Wall clock time and date at job start Thu Apr 9 2020 12:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 119.99917 * 2 1 4 4 S 1.65600 * 120.00180 * 180.02562 * 2 1 3 5 5 O 1.42091 * 106.40261 * 197.07921 * 4 2 1 6 6 O 1.42100 * 106.39805 * 330.00167 * 4 2 1 7 7 N 1.65605 * 107.22001 * 83.53785 * 4 2 1 8 8 C 1.36939 * 119.99713 * 265.05548 * 7 4 2 9 9 H 1.07996 * 120.00437 * 326.38271 * 8 7 4 10 10 C 1.38809 * 119.99463 * 146.39068 * 8 7 4 11 11 N 1.31622 * 120.00686 * 336.33693 * 10 8 7 12 12 Si 1.86801 * 119.99724 * 156.33718 * 10 8 7 13 13 H 1.48507 * 109.47227 * 89.99870 * 12 10 8 14 14 H 1.48507 * 109.47341 * 209.99673 * 12 10 8 15 15 H 1.48503 * 109.47485 * 329.99760 * 12 10 8 16 16 C 1.46491 * 119.99706 * 85.05211 * 7 4 2 17 17 C 1.53010 * 109.47020 * 95.00098 * 16 7 4 18 18 C 1.52991 * 117.49876 * 243.61894 * 17 16 7 19 19 C 1.52995 * 60.00127 * 252.51208 * 18 17 16 20 20 H 1.08990 * 109.47066 * 269.99829 * 1 2 3 21 21 H 1.09009 * 109.47202 * 30.00131 * 1 2 3 22 22 H 1.09004 * 109.46925 * 149.99550 * 1 2 3 23 23 H 1.09004 * 109.47651 * 270.00108 * 3 2 1 24 24 H 1.09005 * 109.47216 * 30.00313 * 3 2 1 25 25 H 1.09001 * 109.46860 * 150.00056 * 3 2 1 26 26 H 0.96993 * 120.00591 * 180.02562 * 11 10 8 27 27 H 1.09004 * 109.47366 * 215.00084 * 16 7 4 28 28 H 1.08995 * 109.47555 * 335.00103 * 16 7 4 29 29 H 1.08994 * 115.54873 * 29.33294 * 17 16 7 30 30 H 1.09000 * 117.50100 * 359.97438 * 18 17 16 31 31 H 1.08999 * 117.49775 * 145.02177 * 18 17 16 32 32 H 1.08998 * 117.50051 * 252.50988 * 19 18 17 33 33 H 1.08997 * 117.49934 * 107.49277 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 -0.0006 5 8 3.6221 -1.1302 0.3998 6 8 1.4713 -2.3721 0.6805 7 7 2.3840 -1.9470 -1.5726 8 6 1.4567 -2.8290 -2.0598 9 1 1.0368 -3.5839 -1.4117 10 6 1.0565 -2.7528 -3.3868 11 7 1.1738 -1.6194 -4.0456 12 14 0.3515 -4.2589 -4.2376 13 1 -1.1219 -4.2871 -4.0538 14 1 0.6685 -4.2023 -5.6874 15 1 0.9474 -5.4848 -3.6482 16 6 3.4565 -1.4571 -2.4420 17 6 4.6165 -2.4548 -2.4327 18 6 5.9550 -1.9766 -1.8667 19 6 5.7911 -2.1812 -3.3740 20 1 -0.3633 0.0000 1.0276 21 1 -0.3634 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 2.3792 1.5835 -1.0277 24 1 1.6084 2.0284 0.5139 25 1 3.1499 1.1383 0.5138 26 1 0.8939 -1.5660 -4.9727 27 1 3.0790 -1.3483 -3.4588 28 1 3.8057 -0.4905 -2.0788 29 1 4.3403 -3.4952 -2.2618 30 1 6.0095 -0.9512 -1.5013 31 1 6.5597 -2.7025 -1.3231 32 1 6.2880 -3.0417 -3.8221 33 1 5.7377 -1.2905 -3.9999 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408006607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:56 Heat of formation + Delta-G solvation = -40.980478 kcal Electronic energy + Delta-G solvation = -17652.168122 eV Core-core repulsion = 14841.177490 eV Total energy + Delta-G solvation = -2810.990632 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.098 amu Computer time = 0.02 seconds Orbital eigenvalues (eV) -37.19173 -35.92475 -35.09324 -34.72299 -34.47161 -31.37231 -27.37992 -26.49166 -23.94964 -23.51458 -21.71309 -19.88675 -18.39391 -17.28376 -16.70693 -16.20786 -15.12459 -14.78559 -14.54724 -13.81603 -13.65882 -13.59007 -13.01162 -12.29736 -11.98745 -11.96006 -11.74867 -11.49663 -11.25166 -11.14485 -10.90078 -10.85431 -10.67810 -10.62595 -10.49598 -10.44757 -10.24856 -9.60721 -9.25383 -9.02725 -8.16667 -7.78837 -6.44104 -4.04732 1.93307 3.14065 3.21751 3.29703 3.99332 4.26381 4.52875 4.81745 4.84484 5.49285 5.58199 5.63590 5.66450 5.74288 5.96535 6.05383 6.17441 6.20247 6.23578 6.28865 6.43437 6.46684 6.57999 6.71370 6.80841 6.85264 7.27802 7.31119 7.43836 7.68667 8.39592 8.84976 9.28913 10.53011 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.013141 C = 0.009184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.428102 B = 2130.275268 C = 3047.903787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -1.022 6.022 3 C 0.094 3.906 4 S 2.680 3.320 5 O -1.012 7.012 6 O -1.003 7.003 7 N -0.822 5.822 8 C -0.271 4.271 9 H 0.103 0.897 10 C 0.041 3.959 11 N -0.840 5.840 12 Si 0.916 3.084 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.156 3.844 17 C -0.146 4.146 18 C -0.179 4.179 19 C -0.188 4.188 20 H 0.035 0.965 21 H 0.054 0.946 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.270 0.730 27 H 0.114 0.886 28 H 0.047 0.953 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 3.153 -0.038 3.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.857 5.857 3 C -0.053 4.053 4 S 2.703 3.297 5 O -0.997 6.997 6 O -0.987 6.987 7 N -0.651 5.651 8 C -0.414 4.414 9 H 0.120 0.880 10 C -0.169 4.169 11 N -0.479 5.479 12 Si 0.741 3.259 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.191 1.191 16 C 0.029 3.971 17 C -0.166 4.166 18 C -0.216 4.216 19 C -0.226 4.226 20 H 0.053 0.947 21 H 0.072 0.928 22 H 0.092 0.908 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.426 2.951 0.787 3.901 hybrid contribution -0.565 -0.270 -0.777 0.997 sum 1.862 2.681 0.010 3.264 Atomic orbital electron populations 1.21194 0.80323 1.02559 0.99705 1.58740 1.14323 1.22320 1.90359 1.21312 0.96642 0.86594 1.00770 1.07576 0.72673 0.72607 0.76892 1.93401 1.37913 1.84902 1.83471 1.93400 1.69572 1.61431 1.74287 1.53540 1.31710 1.50077 1.29740 1.19507 1.19490 1.06650 0.95706 0.87994 1.25541 0.95890 0.97127 0.98386 1.69955 1.42661 1.23845 1.11459 0.86112 0.79241 0.82137 0.78366 1.20122 1.20674 1.19096 1.20847 0.84350 0.92200 0.99689 1.22862 0.89673 1.01745 1.02336 1.22932 1.01455 1.02239 0.95014 1.22874 1.04047 1.02662 0.92999 0.94656 0.92764 0.90842 0.93820 0.92789 0.91146 0.91937 0.86869 0.93493 0.87738 0.89010 0.89918 0.89750 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.04 10.30 59.85 0.62 2.66 16 2 N -1.02 -21.18 3.64 -129.20 -0.47 -21.65 16 3 C 0.09 1.63 10.62 59.84 0.64 2.26 16 4 S 2.68 64.16 5.93 -107.50 -0.64 63.52 16 5 O -1.01 -24.89 15.80 -57.17 -0.90 -25.80 16 6 O -1.00 -26.60 16.25 -57.17 -0.93 -27.53 16 7 N -0.82 -19.87 2.90 -59.91 -0.17 -20.04 16 8 C -0.27 -6.84 9.10 -15.06 -0.14 -6.98 16 9 H 0.10 2.64 7.40 -52.49 -0.39 2.25 16 10 C 0.04 1.00 4.98 -17.43 -0.09 0.91 16 11 N -0.84 -20.57 11.28 55.49 0.63 -19.94 16 12 Si 0.92 19.06 29.61 -169.99 -5.03 14.02 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 16 C 0.16 3.49 5.23 -4.04 -0.02 3.47 16 17 C -0.15 -2.96 5.99 -90.62 -0.54 -3.50 16 18 C -0.18 -3.23 10.18 -26.74 -0.27 -3.50 16 19 C -0.19 -3.15 10.25 -26.74 -0.27 -3.43 16 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.88 8.07 -51.92 -0.42 0.47 16 22 H 0.07 1.50 7.95 -51.93 -0.41 1.09 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 25 H 0.07 1.23 7.00 -51.93 -0.36 0.87 16 26 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 27 H 0.11 2.68 5.31 -51.93 -0.28 2.40 16 28 H 0.05 1.00 7.48 -51.93 -0.39 0.62 16 29 H 0.10 2.22 8.14 -51.93 -0.42 1.80 16 30 H 0.09 1.66 8.03 -51.93 -0.42 1.25 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 289.86 15.07 4.37 4.37 Total: -1.00 -28.74 289.86 -7.99 -36.73 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.76 Total: 4.43 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.08 Total: -8.11 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.02 Total: -61.63 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -1.83 Total: -53.33 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.02 kcal Atomic # 16 Polarization: 64.16 SS G_CDS: -0.64 Total: 63.52 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.74 -7.99 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408006607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.251 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.02 seconds