Wall clock time and date at job start Thu Apr 9 2020 12:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31884 * 119.62216 * 2 1 4 4 C 1.31856 * 121.72562 * 180.02562 * 3 2 1 5 5 C 1.38223 * 120.76567 * 359.97275 * 4 3 2 6 6 C 1.38625 * 119.15978 * 0.30777 * 5 4 3 7 7 C 1.38182 * 119.61296 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.42334 * 0.02562 * 7 2 1 9 9 N 1.46901 * 109.47090 * 79.99462 * 8 7 2 10 10 C 1.46901 * 110.99897 * 180.02562 * 9 8 7 11 11 H 1.09008 * 109.46533 * 35.00697 * 10 9 8 12 12 C 1.52990 * 109.47579 * 275.00424 * 10 9 8 13 13 C 1.53002 * 109.46974 * 154.99895 * 10 9 8 14 14 C 1.52999 * 109.47379 * 295.00591 * 13 10 9 15 15 C 1.50700 * 109.46678 * 179.97438 * 14 13 10 16 16 H 1.07990 * 120.00263 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99649 * 179.97438 * 15 14 13 18 18 N 1.31506 * 119.99995 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99746 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46992 * 90.00136 * 19 17 15 21 21 H 1.48500 * 109.46832 * 209.99942 * 19 17 15 22 22 H 1.48492 * 109.47449 * 330.00017 * 19 17 15 23 23 H 1.09000 * 109.47421 * 89.99775 * 1 2 3 24 24 H 1.09000 * 109.47282 * 210.00178 * 1 2 3 25 25 H 1.09010 * 109.46974 * 330.00160 * 1 2 3 26 26 H 1.08005 * 119.61482 * 179.97438 * 4 3 2 27 27 H 1.08002 * 120.41617 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.79223 * 179.72202 * 6 5 4 29 29 H 1.09002 * 109.47243 * 200.00126 * 8 7 2 30 30 H 1.09006 * 109.46611 * 320.00040 * 8 7 2 31 31 H 1.00900 * 110.99728 * 56.05160 * 9 8 7 32 32 H 1.09007 * 109.47120 * 60.00228 * 12 10 9 33 33 H 1.09001 * 109.47787 * 179.97438 * 12 10 9 34 34 H 1.08999 * 109.47520 * 300.00006 * 12 10 9 35 35 H 1.09002 * 109.46896 * 55.00508 * 13 10 9 36 36 H 1.08996 * 109.46847 * 175.00263 * 13 10 9 37 37 H 1.09002 * 109.47040 * 299.99829 * 14 13 10 38 38 H 1.09001 * 109.46936 * 59.99971 * 14 13 10 39 39 H 0.97000 * 120.00244 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1949 -0.0005 5 6 4.2267 0.0339 -0.0005 6 6 3.5765 -1.1904 -0.0064 7 6 2.1898 -1.2013 0.0005 8 6 1.4371 -2.5069 0.0005 9 7 0.9846 -2.8113 -1.3635 10 6 0.2448 -4.0798 -1.4020 11 1 -0.3261 -4.1954 -0.4806 12 6 1.2308 -5.2414 -1.5403 13 6 -0.7108 -4.0768 -2.5969 14 6 -1.7734 -2.9942 -2.3976 15 6 -2.7141 -2.9910 -3.5750 16 1 -2.5688 -3.6913 -4.3841 17 6 -3.7609 -2.0946 -3.6185 18 7 -4.5821 -2.0921 -4.6456 19 14 -4.0133 -0.8848 -2.2178 20 1 -3.2591 0.3630 -2.4995 21 1 -5.4591 -0.5710 -2.0893 22 1 -3.5225 -1.4845 -0.9511 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5139 26 1 3.9754 2.1528 -0.0009 27 1 5.3057 0.0801 -0.0005 28 1 4.1366 -2.1138 -0.0111 29 1 2.0921 -3.3040 0.3525 30 1 0.5733 -2.4283 0.6608 31 1 1.7614 -2.8257 -2.0073 32 1 1.9114 -5.2435 -0.6888 33 1 0.6819 -6.1827 -1.5683 34 1 1.8016 -5.1257 -2.4616 35 1 -0.1507 -3.8725 -3.5095 36 1 -1.1944 -5.0502 -2.6777 37 1 -2.3335 -3.1985 -1.4851 38 1 -1.2896 -2.0208 -2.3168 39 1 -5.3188 -1.4618 -4.6761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:20 Heat of formation + Delta-G solvation = -4.945653 kcal Electronic energy + Delta-G solvation = -18031.479961 eV Core-core repulsion = 15358.274154 eV Total energy + Delta-G solvation = -2673.205807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.26868 -38.56796 -35.53393 -34.41738 -33.86400 -32.40489 -30.44209 -28.57164 -27.12428 -26.14687 -23.41334 -22.78808 -22.32830 -21.38272 -18.81076 -17.77283 -17.22029 -16.62677 -16.39775 -16.24665 -15.38153 -15.20363 -14.92912 -14.56095 -14.25389 -13.96977 -13.89858 -13.72156 -13.52773 -13.28915 -13.18345 -12.92257 -12.90174 -12.77566 -12.03501 -11.88862 -11.68877 -11.46500 -11.30596 -11.10621 -10.70182 -10.68185 -10.34642 -9.73034 -9.12752 -8.25136 -6.26512 0.19029 0.38998 1.37789 1.39150 1.51354 2.40062 2.81596 3.11940 3.41037 3.48432 3.82805 3.94255 4.04996 4.07025 4.14836 4.35732 4.45459 4.55226 4.58867 4.71385 4.75355 4.77767 4.79464 4.91794 4.95256 5.03833 5.07576 5.22807 5.26507 5.29616 5.38702 5.41378 5.64196 5.73244 5.80333 5.86174 6.24999 6.36845 6.59198 6.82796 7.11764 7.37822 8.92176 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.006575 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.344155 B = 4257.852652 C = 5321.691375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.129 3.871 3 N -0.523 5.523 4 C 0.085 3.915 5 C -0.176 4.176 6 C -0.068 4.068 7 C -0.141 4.141 8 C 0.108 3.892 9 N -0.686 5.686 10 C 0.092 3.908 11 H 0.075 0.925 12 C -0.170 4.170 13 C -0.085 4.085 14 C 0.002 3.998 15 C -0.527 4.527 16 H 0.027 0.973 17 C 0.002 3.998 18 N -0.957 5.957 19 Si 0.947 3.053 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.241 1.241 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.176 0.824 27 H 0.167 0.833 28 H 0.159 0.841 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.343 0.657 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.009 0.991 38 H 0.026 0.974 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.238 0.357 14.199 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.008 4.008 3 N -0.233 5.233 4 C -0.072 4.072 5 C -0.195 4.195 6 C -0.094 4.094 7 C -0.143 4.143 8 C -0.021 4.021 9 N -0.318 5.318 10 C -0.017 4.017 11 H 0.093 0.907 12 C -0.229 4.229 13 C -0.123 4.123 14 C -0.035 4.035 15 C -0.566 4.566 16 H 0.045 0.955 17 C -0.194 4.194 18 N -0.599 5.599 19 Si 0.770 3.230 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.164 1.164 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.193 0.807 27 H 0.184 0.816 28 H 0.177 0.823 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.161 0.839 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.045 0.955 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.036 1.584 14.193 23.797 hybrid contribution 0.382 -0.715 -0.148 0.824 sum 19.418 0.868 14.045 23.980 Atomic orbital electron populations 1.20694 0.89534 1.03042 1.02633 1.21207 0.96940 0.88458 0.94198 1.67511 1.11698 1.30055 1.14086 1.23239 0.88876 1.00309 0.94739 1.22431 1.02866 0.92585 1.01651 1.21858 0.92995 0.99914 0.94631 1.20737 0.94984 0.95837 1.02734 1.20807 0.98090 0.92108 0.91087 1.60428 1.29877 1.34424 1.07046 1.21533 0.94348 0.87432 0.98415 0.90704 1.22391 0.99534 0.98891 1.02113 1.21345 0.95883 0.98009 0.97105 1.19365 0.93538 0.96660 0.93954 1.21683 1.11551 1.17447 1.05875 0.95504 1.25991 0.95452 0.99440 0.98478 1.70082 1.17994 1.39095 1.32738 0.85705 0.76923 0.79335 0.80997 1.19583 1.21395 1.16435 0.91876 0.89852 0.91317 0.80735 0.81573 0.82294 0.92212 0.90393 0.83864 0.91300 0.91918 0.92426 0.94024 0.93370 0.97297 0.95523 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.08 9.77 71.23 0.70 -2.39 16 2 C 0.13 3.69 6.78 42.54 0.29 3.98 16 3 N -0.52 -15.02 10.27 -183.89 -1.89 -16.91 16 4 C 0.09 1.80 11.18 84.69 0.95 2.74 16 5 C -0.18 -2.86 10.11 22.36 0.23 -2.64 16 6 C -0.07 -1.19 9.82 22.47 0.22 -0.97 16 7 C -0.14 -3.26 5.41 -19.77 -0.11 -3.37 16 8 C 0.11 2.35 5.01 85.56 0.43 2.78 16 9 N -0.69 -18.32 5.69 -495.56 -2.82 -21.14 16 10 C 0.09 2.57 2.59 44.91 0.12 2.68 16 11 H 0.07 2.08 7.80 -2.38 -0.02 2.06 16 12 C -0.17 -3.59 9.16 71.98 0.66 -2.93 16 13 C -0.09 -3.28 4.83 30.59 0.15 -3.13 16 14 C 0.00 0.11 3.93 29.85 0.12 0.22 16 15 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 16 H 0.03 1.76 7.99 -2.92 -0.02 1.74 16 17 C 0.00 0.13 5.47 84.66 0.46 0.59 16 18 N -0.96 -62.43 13.96 21.45 0.30 -62.13 16 19 Si 0.95 46.51 27.47 68.60 1.88 48.39 16 20 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.24 -10.86 6.54 99.48 0.65 -10.21 16 23 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.08 2.33 6.12 -2.39 -0.01 2.32 16 25 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 27 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 28 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 29 H 0.06 1.01 7.33 -2.39 -0.02 0.99 16 30 H 0.08 1.81 6.33 -2.38 -0.02 1.79 16 31 H 0.34 8.51 8.47 -89.69 -0.76 7.76 16 32 H 0.07 1.15 7.45 -2.38 -0.02 1.13 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.01 0.41 7.20 -2.39 -0.02 0.40 16 38 H 0.03 1.28 7.18 -2.39 -0.02 1.26 16 39 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -72.66 319.06 2.13 -70.53 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.21 Total: 15.00 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 4.45 Total: -33.73 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.41 Total: -100.19 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.39 kcal Total: -72.66 2.13 -70.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.580 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds