Wall clock time and date at job start Thu Apr 9 2020 12:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86807 * 120.00087 * 2 1 4 4 H 1.48494 * 109.47153 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46853 * 299.99863 * 3 2 1 6 6 H 1.48497 * 109.47004 * 60.00223 * 3 2 1 7 7 C 1.39019 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00230 * 179.97438 * 7 2 1 9 9 N 1.36909 * 119.99574 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99919 * 180.02562 * 9 7 2 11 11 O 1.21636 * 119.99510 * 359.97438 * 10 9 7 12 12 C 1.47336 * 120.00073 * 180.02562 * 10 9 7 13 13 C 1.39821 * 120.99786 * 354.08686 * 12 10 9 14 14 N 1.32206 * 118.98851 * 179.97438 * 13 12 10 15 15 C 1.31968 * 121.19684 * 359.97438 * 14 13 12 16 16 C 1.50701 * 118.87360 * 179.97438 * 15 14 13 17 17 C 1.52996 * 117.50248 * 300.00645 * 16 15 14 18 18 C 1.52997 * 60.03377 * 107.47743 * 17 16 15 19 19 N 1.31684 * 122.24778 * 0.26004 * 15 14 13 20 20 C 1.32968 * 120.84795 * 359.48327 * 19 15 14 21 21 N 1.37883 * 120.64301 * 180.23167 * 20 19 15 22 22 H 0.97002 * 120.00303 * 359.97438 * 1 2 3 23 23 H 0.96992 * 120.00259 * 0.02562 * 9 7 2 24 24 H 1.07992 * 120.50573 * 0.02562 * 13 12 10 25 25 H 1.09007 * 115.54733 * 154.33244 * 16 15 14 26 26 H 1.09001 * 117.49794 * 214.97872 * 17 16 15 27 27 H 1.08997 * 117.50007 * 359.96650 * 17 16 15 28 28 H 1.08999 * 117.49843 * 107.50124 * 18 17 16 29 29 H 1.08997 * 117.49730 * 252.51743 * 18 17 16 30 30 H 0.96999 * 119.99575 * 162.75128 * 21 20 19 31 31 H 0.96997 * 120.00113 * 342.74208 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8890 2.3964 -1.2126 6 1 1.8891 2.3964 1.2125 7 6 2.0089 -1.2039 -0.0005 8 1 3.0889 -1.2039 -0.0010 9 7 1.3243 -2.3896 -0.0005 10 6 1.9982 -3.5568 -0.0005 11 8 3.2146 -3.5567 -0.0010 12 6 1.2615 -4.8328 -0.0011 13 6 -0.1310 -4.8603 0.1218 14 7 -0.7517 -6.0276 0.1160 15 6 -0.0811 -7.1579 -0.0037 16 6 -0.8417 -8.4589 -0.0034 17 6 -1.6757 -8.7894 1.2360 18 6 -2.3694 -8.3844 -0.0662 19 7 1.2304 -7.1880 -0.1178 20 6 1.9400 -6.0635 -0.1272 21 7 3.3127 -6.0998 -0.2517 22 1 -0.4851 0.8400 0.0004 23 1 0.3544 -2.3896 -0.0005 24 1 -0.6910 -3.9421 0.2192 25 1 -0.3560 -9.2875 -0.5189 26 1 -1.7390 -9.8355 1.5357 27 1 -1.6738 -8.0661 2.0514 28 1 -2.8890 -9.1640 -0.6232 29 1 -2.8237 -7.3945 -0.1076 30 1 3.7978 -5.2995 -0.5070 31 1 3.7933 -6.9254 -0.0840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288236034.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:14 Heat of formation + Delta-G solvation = 35.512393 kcal Electronic energy + Delta-G solvation = -17276.517017 eV Core-core repulsion = 14365.692164 eV Total energy + Delta-G solvation = -2910.824852 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.68971 -38.24820 -36.84643 -35.12298 -33.95711 -32.37102 -31.47627 -29.84361 -25.90656 -24.50830 -23.37628 -22.28664 -21.14866 -19.85119 -18.33110 -17.81104 -17.06736 -16.21924 -15.52681 -15.30409 -14.79512 -14.57854 -14.11568 -13.99582 -13.48176 -13.29300 -12.95098 -12.03318 -11.74288 -11.57039 -11.36888 -11.24351 -10.95457 -10.64073 -10.47746 -10.42070 -10.40102 -9.76496 -9.30533 -8.85978 -8.57580 -8.23451 -7.87217 -6.65317 -3.98941 1.09569 1.77684 3.06596 3.16944 3.23492 3.56498 3.67898 4.01329 4.02541 4.28522 4.48193 4.65204 4.81174 4.94599 5.09737 5.14010 5.19061 5.45408 5.64017 5.67263 5.74149 5.95669 6.12968 6.22893 6.29560 6.71843 7.24616 7.34026 7.67413 7.81244 8.14760 8.38994 8.68157 8.95055 9.29046 9.82300 10.51168 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.035126 B = 0.005367 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.947065 B = 5215.357561 C = 5930.739631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.296 4.296 8 H 0.110 0.890 9 N -0.537 5.537 10 C 0.484 3.516 11 O -0.604 6.604 12 C -0.271 4.271 13 C 0.189 3.811 14 N -0.560 5.560 15 C 0.381 3.619 16 C -0.097 4.097 17 C -0.158 4.158 18 C -0.154 4.154 19 N -0.583 5.583 20 C 0.473 3.527 21 N -0.817 5.817 22 H 0.277 0.723 23 H 0.394 0.606 24 H 0.167 0.833 25 H 0.124 0.876 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.428 0.572 31 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 -11.823 0.169 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.426 4.426 8 H 0.128 0.872 9 N -0.169 5.169 10 C 0.272 3.728 11 O -0.493 6.493 12 C -0.285 4.285 13 C 0.025 3.975 14 N -0.279 5.279 15 C 0.112 3.888 16 C -0.117 4.117 17 C -0.196 4.196 18 C -0.192 4.192 19 N -0.308 5.308 20 C 0.224 3.776 21 N -0.368 5.368 22 H 0.087 0.913 23 H 0.229 0.771 24 H 0.184 0.816 25 H 0.142 0.858 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.130 0.870 30 H 0.271 0.729 31 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.770 -12.330 0.151 12.638 hybrid contribution 0.686 1.641 -0.038 1.779 sum -2.084 -10.689 0.113 10.891 Atomic orbital electron populations 1.69593 1.06169 1.28886 1.47837 1.25411 0.95711 1.00208 0.96574 0.85704 0.79744 0.80420 0.77968 1.18961 1.20455 1.20444 1.19897 0.93791 0.81951 1.46941 0.87199 1.41805 1.09434 1.04644 1.61048 1.17128 0.87077 0.82573 0.86033 1.90345 1.13296 1.86179 1.59454 1.21365 0.96091 0.95521 1.15560 1.23179 0.90299 0.96061 0.88004 1.67984 1.40852 0.98056 1.20995 1.21691 0.85566 0.92630 0.88909 1.20568 0.92656 0.93648 1.04806 1.22950 1.02694 1.02137 0.91839 1.23016 0.92386 1.04000 0.99764 1.67652 1.08731 1.29680 1.24729 1.18362 0.86486 0.87555 0.85180 1.42765 1.02612 1.17575 1.73813 0.91292 0.77142 0.81555 0.85810 0.88323 0.88539 0.88549 0.86970 0.72943 0.77630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.90 13.05 55.50 0.72 -22.18 16 2 C 0.03 0.64 5.50 -17.46 -0.10 0.54 16 3 Si 0.94 19.93 29.55 -169.99 -5.02 14.91 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.30 -7.88 9.68 -14.99 -0.15 -8.02 16 8 H 0.11 3.03 7.15 -52.48 -0.38 2.66 16 9 N -0.54 -13.29 5.24 -11.98 -0.06 -13.35 16 10 C 0.48 11.52 7.71 -12.56 -0.10 11.43 16 11 O -0.60 -15.41 13.49 5.25 0.07 -15.34 16 12 C -0.27 -5.61 5.92 -104.52 -0.62 -6.22 16 13 C 0.19 3.54 10.79 -16.80 -0.18 3.36 16 14 N -0.56 -9.94 9.30 -10.43 -0.10 -10.04 16 15 C 0.38 6.50 7.31 -157.14 -1.15 5.35 16 16 C -0.10 -1.26 6.23 -91.73 -0.57 -1.83 16 17 C -0.16 -1.72 10.23 -26.73 -0.27 -2.00 16 18 C -0.15 -1.69 10.01 -26.69 -0.27 -1.96 16 19 N -0.58 -10.55 10.35 -9.73 -0.10 -10.65 16 20 C 0.47 9.13 7.84 -154.86 -1.21 7.92 16 21 N -0.82 -13.94 8.71 31.41 0.27 -13.67 16 22 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 23 H 0.39 9.29 6.06 -40.82 -0.25 9.04 16 24 H 0.17 2.90 6.57 -52.49 -0.34 2.56 16 25 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.11 1.39 7.53 -51.93 -0.39 1.00 16 30 H 0.43 7.94 5.95 -40.82 -0.24 7.69 16 31 H 0.40 5.50 8.95 -40.82 -0.37 5.13 16 LS Contribution 275.31 15.07 4.15 4.15 Total: -1.00 -29.25 275.31 -7.47 -36.72 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -2.79 Total: 20.90 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -4.61 Total: 8.55 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: 0.74 Total: -69.89 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.07 Total: -15.34 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.25 -7.47 -36.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288236034.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.229 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds