Wall clock time and date at job start Thu Apr 9 2020 12:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47341 * 2 1 4 4 C 1.50696 * 109.47206 * 120.00894 * 2 1 3 5 5 O 1.20820 * 120.00390 * 119.99894 * 4 2 1 6 6 O 1.34229 * 119.99923 * 299.99398 * 4 2 1 7 7 C 1.45194 * 117.00397 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47711 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.47671 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99803 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00172 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00374 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99816 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47102 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.46991 * 120.00252 * 13 11 9 16 16 H 1.48504 * 109.46642 * 239.99825 * 13 11 9 17 17 C 1.50706 * 109.46560 * 240.00517 * 2 1 3 18 18 C 1.38237 * 119.99744 * 120.00468 * 17 2 1 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 2 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00223 * 300.01679 * 17 2 1 23 23 H 1.08997 * 109.47341 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46743 * 299.99305 * 1 2 3 25 25 H 1.08997 * 109.47427 * 59.98988 * 1 2 3 26 26 H 1.09008 * 109.46966 * 300.00327 * 7 6 4 27 27 H 1.09001 * 109.47379 * 59.99795 * 7 6 4 28 28 H 1.09008 * 109.46964 * 300.00073 * 8 7 6 29 29 H 1.09001 * 109.47075 * 59.99353 * 8 7 6 30 30 H 0.96996 * 120.00262 * 179.97438 * 12 11 9 31 31 H 1.08005 * 120.00088 * 359.97438 * 18 17 2 32 32 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 33 33 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 35 35 H 1.07998 * 119.99975 * 0.02562 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 8 2.7269 -1.6929 1.1194 6 8 1.7082 -0.2521 2.4495 7 6 2.2277 -0.9860 3.5895 8 6 1.7557 -0.3197 4.8833 9 6 2.2945 -1.0819 6.0665 10 1 2.9115 -1.9545 5.9111 11 6 1.9997 -0.6651 7.3472 12 7 1.2488 0.3978 7.5365 13 14 2.6682 -1.6095 8.8138 14 1 3.4797 -2.7574 8.3353 15 1 3.5176 -0.7107 9.6359 16 1 1.5381 -2.1115 9.6361 17 6 2.0322 -0.7103 -1.2306 18 6 2.8270 -0.0385 -2.1405 19 6 3.2872 -0.6899 -3.2695 20 6 2.9536 -2.0134 -3.4882 21 6 2.1548 -2.6839 -2.5808 22 6 1.6979 -2.0336 -1.4497 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 1.8642 -2.0132 3.5566 27 1 3.3172 -0.9850 3.5564 28 1 2.1189 0.7075 4.9164 29 1 0.6662 -0.3211 4.9162 30 1 1.0411 0.6908 8.4375 31 1 3.0877 0.9956 -1.9696 32 1 3.9078 -0.1649 -3.9806 33 1 3.3135 -2.5224 -4.3701 34 1 1.8905 -3.7166 -2.7538 35 1 1.0765 -2.5584 -0.7391 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181662145.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:27 Heat of formation + Delta-G solvation = -98.161690 kcal Electronic energy + Delta-G solvation = -17181.812488 eV Core-core repulsion = 14336.438685 eV Total energy + Delta-G solvation = -2845.373803 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76214 -40.00568 -37.69704 -35.53462 -35.25561 -32.33296 -31.80093 -30.36263 -27.30458 -25.81972 -23.74242 -23.41393 -22.68288 -21.12678 -18.92927 -18.15398 -17.91065 -17.63520 -17.11590 -16.50333 -16.19532 -15.66472 -15.10730 -14.65626 -14.50742 -14.39227 -14.17059 -13.85771 -13.34687 -13.18856 -13.04826 -12.94260 -12.66428 -12.59650 -12.52417 -11.93203 -11.89300 -11.76512 -11.49876 -11.48442 -11.21212 -10.63174 -9.79158 -9.68130 -8.28534 -6.41868 0.36481 0.52606 1.16545 1.40213 1.40755 1.54293 1.78960 2.39151 2.91627 3.05781 3.45304 3.72836 3.97303 4.08220 4.17929 4.20409 4.23159 4.26657 4.31580 4.61836 4.65553 4.67350 4.82554 4.87162 5.06317 5.16003 5.18628 5.27946 5.44813 5.54171 5.56192 5.62564 5.66253 5.73207 6.05094 6.11688 6.69921 6.74758 7.28058 8.84248 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.048477 B = 0.003831 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.458190 B = 7306.971075 C = 7562.306565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.037 4.037 3 H 0.137 0.863 4 C 0.455 3.545 5 O -0.536 6.536 6 O -0.362 6.362 7 C 0.090 3.910 8 C 0.032 3.968 9 C -0.551 4.551 10 H 0.063 0.937 11 C 0.007 3.993 12 N -0.926 5.926 13 Si 0.974 3.026 14 H -0.264 1.264 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.091 4.091 18 C -0.117 4.117 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.134 4.134 22 C -0.107 4.107 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.007 0.993 29 H 0.008 0.992 30 H 0.268 0.732 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.481 -0.844 -21.763 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.056 4.056 3 H 0.155 0.845 4 C 0.299 3.701 5 O -0.426 6.426 6 O -0.278 6.278 7 C 0.017 3.983 8 C -0.006 4.006 9 C -0.589 4.589 10 H 0.081 0.919 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.797 3.203 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.091 4.091 18 C -0.134 4.134 19 C -0.144 4.144 20 C -0.139 4.139 21 C -0.151 4.151 22 C -0.126 4.126 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.607 -1.033 -21.619 21.652 hybrid contribution 0.269 -0.539 1.229 1.369 sum 0.876 -1.572 -20.390 20.469 Atomic orbital electron populations 1.21795 0.89780 1.03195 1.04630 1.20100 0.99489 1.00629 0.85409 0.84543 1.24415 0.77065 0.82889 0.85716 1.90623 1.36896 1.27343 1.87736 1.86512 1.69610 1.56199 1.15487 1.23137 0.97721 0.94782 0.82632 1.18975 0.96335 0.95876 0.89367 1.21397 1.32861 1.13169 0.91468 0.91886 1.25956 0.95012 0.95990 1.02262 1.70093 1.37946 1.25467 1.22975 0.85272 0.78338 0.78573 0.78091 1.18757 1.19951 1.19953 1.19458 0.99751 0.94783 0.95147 1.21330 0.96612 1.01050 0.94443 1.21467 1.00097 0.95169 0.97700 1.21521 0.97479 0.95120 0.99809 1.21378 0.98633 1.00761 0.94370 1.21038 0.99852 0.94359 0.97308 0.92566 0.90969 0.88349 0.92481 0.92518 0.97436 0.97394 0.92280 0.83910 0.83272 0.83568 0.84671 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.94 71.98 0.64 -2.27 16 2 C -0.04 -0.94 3.01 -12.29 -0.04 -0.98 16 3 H 0.14 2.77 7.88 -2.39 -0.02 2.75 16 4 C 0.45 16.21 7.12 71.23 0.51 16.72 16 5 O -0.54 -21.99 14.86 21.98 0.33 -21.66 16 6 O -0.36 -14.78 10.12 -51.41 -0.52 -15.30 16 7 C 0.09 4.19 5.40 71.98 0.39 4.58 16 8 C 0.03 1.72 5.35 29.85 0.16 1.88 16 9 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 10 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 11 C 0.01 0.39 5.46 84.65 0.46 0.85 16 12 N -0.93 -55.56 13.29 21.44 0.28 -55.28 16 13 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 14 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 C -0.09 -2.24 4.40 -19.86 -0.09 -2.33 16 18 C -0.12 -2.34 9.67 22.27 0.22 -2.12 16 19 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 20 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 21 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 22 C -0.11 -2.76 7.94 22.27 0.18 -2.58 16 23 H 0.06 1.25 7.39 -2.39 -0.02 1.23 16 24 H 0.07 1.63 8.11 -2.39 -0.02 1.61 16 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 2.62 8.13 -2.38 -0.02 2.60 16 27 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 28 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.14 2.17 7.95 -2.91 -0.02 2.15 16 32 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 33 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.11 2.88 7.52 -2.91 -0.02 2.86 16 Total: -1.00 -68.77 305.43 6.51 -62.26 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.06 Total: 8.28 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 3.33 Total: -24.21 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.28 Total: -55.28 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.19 Total: -36.96 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.77 6.51 -62.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181662145.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.905 kcal (2) G-P(sol) polarization free energy of solvation -68.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds