Wall clock time and date at job start Thu Apr 9 2020 12:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86803 * 119.99400 * 2 1 4 4 H 1.48493 * 109.47356 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47264 * 119.99932 * 3 2 1 6 6 H 1.48496 * 109.46711 * 239.99667 * 3 2 1 7 7 C 1.40055 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99248 * 356.74648 * 7 2 1 9 9 C 1.41269 * 119.99950 * 176.73889 * 7 2 1 10 10 C 1.40722 * 120.15280 * 186.17109 * 9 7 2 11 11 N 1.31909 * 119.92656 * 179.75899 * 10 9 7 12 12 C 1.32163 * 120.26924 * 0.52202 * 11 10 9 13 13 C 1.39915 * 120.31919 * 359.73414 * 12 11 10 14 14 N 1.38834 * 119.96476 * 180.02562 * 13 12 11 15 15 C 1.46498 * 120.00272 * 359.97438 * 14 13 12 16 16 C 1.52996 * 109.47279 * 180.02562 * 15 14 13 17 17 N 1.46890 * 112.85072 * 48.80583 * 16 15 14 18 18 C 1.53778 * 113.61365 * 277.49691 * 16 15 14 19 19 C 1.53785 * 87.08270 * 220.02152 * 18 16 15 20 20 C 1.53777 * 87.08143 * 25.43186 * 19 18 16 21 21 N 1.32258 * 120.07103 * 359.97438 * 13 12 11 22 22 H 0.97005 * 119.99105 * 175.08497 * 1 2 3 23 23 H 1.07998 * 120.04023 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.83658 * 179.75210 * 12 11 10 25 25 H 0.97001 * 119.99915 * 179.97438 * 14 13 12 26 26 H 1.09001 * 109.46941 * 300.00202 * 15 14 13 27 27 H 1.09005 * 109.46796 * 59.99738 * 15 14 13 28 28 H 1.00902 * 111.00463 * 309.66680 * 17 16 15 29 29 H 1.00899 * 111.00403 * 73.61932 * 17 16 15 30 30 H 1.08997 * 113.61858 * 334.56778 * 18 16 15 31 31 H 1.09003 * 113.61339 * 105.47569 * 18 16 15 32 32 H 1.09008 * 113.61002 * 270.88697 * 19 18 16 33 33 H 1.08995 * 113.69410 * 139.99738 * 19 18 16 34 34 H 1.08992 * 113.61786 * 220.02155 * 20 19 18 35 35 H 1.09007 * 113.68853 * 89.12532 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6179 0.0000 4 1 1.2761 2.7465 -0.0006 5 1 3.0949 1.6967 1.2125 6 1 3.0949 1.6965 -1.2125 7 6 2.0077 -1.2128 0.0005 8 1 1.4690 -2.1474 0.0540 9 6 3.4187 -1.2137 -0.0691 10 6 4.1192 -2.4272 -0.1995 11 7 5.4365 -2.4224 -0.2689 12 6 6.1028 -1.2828 -0.2060 13 6 5.4175 -0.0704 -0.0709 14 7 6.1248 1.1225 -0.0061 15 6 7.5879 1.1114 -0.0786 16 6 8.1141 2.5450 0.0157 17 7 7.5238 3.2970 1.1310 18 6 8.0855 3.3010 -1.3231 19 6 9.4499 3.8910 -0.9291 20 6 9.6473 2.6441 -0.0510 21 7 4.0965 -0.0595 -0.0059 22 1 -0.4849 -0.8371 -0.0720 23 1 3.5788 -3.3610 -0.2471 24 1 7.1815 -1.2873 -0.2595 25 1 5.6502 1.9633 0.0872 26 1 7.9882 0.5228 0.7469 27 1 7.9015 0.6704 -1.0249 28 1 6.5174 3.2255 1.1229 29 1 7.9011 2.9890 2.0146 30 1 8.1275 2.6477 -2.1945 31 1 7.2908 4.0442 -1.3879 32 1 9.3769 4.8183 -0.3607 33 1 10.1544 3.9572 -1.7582 34 1 10.1133 2.8569 0.9110 35 1 10.1164 1.8103 -0.5735 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163327417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:05 Heat of formation + Delta-G solvation = 47.622427 kcal Electronic energy + Delta-G solvation = -17935.017545 eV Core-core repulsion = 15160.550918 eV Total energy + Delta-G solvation = -2774.466627 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87913 -39.13698 -35.34433 -34.12229 -32.44270 -31.68775 -29.60197 -26.83811 -25.89525 -25.74144 -22.81205 -22.58990 -20.78979 -18.94964 -18.51574 -17.21075 -16.10919 -15.71387 -15.61313 -15.07120 -14.88335 -14.29536 -14.16839 -13.77596 -13.30485 -12.99914 -12.77223 -12.42769 -12.35897 -11.67397 -11.39604 -11.11966 -11.05963 -10.99408 -10.74053 -10.38971 -10.14206 -9.89823 -9.42740 -9.15057 -8.90732 -8.85059 -7.78044 -7.23456 -7.09494 -4.96888 2.45107 2.71346 3.46800 3.57037 3.60243 3.92992 4.22796 4.30579 4.45707 4.58195 4.64289 4.75430 4.76495 5.30921 5.44080 5.57245 5.61833 5.63665 5.65041 5.78669 5.82507 5.92582 5.96220 6.12988 6.19830 6.23561 6.49110 6.72960 7.02987 7.23236 7.25751 7.28272 7.53612 7.75720 8.00653 8.21292 8.46752 8.96649 9.42644 9.83524 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.027252 B = 0.006819 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.190246 B = 4104.939190 C = 4909.244631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.042 3.958 3 Si 1.161 2.839 4 H -0.332 1.332 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.453 4.453 8 H 0.089 0.911 9 C 0.238 3.762 10 C -0.091 4.091 11 N -0.396 5.396 12 C -0.168 4.168 13 C 0.404 3.596 14 N -0.732 5.732 15 C 0.116 3.884 16 C 0.078 3.922 17 N -0.820 5.820 18 C -0.127 4.127 19 C -0.128 4.128 20 C -0.125 4.125 21 N -0.598 5.598 22 H 0.286 0.714 23 H 0.136 0.864 24 H 0.128 0.872 25 H 0.392 0.608 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.345 0.655 29 H 0.344 0.656 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 6.810 -0.106 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.181 4.181 3 Si 0.996 3.004 4 H -0.266 1.266 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.486 4.486 8 H 0.107 0.893 9 C 0.112 3.888 10 C -0.262 4.262 11 N -0.106 5.106 12 C -0.328 4.328 13 C 0.163 3.837 14 N -0.370 5.370 15 C -0.011 4.011 16 C -0.016 4.016 17 N -0.351 5.351 18 C -0.165 4.165 19 C -0.165 4.165 20 C -0.163 4.163 21 N -0.331 5.331 22 H 0.098 0.902 23 H 0.153 0.847 24 H 0.146 0.854 25 H 0.228 0.772 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.160 0.840 29 H 0.157 0.843 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.139 8.878 -0.398 16.700 hybrid contribution -0.577 -2.596 0.333 2.680 sum 13.562 6.282 -0.065 14.947 Atomic orbital electron populations 1.70645 1.08186 1.33056 1.29482 1.27882 0.95308 1.06373 0.88519 0.81700 0.70430 0.69297 0.78943 1.26557 1.21712 1.21805 1.20820 0.90151 0.96637 1.40995 0.89285 1.19146 0.94345 0.87314 0.87952 1.22823 0.89816 0.97824 1.15782 1.67529 1.09443 1.28729 1.04933 1.21833 0.98526 0.87382 1.25077 1.19079 0.89216 0.86429 0.88958 1.44181 1.04576 1.05919 1.82275 1.21893 0.80503 0.97189 1.01558 1.22219 0.95589 0.90306 0.93448 1.58811 1.11304 1.59722 1.05289 1.22980 0.98277 0.99622 0.95596 1.22676 0.96922 0.97797 0.99148 1.22954 0.93585 0.98902 1.00853 1.66650 1.05425 1.28874 1.32164 0.90245 0.84658 0.85442 0.77235 0.92393 0.91733 0.83996 0.84252 0.89782 0.90936 0.89693 0.91903 0.91050 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.01 13.65 55.55 0.76 -20.25 16 2 C 0.04 1.12 5.52 -17.34 -0.10 1.02 16 3 Si 1.16 27.93 25.46 -169.99 -4.33 23.60 16 4 H -0.33 -7.91 7.11 56.52 0.40 -7.51 16 5 H -0.29 -6.89 6.95 56.52 0.39 -6.49 16 6 H -0.29 -7.05 6.94 56.52 0.39 -6.66 16 7 C -0.45 -12.08 9.59 -37.75 -0.36 -12.44 16 8 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.24 6.24 6.41 -84.83 -0.54 5.69 16 10 C -0.09 -2.26 10.97 -16.58 -0.18 -2.44 16 11 N -0.40 -9.56 10.47 -12.11 -0.13 -9.69 16 12 C -0.17 -3.75 10.49 -16.78 -0.18 -3.93 16 13 C 0.40 9.03 7.66 -155.01 -1.19 7.84 16 14 N -0.73 -12.84 5.50 -60.28 -0.33 -13.17 16 15 C 0.12 1.56 4.52 -4.04 -0.02 1.54 16 16 C 0.08 0.86 1.29 -130.79 -0.17 0.69 16 17 N -0.82 -8.97 9.25 1.39 0.01 -8.96 16 18 C -0.13 -1.37 7.44 -25.92 -0.19 -1.57 16 19 C -0.13 -1.18 8.00 -25.92 -0.21 -1.38 16 20 C -0.12 -1.13 7.44 -25.92 -0.19 -1.32 16 21 N -0.60 -15.10 4.76 -10.14 -0.05 -15.15 16 22 H 0.29 7.20 8.72 -40.82 -0.36 6.84 16 23 H 0.14 3.10 8.06 -52.49 -0.42 2.68 16 24 H 0.13 2.47 6.70 -52.49 -0.35 2.12 16 25 H 0.39 6.74 7.03 -40.82 -0.29 6.45 16 26 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 27 H 0.06 0.87 7.74 -51.93 -0.40 0.47 16 28 H 0.35 4.15 7.14 -39.29 -0.28 3.87 16 29 H 0.34 3.39 9.07 -39.29 -0.36 3.03 16 30 H 0.08 0.91 7.96 -51.93 -0.41 0.49 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.71 8.10 -51.92 -0.42 0.29 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -28.95 288.49 -7.67 -36.63 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.63 Total: 8.94 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -3.33 Total: -6.29 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: 0.26 Total: -67.22 kcal Atomic # 14 Polarization: 27.93 SS G_CDS: -4.33 Total: 23.60 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.95 -7.67 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163327417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.248 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds