Wall clock time and date at job start Thu Apr 9 2020 12:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.47960 * 111.00018 * 2 1 4 4 C 1.53940 * 86.18164 * 222.41902 * 3 2 1 5 5 C 1.53004 * 113.73499 * 138.07806 * 4 3 2 6 6 N 1.46495 * 109.46718 * 176.89603 * 5 4 3 7 7 C 1.38803 * 119.99679 * 180.02562 * 6 5 4 8 8 C 1.40090 * 120.75929 * 180.02562 * 7 6 5 9 9 N 1.31660 * 119.13701 * 179.97438 * 8 7 6 10 10 C 1.33594 * 120.79493 * 359.97438 * 9 8 7 11 11 C 1.41144 * 119.17343 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99977 * 359.97438 * 11 10 9 13 13 C 1.40045 * 120.00031 * 180.02562 * 11 10 9 14 14 N 1.30730 * 120.00049 * 359.72571 * 13 11 10 15 15 Si 1.86800 * 120.00245 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46757 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47323 * 119.99944 * 15 13 11 18 18 H 1.48501 * 109.47344 * 240.00269 * 15 13 11 19 19 N 1.33604 * 121.65774 * 0.27816 * 10 9 8 20 20 C 1.31665 * 120.78717 * 359.43912 * 19 10 9 21 21 C 1.48188 * 111.07439 * 260.56695 * 2 1 3 22 22 H 1.09004 * 109.47470 * 60.00242 * 1 2 3 23 23 H 1.08999 * 109.47425 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47405 * 299.99848 * 1 2 3 25 25 H 1.08995 * 113.76574 * 108.09952 * 3 2 1 26 26 H 1.09008 * 113.85675 * 336.74632 * 3 2 1 27 27 H 1.09004 * 113.72868 * 269.25644 * 4 3 2 28 28 H 1.08997 * 109.47098 * 56.89868 * 5 4 3 29 29 H 1.08993 * 109.46841 * 296.89730 * 5 4 3 30 30 H 0.97001 * 120.00623 * 0.02562 * 6 5 4 31 31 H 1.07995 * 120.42708 * 359.95313 * 8 7 6 32 32 H 0.97000 * 120.00283 * 180.02562 * 14 13 11 33 33 H 1.08006 * 120.42947 * 180.27667 * 20 19 10 34 34 H 1.09001 * 113.75870 * 23.23592 * 21 2 1 35 35 H 1.09000 * 113.82702 * 251.81314 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8793 -1.0361 5 6 3.2610 1.8570 -2.1882 6 7 4.2977 1.3223 -3.0744 7 6 4.6885 2.0392 -4.1969 8 6 5.6779 1.5427 -5.0555 9 7 6.0236 2.2489 -6.1115 10 6 5.4430 3.4244 -6.3682 11 6 5.8395 4.1528 -7.5103 12 1 6.6039 3.7587 -8.1636 13 6 5.2427 5.3871 -7.7956 14 7 4.3144 5.8622 -7.0072 15 14 5.7670 6.3509 -9.3075 16 1 6.8223 5.5987 -10.0326 17 1 4.5965 6.5472 -10.1999 18 1 6.2995 7.6733 -8.8915 19 7 4.4998 3.9301 -5.5684 20 6 4.1015 3.2749 -4.4981 21 6 2.0018 -0.2266 -1.3641 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 2.4459 1.6803 0.9482 26 1 1.3020 2.1212 -0.3936 27 1 3.9458 0.5068 -0.5953 28 1 3.5851 2.8176 -1.7880 29 1 2.3365 1.9907 -2.7498 30 1 4.7112 0.4674 -2.8768 31 1 6.1511 0.5931 -4.8535 32 1 3.9007 6.7170 -7.2050 33 1 3.3354 3.6871 -3.8579 34 1 1.3043 0.0404 -2.1580 35 1 2.4505 -1.2101 -1.5037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170253890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:02 Heat of formation + Delta-G solvation = 88.801192 kcal Electronic energy + Delta-G solvation = -17251.249514 eV Core-core repulsion = 14478.568533 eV Total energy + Delta-G solvation = -2772.680982 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.11515 -38.88520 -35.43571 -33.40156 -31.69211 -31.27238 -28.97249 -26.75284 -26.28239 -24.72913 -23.24225 -22.06324 -20.92078 -19.76622 -17.78144 -16.63737 -16.15234 -15.60941 -15.29557 -14.96968 -14.79427 -14.30002 -14.02530 -13.66091 -13.07736 -12.87897 -12.63430 -12.54899 -11.95419 -11.65421 -11.25995 -11.21874 -11.15894 -10.88133 -10.77359 -10.54920 -10.14441 -9.78576 -9.37064 -9.15876 -9.01697 -8.88809 -7.24404 -6.75578 -6.38881 -4.35128 2.75547 2.93245 3.14339 3.20356 3.20573 3.75467 3.99972 4.03004 4.45894 4.74526 4.78765 4.89644 5.12324 5.23062 5.29790 5.31551 5.49533 5.58934 5.62702 5.74740 5.80415 5.93306 5.97853 6.03270 6.09262 6.20880 6.30461 6.49868 6.81428 7.11418 7.18217 7.40689 8.16440 8.30648 8.53534 8.59724 8.76992 9.23969 10.26138 10.41928 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.047897 B = 0.004077 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.447661 B = 6865.447043 C = 7247.699162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.489 5.489 3 C 0.008 3.992 4 C -0.123 4.123 5 C 0.147 3.853 6 N -0.750 5.750 7 C -0.039 4.039 8 C 0.102 3.898 9 N -0.566 5.566 10 C 0.369 3.631 11 C -0.414 4.414 12 H 0.089 0.911 13 C 0.068 3.932 14 N -0.727 5.727 15 Si 0.914 3.086 16 H -0.260 1.260 17 H -0.274 1.274 18 H -0.274 1.274 19 N -0.476 5.476 20 C 0.100 3.900 21 C 0.007 3.993 22 H 0.036 0.964 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.386 0.614 31 H 0.126 0.874 32 H 0.270 0.730 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 -6.372 10.734 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.211 5.211 3 C -0.121 4.121 4 C -0.142 4.142 5 C 0.021 3.979 6 N -0.388 5.388 7 C -0.144 4.144 8 C -0.072 4.072 9 N -0.285 5.285 10 C 0.127 3.873 11 C -0.451 4.451 12 H 0.107 0.893 13 C -0.156 4.156 14 N -0.351 5.351 15 Si 0.738 3.262 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.199 1.199 19 N -0.193 5.193 20 C -0.077 4.077 21 C -0.121 4.121 22 H 0.054 0.946 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.091 0.909 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.969 -5.941 10.479 13.444 hybrid contribution -0.459 0.128 -0.241 0.534 sum -6.429 -5.813 10.238 13.414 Atomic orbital electron populations 1.22855 0.89803 1.02305 1.01089 1.68496 1.09009 1.18634 1.24953 1.23933 0.96848 0.91454 0.99865 1.23177 0.98650 0.96329 0.96025 1.21021 0.91588 0.95803 0.89489 1.43483 1.44940 1.23700 1.26669 1.19201 1.04208 0.97566 0.93444 1.22189 0.94842 0.98610 0.91592 1.68546 1.30900 1.09627 1.19458 1.19813 0.87684 0.86578 0.93177 1.19125 1.18898 1.01342 1.05760 0.89307 1.26002 0.94156 0.97727 0.97729 1.70157 1.16620 1.15747 1.32535 0.86173 0.79443 0.79448 0.81139 1.18339 1.19944 1.19935 1.69281 1.14400 1.32225 1.03357 1.22672 0.98529 0.90346 0.96138 1.24113 0.97021 1.00299 0.90711 0.94577 0.91286 0.91458 0.89223 0.90891 0.87949 0.93116 0.93541 0.78164 0.85660 0.91853 0.85820 0.90872 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.65 60.06 0.58 0.48 16 2 N -0.49 -5.15 6.55 -246.37 -1.61 -6.77 16 3 C 0.01 0.08 7.55 -2.76 -0.02 0.06 16 4 C -0.12 -1.32 3.93 -89.69 -0.35 -1.67 16 5 C 0.15 2.00 4.78 -4.04 -0.02 1.98 16 6 N -0.75 -12.14 5.71 -58.23 -0.33 -12.48 16 7 C -0.04 -0.84 6.72 -83.32 -0.56 -1.40 16 8 C 0.10 2.34 11.20 -16.93 -0.19 2.15 16 9 N -0.57 -15.25 10.34 -12.49 -0.13 -15.38 16 10 C 0.37 10.65 7.35 -158.23 -1.16 9.49 16 11 C -0.41 -11.72 9.35 -37.80 -0.35 -12.07 16 12 H 0.09 2.43 7.85 -52.49 -0.41 2.02 16 13 C 0.07 1.79 5.50 -17.34 -0.10 1.70 16 14 N -0.73 -19.69 11.41 55.55 0.63 -19.06 16 15 Si 0.91 19.17 29.56 -169.99 -5.02 14.14 16 16 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 N -0.48 -13.36 7.84 -12.49 -0.10 -13.46 16 20 C 0.10 2.39 10.58 -16.93 -0.18 2.21 16 21 C 0.01 0.07 7.54 -2.64 -0.02 0.05 16 22 H 0.04 0.32 7.63 -51.93 -0.40 -0.08 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.69 7.88 -51.92 -0.41 0.28 16 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.72 7.99 -51.93 -0.41 0.31 16 29 H 0.05 0.67 7.72 -51.93 -0.40 0.26 16 30 H 0.39 5.46 8.50 -40.82 -0.35 5.11 16 31 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 32 H 0.27 6.60 8.29 -40.82 -0.34 6.26 16 33 H 0.12 2.65 6.88 -52.48 -0.36 2.29 16 34 H 0.07 0.79 7.40 -51.93 -0.38 0.41 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -31.06 295.79 -9.28 -40.34 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.80 Total: 5.23 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.37 Total: 2.97 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -1.54 Total: -67.15 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.06 -9.28 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170253890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.144 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds