Wall clock time and date at job start Thu Apr 9 2020 12:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.47960 * 111.00018 * 2 1 4 4 C 1.53940 * 86.18164 * 222.41902 * 3 2 1 5 5 C 1.53004 * 113.73499 * 138.07806 * 4 3 2 6 6 N 1.46495 * 109.46718 * 176.89603 * 5 4 3 7 7 C 1.38803 * 119.99679 * 180.02562 * 6 5 4 8 8 C 1.40090 * 120.75929 * 180.02562 * 7 6 5 9 9 N 1.31660 * 119.13701 * 179.97438 * 8 7 6 10 10 C 1.33594 * 120.79493 * 359.97438 * 9 8 7 11 11 C 1.41144 * 119.17343 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99977 * 359.97438 * 11 10 9 13 13 C 1.40045 * 120.00031 * 180.02562 * 11 10 9 14 14 N 1.30730 * 120.00049 * 359.72571 * 13 11 10 15 15 Si 1.86800 * 120.00245 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46757 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47323 * 119.99944 * 15 13 11 18 18 H 1.48501 * 109.47344 * 240.00269 * 15 13 11 19 19 N 1.33604 * 121.65774 * 0.27816 * 10 9 8 20 20 C 1.31665 * 120.78717 * 359.43912 * 19 10 9 21 21 C 1.48188 * 111.07439 * 260.56695 * 2 1 3 22 22 H 1.09004 * 109.47470 * 60.00242 * 1 2 3 23 23 H 1.08999 * 109.47425 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47405 * 299.99848 * 1 2 3 25 25 H 1.08995 * 113.76574 * 108.09952 * 3 2 1 26 26 H 1.09008 * 113.85675 * 336.74632 * 3 2 1 27 27 H 1.09004 * 113.72868 * 269.25644 * 4 3 2 28 28 H 1.08997 * 109.47098 * 56.89868 * 5 4 3 29 29 H 1.08993 * 109.46841 * 296.89730 * 5 4 3 30 30 H 0.97001 * 120.00623 * 0.02562 * 6 5 4 31 31 H 1.07995 * 120.42708 * 359.95313 * 8 7 6 32 32 H 0.97000 * 120.00283 * 180.02562 * 14 13 11 33 33 H 1.08006 * 120.42947 * 180.27667 * 20 19 10 34 34 H 1.09001 * 113.75870 * 23.23592 * 21 2 1 35 35 H 1.09000 * 113.82702 * 251.81314 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8793 -1.0361 5 6 3.2610 1.8570 -2.1882 6 7 4.2977 1.3223 -3.0744 7 6 4.6885 2.0392 -4.1969 8 6 5.6779 1.5427 -5.0555 9 7 6.0236 2.2489 -6.1115 10 6 5.4430 3.4244 -6.3682 11 6 5.8395 4.1528 -7.5103 12 1 6.6039 3.7587 -8.1636 13 6 5.2427 5.3871 -7.7956 14 7 4.3144 5.8622 -7.0072 15 14 5.7670 6.3509 -9.3075 16 1 6.8223 5.5987 -10.0326 17 1 4.5965 6.5472 -10.1999 18 1 6.2995 7.6733 -8.8915 19 7 4.4998 3.9301 -5.5684 20 6 4.1015 3.2749 -4.4981 21 6 2.0018 -0.2266 -1.3641 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 2.4459 1.6803 0.9482 26 1 1.3020 2.1212 -0.3936 27 1 3.9458 0.5068 -0.5953 28 1 3.5851 2.8176 -1.7880 29 1 2.3365 1.9907 -2.7498 30 1 4.7112 0.4674 -2.8768 31 1 6.1511 0.5931 -4.8535 32 1 3.9007 6.7170 -7.2050 33 1 3.3354 3.6871 -3.8579 34 1 1.3043 0.0404 -2.1580 35 1 2.4505 -1.2101 -1.5037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170253890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:01 Heat of formation + Delta-G solvation = 65.304256 kcal Electronic energy + Delta-G solvation = -17252.268418 eV Core-core repulsion = 14478.568533 eV Total energy + Delta-G solvation = -2773.699885 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09658 -40.65235 -36.96308 -35.25060 -33.65173 -32.46323 -30.55246 -28.18206 -27.10939 -26.32181 -24.88120 -23.46247 -22.52877 -20.66729 -19.70861 -18.22745 -17.34167 -17.07713 -16.81782 -16.16531 -15.99595 -15.84121 -15.28692 -15.05144 -14.52874 -14.42799 -13.83977 -13.67463 -13.50071 -12.96442 -12.88371 -12.59707 -12.43132 -12.22782 -11.88618 -11.78317 -11.72405 -11.36405 -11.22151 -11.12096 -10.70053 -9.82229 -9.21383 -8.48142 -8.30260 -6.31754 0.88409 1.03543 1.43699 1.54041 1.60228 2.28049 2.75850 2.86150 2.95954 3.53679 3.78061 3.99653 4.04470 4.11431 4.16371 4.30037 4.32887 4.38166 4.47115 4.54409 4.62848 4.72062 4.76621 4.82563 4.91132 4.97177 5.19364 5.27842 5.32533 5.36372 5.59339 6.03616 6.25437 6.53583 6.60331 6.81076 7.11085 7.34680 8.31244 8.52281 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.047897 B = 0.004077 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.447661 B = 6865.447043 C = 7247.699162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.500 5.500 3 C 0.012 3.988 4 C -0.113 4.113 5 C 0.146 3.854 6 N -0.735 5.735 7 C -0.006 4.006 8 C 0.085 3.915 9 N -0.589 5.589 10 C 0.337 3.663 11 C -0.458 4.458 12 H 0.081 0.919 13 C 0.026 3.974 14 N -0.765 5.765 15 Si 0.994 3.006 16 H -0.259 1.259 17 H -0.264 1.264 18 H -0.264 1.264 19 N -0.507 5.507 20 C 0.074 3.926 21 C 0.008 3.992 22 H 0.036 0.964 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.401 0.599 31 H 0.164 0.836 32 H 0.278 0.722 33 H 0.144 0.856 34 H 0.069 0.931 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 -7.006 11.812 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.222 5.222 3 C -0.118 4.118 4 C -0.132 4.132 5 C 0.021 3.979 6 N -0.372 5.372 7 C -0.112 4.112 8 C -0.089 4.089 9 N -0.308 5.308 10 C 0.093 3.907 11 C -0.496 4.496 12 H 0.099 0.901 13 C -0.195 4.195 14 N -0.390 5.390 15 Si 0.814 3.186 16 H -0.182 1.182 17 H -0.188 1.188 18 H -0.188 1.188 19 N -0.224 5.224 20 C -0.101 4.101 21 C -0.121 4.121 22 H 0.054 0.946 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.127 0.873 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.236 0.764 31 H 0.181 0.819 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.393 -6.635 11.642 14.847 hybrid contribution -0.406 0.132 -0.333 0.541 sum -6.799 -6.503 11.310 14.711 Atomic orbital electron populations 1.22891 0.88889 1.02812 1.01543 1.68499 1.10037 1.18953 1.24730 1.23970 0.96443 0.91395 0.99955 1.23086 0.99277 0.95788 0.95094 1.21157 0.90350 0.96581 0.89826 1.43567 1.44861 1.23673 1.25061 1.19199 1.01912 0.96397 0.93719 1.22825 0.95407 0.99683 0.90962 1.68530 1.31470 1.09605 1.21203 1.20116 0.88820 0.87629 0.94132 1.19381 1.20348 1.03202 1.06670 0.90076 1.26898 0.93730 0.97958 1.00916 1.70229 1.17725 1.16523 1.34497 0.84988 0.79151 0.77722 0.76708 1.18229 1.18840 1.18830 1.69193 1.14955 1.33601 1.04682 1.23048 0.99561 0.91552 0.95969 1.24110 0.96820 1.00374 0.90800 0.94577 0.90819 0.90562 0.88239 0.90480 0.87281 0.93327 0.93889 0.76417 0.81867 0.91114 0.83880 0.91293 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 9.65 127.69 1.23 1.04 16 2 N -0.50 -9.28 6.55 -933.39 -6.12 -15.39 16 3 C 0.01 0.20 7.55 86.41 0.65 0.85 16 4 C -0.11 -2.13 3.93 -10.15 -0.04 -2.17 16 5 C 0.15 3.63 4.78 86.38 0.41 4.04 16 6 N -0.73 -21.90 5.71 -338.15 -1.93 -23.83 16 7 C -0.01 -0.23 6.72 38.94 0.26 0.03 16 8 C 0.09 3.80 11.20 85.17 0.95 4.76 16 9 N -0.59 -32.18 10.34 -193.42 -2.00 -34.18 16 10 C 0.34 20.04 7.35 134.95 0.99 21.03 16 11 C -0.46 -26.92 9.35 23.42 0.22 -26.71 16 12 H 0.08 4.65 7.85 -2.91 -0.02 4.63 16 13 C 0.03 1.38 5.50 85.30 0.47 1.85 16 14 N -0.77 -42.48 11.41 21.84 0.25 -42.23 16 15 Si 0.99 39.98 29.56 68.60 2.03 42.00 16 16 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 19 N -0.51 -29.18 7.84 -193.42 -1.52 -30.69 16 20 C 0.07 3.55 10.58 85.17 0.90 4.45 16 21 C 0.01 0.14 7.54 86.36 0.65 0.79 16 22 H 0.04 0.56 7.63 -2.39 -0.02 0.54 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 1.26 7.88 -2.38 -0.02 1.24 16 27 H 0.11 1.96 8.14 -2.38 -0.02 1.95 16 28 H 0.05 1.28 7.99 -2.39 -0.02 1.26 16 29 H 0.04 1.14 7.72 -2.39 -0.02 1.12 16 30 H 0.40 9.99 8.50 -92.71 -0.79 9.20 16 31 H 0.16 5.87 8.06 -2.91 -0.02 5.84 16 32 H 0.28 13.82 8.29 -92.71 -0.77 13.05 16 33 H 0.14 6.07 6.88 -2.91 -0.02 6.05 16 34 H 0.07 1.35 7.40 -2.39 -0.02 1.33 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -68.83 295.79 -2.27 -71.10 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.31 Total: 23.26 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 6.71 Total: 9.97 kcal Atomic # 7 Polarization: -135.02 SS G_CDS: -11.31 Total: -146.33 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.00 kcal Total: -68.83 -2.27 -71.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170253890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.408 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds