Wall clock time and date at job start Thu Apr 9 2020 12:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86803 * 119.99400 * 2 1 4 4 H 1.48493 * 109.47356 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47264 * 119.99932 * 3 2 1 6 6 H 1.48496 * 109.46711 * 239.99667 * 3 2 1 7 7 C 1.40055 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99248 * 356.74648 * 7 2 1 9 9 C 1.41269 * 119.99950 * 176.73889 * 7 2 1 10 10 C 1.40722 * 120.15280 * 186.17109 * 9 7 2 11 11 N 1.31909 * 119.92656 * 179.75899 * 10 9 7 12 12 C 1.32163 * 120.26924 * 0.52202 * 11 10 9 13 13 C 1.39915 * 120.31919 * 359.73414 * 12 11 10 14 14 N 1.38834 * 119.96476 * 180.02562 * 13 12 11 15 15 C 1.46498 * 120.00272 * 359.97438 * 14 13 12 16 16 C 1.52996 * 109.47279 * 180.02562 * 15 14 13 17 17 N 1.46890 * 112.85072 * 48.80583 * 16 15 14 18 18 C 1.53778 * 113.61365 * 277.49691 * 16 15 14 19 19 C 1.53785 * 87.08270 * 220.02152 * 18 16 15 20 20 C 1.53777 * 87.08143 * 25.43186 * 19 18 16 21 21 N 1.32258 * 120.07103 * 359.97438 * 13 12 11 22 22 H 0.97005 * 119.99105 * 175.08497 * 1 2 3 23 23 H 1.07998 * 120.04023 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.83658 * 179.75210 * 12 11 10 25 25 H 0.97001 * 119.99915 * 179.97438 * 14 13 12 26 26 H 1.09001 * 109.46941 * 300.00202 * 15 14 13 27 27 H 1.09005 * 109.46796 * 59.99738 * 15 14 13 28 28 H 1.00902 * 111.00463 * 309.66680 * 17 16 15 29 29 H 1.00899 * 111.00403 * 73.61932 * 17 16 15 30 30 H 1.08997 * 113.61858 * 334.56778 * 18 16 15 31 31 H 1.09003 * 113.61339 * 105.47569 * 18 16 15 32 32 H 1.09008 * 113.61002 * 270.88697 * 19 18 16 33 33 H 1.08995 * 113.69410 * 139.99738 * 19 18 16 34 34 H 1.08992 * 113.61786 * 220.02155 * 20 19 18 35 35 H 1.09007 * 113.68853 * 89.12532 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6179 0.0000 4 1 1.2761 2.7465 -0.0006 5 1 3.0949 1.6967 1.2125 6 1 3.0949 1.6965 -1.2125 7 6 2.0077 -1.2128 0.0005 8 1 1.4690 -2.1474 0.0540 9 6 3.4187 -1.2137 -0.0691 10 6 4.1192 -2.4272 -0.1995 11 7 5.4365 -2.4224 -0.2689 12 6 6.1028 -1.2828 -0.2060 13 6 5.4175 -0.0704 -0.0709 14 7 6.1248 1.1225 -0.0061 15 6 7.5879 1.1114 -0.0786 16 6 8.1141 2.5450 0.0157 17 7 7.5238 3.2970 1.1310 18 6 8.0855 3.3010 -1.3231 19 6 9.4499 3.8910 -0.9291 20 6 9.6473 2.6441 -0.0510 21 7 4.0965 -0.0595 -0.0059 22 1 -0.4849 -0.8371 -0.0720 23 1 3.5788 -3.3610 -0.2471 24 1 7.1815 -1.2873 -0.2595 25 1 5.6502 1.9633 0.0872 26 1 7.9882 0.5228 0.7469 27 1 7.9015 0.6704 -1.0249 28 1 6.5174 3.2255 1.1229 29 1 7.9011 2.9890 2.0146 30 1 8.1275 2.6477 -2.1945 31 1 7.2908 4.0442 -1.3879 32 1 9.3769 4.8183 -0.3607 33 1 10.1544 3.9572 -1.7582 34 1 10.1133 2.8569 0.9110 35 1 10.1164 1.8103 -0.5735 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163327417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:04 Heat of formation + Delta-G solvation = 27.326646 kcal Electronic energy + Delta-G solvation = -17935.897636 eV Core-core repulsion = 15160.550918 eV Total energy + Delta-G solvation = -2775.346718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.35444 -40.39552 -36.84839 -36.03020 -34.24808 -32.76314 -31.22079 -28.06297 -27.74373 -26.57433 -24.66353 -23.70455 -22.42543 -20.51858 -19.74962 -18.74792 -17.76273 -17.23865 -16.77598 -16.27130 -16.09510 -15.80834 -15.50707 -15.28717 -14.91346 -14.58395 -14.39312 -13.81726 -13.27312 -13.15163 -13.03078 -12.98483 -12.47432 -12.04462 -11.88567 -11.71188 -11.47210 -11.37276 -11.13818 -11.06124 -10.69534 -9.76767 -9.72536 -9.16882 -8.77822 -6.96245 0.53972 0.82401 1.53500 1.67414 1.94415 2.21154 2.38904 2.61717 3.39149 3.51442 3.59704 3.75753 3.83270 3.99413 4.01306 4.10346 4.26113 4.50225 4.58125 4.66246 4.74708 4.85466 4.87650 4.91857 5.13658 5.14191 5.27863 5.36958 5.40705 5.49274 5.77726 5.88006 6.12341 6.28963 6.36414 6.41939 6.64093 7.09912 7.54420 7.83819 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.027252 B = 0.006819 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.190246 B = 4104.939190 C = 4909.244631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.017 3.983 3 Si 1.194 2.806 4 H -0.329 1.329 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.482 4.482 8 H 0.080 0.920 9 C 0.229 3.771 10 C -0.117 4.117 11 N -0.402 5.402 12 C -0.154 4.154 13 C 0.397 3.603 14 N -0.719 5.719 15 C 0.111 3.889 16 C 0.078 3.922 17 N -0.820 5.820 18 C -0.134 4.134 19 C -0.121 4.121 20 C -0.115 4.115 21 N -0.615 5.615 22 H 0.287 0.713 23 H 0.144 0.856 24 H 0.163 0.837 25 H 0.395 0.605 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.338 0.662 29 H 0.351 0.649 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.729 7.761 -0.091 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.202 4.202 3 Si 1.028 2.972 4 H -0.263 1.263 5 H -0.215 1.215 6 H -0.224 1.224 7 C -0.516 4.516 8 H 0.098 0.902 9 C 0.103 3.897 10 C -0.285 4.285 11 N -0.113 5.113 12 C -0.316 4.316 13 C 0.155 3.845 14 N -0.354 5.354 15 C -0.015 4.015 16 C -0.016 4.016 17 N -0.351 5.351 18 C -0.172 4.172 19 C -0.158 4.158 20 C -0.153 4.153 21 N -0.349 5.349 22 H 0.098 0.902 23 H 0.161 0.839 24 H 0.180 0.820 25 H 0.231 0.769 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.165 0.835 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.005 9.828 -0.373 19.644 hybrid contribution -1.206 -2.864 0.314 3.123 sum 15.799 6.964 -0.059 17.266 Atomic orbital electron populations 1.70652 1.08376 1.33155 1.31302 1.28540 0.95594 1.07873 0.88189 0.81241 0.69689 0.67707 0.78535 1.26295 1.21501 1.22363 1.20817 0.90784 0.96504 1.43464 0.90218 1.19262 0.94387 0.88252 0.87793 1.22897 0.90276 0.97875 1.17444 1.67581 1.09098 1.29641 1.04947 1.22465 1.00085 0.86830 1.22225 1.19416 0.88620 0.88303 0.88201 1.44395 1.06186 1.04487 1.80376 1.22230 0.77755 0.99325 1.02211 1.22296 0.97025 0.88674 0.93581 1.58824 1.10822 1.59659 1.05789 1.23044 0.99027 0.99565 0.95568 1.22623 0.96049 0.97641 0.99515 1.22962 0.91731 0.99163 1.01421 1.66636 1.06941 1.28682 1.32667 0.90230 0.83868 0.82001 0.76931 0.91509 0.90990 0.84765 0.83465 0.89685 0.92177 0.90100 0.90536 0.90214 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.84 13.65 21.84 0.30 -43.54 16 2 C 0.02 0.93 5.52 85.30 0.47 1.40 16 3 Si 1.19 56.74 25.46 68.60 1.75 58.48 16 4 H -0.33 -15.32 7.11 99.48 0.71 -14.61 16 5 H -0.29 -13.35 6.95 99.48 0.69 -12.65 16 6 H -0.29 -14.09 6.94 99.48 0.69 -13.40 16 7 C -0.48 -26.30 9.59 23.46 0.22 -26.08 16 8 H 0.08 4.34 8.06 -2.91 -0.02 4.31 16 9 C 0.23 12.05 6.41 40.17 0.26 12.31 16 10 C -0.12 -5.77 10.97 85.29 0.94 -4.83 16 11 N -0.40 -18.71 10.47 -192.23 -2.01 -20.72 16 12 C -0.15 -6.40 10.49 85.05 0.89 -5.51 16 13 C 0.40 16.88 7.66 133.35 1.02 17.90 16 14 N -0.72 -23.29 5.50 -344.64 -1.90 -25.19 16 15 C 0.11 2.58 4.52 86.38 0.39 2.97 16 16 C 0.08 1.47 1.29 4.06 0.01 1.48 16 17 N -0.82 -15.84 9.25 -149.51 -1.38 -17.23 16 18 C -0.13 -2.55 7.44 31.12 0.23 -2.32 16 19 C -0.12 -1.83 8.00 31.12 0.25 -1.59 16 20 C -0.11 -1.64 7.44 31.12 0.23 -1.41 16 21 N -0.62 -30.46 4.76 -186.01 -0.89 -31.35 16 22 H 0.29 14.83 8.72 -92.70 -0.81 14.02 16 23 H 0.14 6.64 8.06 -2.91 -0.02 6.61 16 24 H 0.16 5.56 6.70 -2.91 -0.02 5.54 16 25 H 0.39 12.69 7.03 -92.71 -0.65 12.03 16 26 H 0.07 1.50 7.93 -2.39 -0.02 1.48 16 27 H 0.07 1.63 7.74 -2.38 -0.02 1.61 16 28 H 0.34 7.42 7.14 -89.69 -0.64 6.78 16 29 H 0.35 5.93 9.07 -89.69 -0.81 5.12 16 30 H 0.08 1.60 7.96 -2.39 -0.02 1.58 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 1.20 8.10 -2.38 -0.02 1.18 16 Total: -1.00 -60.80 288.49 -0.27 -61.07 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -1.05 Total: 24.15 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 4.91 Total: -5.68 kcal Atomic # 7 Polarization: -132.15 SS G_CDS: -5.88 Total: -138.02 kcal Atomic # 14 Polarization: 56.74 SS G_CDS: 1.75 Total: 58.48 kcal Total: -60.80 -0.27 -61.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163327417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.397 kcal (2) G-P(sol) polarization free energy of solvation -60.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds