160 0.840 30 H 0.169 0.831 31 H 0.156 0.844 32 H 0.094 0.906 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.608 -10.689 5.384 12.249 hybrid contribution -0.199 1.753 -0.108 1.767 sum -2.807 -8.936 5.276 10.750 Atomic orbital electron populations 1.20614 0.82967 0.96892 0.96481 1.44056 1.01969 1.00764 1.85415 1.19520 1.01361 0.87535 1.31209 0.91170 1.25785 0.98851 1.01894 0.97629 1.70175 1.22798 1.28461 1.36572 0.85390 0.77789 0.79931 0.77552 1.20279 1.22415 1.20579 1.21555 0.96081 0.85050 0.92277 0.90114 1.23242 0.97336 0.98714 0.98799 1.22206 0.98579 1.00264 0.79654 1.58410 1.52505 1.53006 1.21046 1.03874 0.76356 0.73247 0.73000 1.30399 1.19996 1.15778 1.14698 1.93538 1.84686 1.56838 1.62943 1.93538 1.60032 1.83813 1.60781 1.22292 0.90449 0.90489 0.98203 0.98387 0.96180 0.94581 0.94328 0.91914 0.89738 0.89855 0.91351 0.84016 0.83094 0.84354 0.90636 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 7.84 7.01 127.77 0.90 8.73 16 2 N -0.60 -27.54 2.86 -696.12 -1.99 -29.53 16 3 C -0.27 -13.74 9.55 84.04 0.80 -12.94 16 4 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 5 C -0.05 -2.45 5.05 84.86 0.43 -2.02 16 6 N -0.93 -52.86 10.96 21.65 0.24 -52.63 16 7 Si 0.96 43.41 29.57 68.60 2.03 45.43 16 8 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 9 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 C 0.16 5.89 3.65 46.18 0.17 6.06 16 12 H 0.08 2.96 7.95 -2.39 -0.02 2.94 16 13 C -0.14 -4.61 6.58 32.15 0.21 -4.40 16 14 C 0.12 3.50 6.22 87.02 0.54 4.04 16 15 N -1.01 -28.76 3.20 -505.54 -1.62 -30.38 16 16 S 2.64 66.24 6.29 -56.49 -0.36 65.89 16 17 C -0.66 -10.85 10.99 113.37 1.25 -9.60 16 18 O -0.99 -30.08 17.28 -127.65 -2.21 -32.28 16 19 O -0.99 -30.86 17.60 -127.65 -2.25 -33.11 16 20 C 0.11 3.54 5.83 86.73 0.51 4.04 16 21 H 0.00 -0.10 7.40 -2.39 -0.02 -0.12 16 22 H 0.02 0.99 6.88 -2.38 -0.02 0.98 16 23 H 0.04 1.32 5.66 -2.39 -0.01 1.31 16 24 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 25 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.08 2.27 7.67 -2.39 -0.02 2.25 16 28 H 0.07 2.10 5.52 -2.39 -0.01 2.08 16 29 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 2.05 8.00 -2.39 -0.02 2.03 16 Total: -1.00 -67.48 278.06 -0.26 -67.74 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.09 Total: 4.95 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 4.80 Total: -6.09 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -3.37 Total: -112.53 kcal Atomic # 8 Polarization: -60.94 SS G_CDS: -4.45 Total: -65.39 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 66.24 SS G_CDS: -0.36 Total: 65.89 kcal Total: -67.48 -0.26 -67.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260556453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.417 kcal (2) G-P(sol) polarization free energy of solvation -67.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds