Wall clock time and date at job start Thu Apr 9 2020 12:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47121 * 239.99720 * 2 1 3 5 5 H 1.07996 * 120.00373 * 240.00281 * 4 2 1 6 6 C 1.37877 * 119.99682 * 60.00337 * 4 2 1 7 7 N 1.31519 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00107 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47273 * 90.00129 * 8 6 4 10 10 H 1.48504 * 109.47303 * 210.00029 * 8 6 4 11 11 H 1.48498 * 109.47110 * 330.00008 * 8 6 4 12 12 C 1.50706 * 109.46859 * 120.00432 * 2 1 3 13 13 N 1.30947 * 126.41241 * 239.99701 * 12 2 1 14 14 C 1.35335 * 105.57262 * 179.97438 * 13 12 2 15 15 C 1.47982 * 126.43330 * 179.97438 * 14 13 12 16 16 C 1.36628 * 126.33947 * 0.02649 * 15 14 13 17 17 C 1.39456 * 107.86071 * 179.97438 * 16 15 14 18 18 N 1.30914 * 108.61034 * 0.02562 * 17 16 15 19 19 N 1.36332 * 126.34343 * 179.71827 * 15 14 13 20 20 C 1.46505 * 126.14167 * 359.97438 * 19 15 14 21 21 N 1.30917 * 107.13160 * 0.02562 * 14 13 12 22 22 O 1.21291 * 110.06714 * 359.70604 * 21 14 13 23 23 H 1.09001 * 109.47000 * 300.00487 * 1 2 3 24 24 H 1.09002 * 109.46917 * 59.99707 * 1 2 3 25 25 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99941 * 179.97438 * 7 6 4 27 27 H 1.08002 * 126.06749 * 0.02562 * 16 15 14 28 28 H 1.08001 * 125.69635 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.46492 * 90.00897 * 20 19 15 30 30 H 1.09003 * 109.47235 * 210.00099 * 20 19 15 31 31 H 1.08993 * 109.47430 * 330.00718 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 6 2.0323 -0.7105 1.2305 13 7 2.7882 -0.1989 2.1694 14 6 2.9822 -1.1962 3.0634 15 6 3.7746 -1.1166 4.3106 16 6 4.4465 -0.0211 4.7744 17 6 5.0584 -0.3722 5.9773 18 7 4.7766 -1.6234 6.2398 19 7 3.9645 -2.1210 5.2127 20 6 3.4192 -3.4778 5.1226 21 7 2.3383 -2.2450 2.6169 22 8 1.7851 -1.9795 1.5706 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7096 1.1619 -3.4844 27 1 4.4944 0.9455 4.2950 28 1 5.6638 0.2793 6.5901 29 1 4.1216 -4.1167 4.5872 30 1 3.2607 -3.8731 6.1260 31 1 2.4700 -3.4532 4.5876 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896853607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:18 Heat of formation + Delta-G solvation = 141.969718 kcal Electronic energy + Delta-G solvation = -17404.159920 eV Core-core repulsion = 14497.951404 eV Total energy + Delta-G solvation = -2906.208516 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.93485 -41.05521 -35.49360 -34.86653 -33.35570 -32.10784 -30.32967 -29.53104 -26.80571 -25.45881 -24.18826 -23.58785 -21.44839 -20.92296 -19.55575 -17.63820 -17.22786 -16.36023 -16.14939 -15.44411 -15.06550 -14.67318 -13.88710 -13.65351 -13.26614 -12.97496 -12.82315 -12.51609 -11.98674 -11.81750 -11.53563 -11.20204 -11.08153 -10.88031 -10.72289 -10.58153 -10.41952 -10.20489 -9.88024 -9.28951 -9.03196 -8.63757 -8.45316 -6.28428 -4.38449 1.10581 2.03984 2.30941 2.62343 3.20077 3.22546 3.27389 3.31518 3.55972 3.79989 4.23300 4.40397 4.62153 5.05135 5.14078 5.17652 5.31743 5.49171 5.60209 5.76200 6.06061 6.29953 6.37887 6.53400 6.58888 6.71689 6.76336 6.82621 7.29323 7.54689 7.57963 7.72196 7.91917 8.59921 8.68243 9.28434 10.77709 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.039577 B = 0.005079 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.305162 B = 5511.953866 C = 5593.717160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.124 3.876 3 H 0.079 0.921 4 C -0.526 4.526 5 H 0.063 0.937 6 C 0.072 3.928 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.256 3.744 13 N -0.492 5.492 14 C 0.214 3.786 15 C 0.161 3.839 16 C -0.218 4.218 17 C 0.042 3.958 18 N -0.283 5.283 19 N -0.360 5.360 20 C 0.099 3.901 21 N -0.400 5.400 22 O 0.080 5.920 23 H 0.018 0.982 24 H 0.102 0.898 25 H 0.040 0.960 26 H 0.268 0.732 27 H 0.160 0.840 28 H 0.190 0.810 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 -3.112 10.678 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.104 3.896 3 H 0.097 0.903 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.132 4.132 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.038 3.962 13 N -0.226 5.226 14 C -0.057 4.057 15 C 0.033 3.967 16 C -0.249 4.249 17 C -0.142 4.142 18 N -0.107 5.107 19 N -0.145 5.145 20 C -0.042 4.042 21 N -0.112 5.112 22 O 0.022 5.978 23 H 0.037 0.963 24 H 0.121 0.879 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.178 0.822 28 H 0.207 0.793 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.011 -4.554 11.955 13.143 hybrid contribution 0.182 0.201 -1.540 1.563 sum 3.194 -4.353 10.415 11.732 Atomic orbital electron populations 1.21873 0.95337 1.00770 1.01824 1.17931 0.93982 0.95404 0.82301 0.90334 1.20848 1.33203 1.13332 0.89100 0.91900 1.24867 0.94453 0.94791 0.99073 1.69846 1.35534 1.22204 1.24389 0.86370 0.79415 0.79333 0.81689 1.20237 1.20861 1.19727 1.30265 0.88947 0.80433 0.96558 1.72114 1.19151 1.28214 1.03109 1.22678 0.99837 0.87201 0.95976 1.17709 0.99880 0.90324 0.88780 1.21477 1.05064 0.99824 0.98560 1.23758 1.00473 0.93122 0.96839 1.77348 1.11447 1.12337 1.09545 1.48807 1.39136 1.10547 1.16045 1.22020 1.00002 0.78195 1.04001 1.74821 1.13626 1.23168 0.99581 1.85239 1.53629 1.30967 1.27975 0.96284 0.87908 0.94094 0.92229 0.82232 0.79307 0.90593 0.89222 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.95 37.16 0.33 -2.69 16 2 C 0.12 2.90 2.77 -92.92 -0.26 2.64 16 3 H 0.08 1.94 8.14 -51.93 -0.42 1.51 16 4 C -0.53 -13.34 8.55 -34.44 -0.29 -13.63 16 5 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -22.78 11.32 55.43 0.63 -22.16 16 8 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 12 C 0.26 5.61 6.94 -12.98 -0.09 5.52 16 13 N -0.49 -10.52 11.57 -9.89 -0.11 -10.63 16 14 C 0.21 4.23 7.93 -156.08 -1.24 2.99 16 15 C 0.16 2.80 6.92 -82.46 -0.57 2.23 16 16 C -0.22 -3.30 10.75 -39.71 -0.43 -3.73 16 17 C 0.04 0.55 11.98 -17.49 -0.21 0.34 16 18 N -0.28 -4.25 12.56 30.55 0.38 -3.87 16 19 N -0.36 -5.65 4.06 -64.14 -0.26 -5.91 16 20 C 0.10 1.23 11.08 59.85 0.66 1.90 16 21 N -0.40 -7.88 10.29 30.97 0.32 -7.56 16 22 O 0.08 1.68 11.29 18.01 0.20 1.88 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 27 H 0.16 2.25 8.06 -52.49 -0.42 1.82 16 28 H 0.19 1.64 8.06 -52.49 -0.42 1.21 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.28 6.52 -51.93 -0.34 0.94 16 LS Contribution 278.58 15.07 4.20 4.20 Total: -1.00 -27.61 278.58 -5.00 -32.61 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -3.15 Total: -0.66 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.19 Total: -2.73 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.96 Total: -50.13 kcal Atomic # 8 Polarization: 1.68 SS G_CDS: 0.20 Total: 1.88 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.61 -5.00 -32.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896853607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.579 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds