Wall clock time and date at job start Thu Apr 9 2020 12:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31884 * 119.62216 * 2 1 4 4 C 1.31856 * 121.72562 * 180.02562 * 3 2 1 5 5 C 1.38223 * 120.76567 * 359.97275 * 4 3 2 6 6 C 1.38625 * 119.15978 * 0.30777 * 5 4 3 7 7 C 1.38182 * 119.61296 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.42334 * 0.02562 * 7 2 1 9 9 N 1.46901 * 109.47090 * 79.99462 * 8 7 2 10 10 C 1.46901 * 110.99897 * 180.02562 * 9 8 7 11 11 H 1.09008 * 109.46533 * 35.00697 * 10 9 8 12 12 C 1.52990 * 109.47579 * 275.00424 * 10 9 8 13 13 C 1.53002 * 109.46974 * 154.99895 * 10 9 8 14 14 C 1.52999 * 109.47379 * 295.00591 * 13 10 9 15 15 C 1.50700 * 109.46678 * 179.97438 * 14 13 10 16 16 H 1.07990 * 120.00263 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99649 * 179.97438 * 15 14 13 18 18 N 1.31506 * 119.99995 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99746 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46992 * 90.00136 * 19 17 15 21 21 H 1.48500 * 109.46832 * 209.99942 * 19 17 15 22 22 H 1.48492 * 109.47449 * 330.00017 * 19 17 15 23 23 H 1.09000 * 109.47421 * 89.99775 * 1 2 3 24 24 H 1.09000 * 109.47282 * 210.00178 * 1 2 3 25 25 H 1.09010 * 109.46974 * 330.00160 * 1 2 3 26 26 H 1.08005 * 119.61482 * 179.97438 * 4 3 2 27 27 H 1.08002 * 120.41617 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.79223 * 179.72202 * 6 5 4 29 29 H 1.09002 * 109.47243 * 200.00126 * 8 7 2 30 30 H 1.09006 * 109.46611 * 320.00040 * 8 7 2 31 31 H 1.00900 * 110.99728 * 56.05160 * 9 8 7 32 32 H 1.09007 * 109.47120 * 60.00228 * 12 10 9 33 33 H 1.09001 * 109.47787 * 179.97438 * 12 10 9 34 34 H 1.08999 * 109.47520 * 300.00006 * 12 10 9 35 35 H 1.09002 * 109.46896 * 55.00508 * 13 10 9 36 36 H 1.08996 * 109.46847 * 175.00263 * 13 10 9 37 37 H 1.09002 * 109.47040 * 299.99829 * 14 13 10 38 38 H 1.09001 * 109.46936 * 59.99971 * 14 13 10 39 39 H 0.97000 * 120.00244 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1949 -0.0005 5 6 4.2267 0.0339 -0.0005 6 6 3.5765 -1.1904 -0.0064 7 6 2.1898 -1.2013 0.0005 8 6 1.4371 -2.5069 0.0005 9 7 0.9846 -2.8113 -1.3635 10 6 0.2448 -4.0798 -1.4020 11 1 -0.3261 -4.1954 -0.4806 12 6 1.2308 -5.2414 -1.5403 13 6 -0.7108 -4.0768 -2.5969 14 6 -1.7734 -2.9942 -2.3976 15 6 -2.7141 -2.9910 -3.5750 16 1 -2.5688 -3.6913 -4.3841 17 6 -3.7609 -2.0946 -3.6185 18 7 -4.5821 -2.0921 -4.6456 19 14 -4.0133 -0.8848 -2.2178 20 1 -3.2591 0.3630 -2.4995 21 1 -5.4591 -0.5710 -2.0893 22 1 -3.5225 -1.4845 -0.9511 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5139 26 1 3.9754 2.1528 -0.0009 27 1 5.3057 0.0801 -0.0005 28 1 4.1366 -2.1138 -0.0111 29 1 2.0921 -3.3040 0.3525 30 1 0.5733 -2.4283 0.6608 31 1 1.7614 -2.8257 -2.0073 32 1 1.9114 -5.2435 -0.6888 33 1 0.6819 -6.1827 -1.5683 34 1 1.8016 -5.1257 -2.4616 35 1 -0.1507 -3.8725 -3.5095 36 1 -1.1944 -5.0502 -2.6777 37 1 -2.3335 -3.1985 -1.4851 38 1 -1.2896 -2.0208 -2.3168 39 1 -5.3188 -1.4618 -4.6761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:21 Heat of formation + Delta-G solvation = 16.474122 kcal Electronic energy + Delta-G solvation = -18030.551130 eV Core-core repulsion = 15358.274154 eV Total energy + Delta-G solvation = -2672.276975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.36330 -37.38990 -34.02443 -32.97384 -32.66803 -30.77417 -29.17277 -27.56931 -25.61885 -24.89720 -22.45621 -21.47018 -21.06697 -19.87924 -16.87060 -16.58704 -16.34544 -15.51832 -15.30772 -14.34092 -14.24927 -14.04265 -13.72992 -13.13704 -12.96159 -12.81265 -12.58595 -12.40815 -12.35812 -12.16598 -11.92690 -11.69603 -11.39509 -11.08011 -10.81012 -10.46127 -9.87766 -9.77981 -9.61807 -9.51772 -9.39088 -9.01444 -8.80423 -8.41279 -8.06396 -5.93017 -3.89053 1.08205 1.24622 3.40866 3.47373 3.51454 3.73339 4.33082 4.47148 4.56678 4.73742 4.74354 4.93964 4.95649 5.21066 5.30865 5.39056 5.42847 5.50389 5.56960 5.66873 5.73435 5.77320 5.95947 6.00098 6.11314 6.17518 6.24261 6.29007 6.36060 6.52371 6.70880 6.74940 7.10063 7.28534 7.53044 7.62073 7.73396 7.95447 8.02975 8.67235 9.13240 9.71133 11.20959 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.006575 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.344155 B = 4257.852652 C = 5321.691375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.159 3.841 3 N -0.489 5.489 4 C 0.100 3.900 5 C -0.187 4.187 6 C -0.069 4.069 7 C -0.134 4.134 8 C 0.102 3.898 9 N -0.668 5.668 10 C 0.081 3.919 11 H 0.073 0.927 12 C -0.180 4.180 13 C -0.090 4.090 14 C -0.006 4.006 15 C -0.517 4.517 16 H 0.067 0.933 17 C 0.064 3.936 18 N -0.910 5.910 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.292 1.292 22 H -0.264 1.264 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.152 0.848 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.338 0.662 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.007 0.993 38 H 0.027 0.973 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.495 0.478 11.936 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.021 3.979 3 N -0.199 5.199 4 C -0.058 4.058 5 C -0.207 4.207 6 C -0.096 4.096 7 C -0.136 4.136 8 C -0.028 4.028 9 N -0.299 5.299 10 C -0.028 4.028 11 H 0.091 0.909 12 C -0.239 4.239 13 C -0.128 4.128 14 C -0.043 4.043 15 C -0.555 4.555 16 H 0.085 0.915 17 C -0.136 4.136 18 N -0.550 5.550 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.218 1.218 22 H -0.188 1.188 23 H 0.110 0.890 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.169 0.831 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.156 0.844 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.045 0.955 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.275 1.721 11.920 20.247 hybrid contribution 1.165 -0.747 0.645 1.527 sum 17.440 0.973 12.565 21.517 Atomic orbital electron populations 1.20805 0.88249 1.02797 1.04490 1.21237 0.97283 0.87387 0.91961 1.67582 1.09896 1.29517 1.12875 1.22713 0.89641 0.98298 0.95123 1.22025 1.01131 0.93524 1.04052 1.21471 0.93787 0.98311 0.95992 1.20675 0.93898 0.96576 1.02479 1.20849 0.97847 0.91521 0.92556 1.60570 1.29160 1.34664 1.05479 1.21798 0.94358 0.85688 1.00967 0.90879 1.22517 1.00022 1.00462 1.00922 1.21453 0.96135 1.00064 0.95131 1.19472 0.93423 0.95014 0.96411 1.21257 1.10411 1.18599 1.05216 0.91478 1.25028 0.95750 0.97227 0.95625 1.69927 1.17026 1.37711 1.30292 0.86783 0.76826 0.81976 0.83759 1.20183 1.21839 1.18846 0.89007 0.90341 0.91254 0.83082 0.85162 0.85315 0.94810 0.89696 0.84374 0.93724 0.92038 0.92635 0.92900 0.92834 0.97503 0.95451 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.77 36.00 0.35 -1.26 16 2 C 0.16 2.34 6.78 -82.59 -0.56 1.78 16 3 N -0.49 -7.25 10.27 -9.47 -0.10 -7.35 16 4 C 0.10 1.16 11.18 -17.55 -0.20 0.97 16 5 C -0.19 -1.89 10.11 -39.44 -0.40 -2.29 16 6 C -0.07 -0.74 9.82 -39.28 -0.39 -1.13 16 7 C -0.13 -1.71 5.41 -104.48 -0.57 -2.28 16 8 C 0.10 1.25 5.01 -4.97 -0.02 1.22 16 9 N -0.67 -9.58 5.69 -107.99 -0.61 -10.19 16 10 C 0.08 1.21 2.59 -67.72 -0.18 1.04 16 11 H 0.07 1.10 7.80 -51.92 -0.40 0.70 16 12 C -0.18 -2.18 9.16 37.15 0.34 -1.84 16 13 C -0.09 -1.73 4.83 -26.73 -0.13 -1.86 16 14 C -0.01 -0.14 3.93 -27.88 -0.11 -0.25 16 15 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 16 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.78 13.96 55.43 0.77 -28.00 16 19 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 23 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 24 H 0.08 1.11 6.12 -51.93 -0.32 0.80 16 25 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 26 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 27 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.03 0.36 7.33 -51.93 -0.38 -0.02 16 30 H 0.08 1.08 6.33 -51.93 -0.33 0.75 16 31 H 0.34 4.58 8.47 -39.29 -0.33 4.24 16 32 H 0.04 0.47 7.45 -51.92 -0.39 0.08 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.66 8.13 -51.93 -0.42 0.23 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.01 0.16 7.20 -51.93 -0.37 -0.21 16 38 H 0.03 0.66 7.18 -51.93 -0.37 0.29 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -32.35 319.06 -8.37 -40.72 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.29 Total: 1.80 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -2.28 Total: -19.41 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.06 Total: -45.54 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.35 -8.37 -40.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.198 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds