Wall clock time and date at job start Thu Apr 9 2020 12:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38672 * 120.41668 * 2 1 4 4 C 1.38631 * 118.42005 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.16040 * 0.02562 * 4 3 2 6 6 N 1.31858 * 120.76172 * 359.72093 * 5 4 3 7 7 C 1.31878 * 121.72470 * 0.56879 * 6 5 4 8 8 C 1.50706 * 119.61605 * 179.71067 * 7 6 5 9 9 H 1.08995 * 109.46920 * 164.72479 * 8 7 6 10 10 C 1.52999 * 109.47011 * 284.72780 * 8 7 6 11 11 N 1.46902 * 109.46835 * 44.72488 * 8 7 6 12 12 C 1.46906 * 110.99573 * 155.00105 * 11 8 7 13 13 C 1.52998 * 109.47020 * 179.97438 * 12 11 8 14 14 C 1.52996 * 109.47077 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47047 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00136 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00112 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47248 * 119.99830 * 19 17 15 22 22 H 1.48497 * 109.47294 * 240.00183 * 19 17 15 23 23 H 1.09002 * 109.47521 * 270.02644 * 1 2 3 24 24 H 1.09000 * 109.47219 * 30.02593 * 1 2 3 25 25 H 1.08998 * 109.46977 * 150.02165 * 1 2 3 26 26 H 1.07998 * 120.79089 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.41782 * 180.02562 * 4 3 2 28 28 H 1.08002 * 119.61585 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.46954 * 59.99821 * 10 8 7 30 30 H 1.09000 * 109.47023 * 180.02562 * 10 8 7 31 31 H 1.09004 * 109.46766 * 299.99927 * 10 8 7 32 32 H 1.00896 * 111.00219 * 278.95745 * 11 8 7 33 33 H 1.09002 * 109.46991 * 299.99841 * 12 11 8 34 34 H 1.09000 * 109.47202 * 60.00133 * 12 11 8 35 35 H 1.08995 * 109.47213 * 300.00679 * 13 12 11 36 36 H 1.09008 * 109.47264 * 60.00068 * 13 12 11 37 37 H 1.08993 * 109.47277 * 299.99937 * 14 13 12 38 38 H 1.09000 * 109.47041 * 60.00238 * 14 13 12 39 39 H 0.96998 * 120.00461 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1476 0.0005 5 6 4.2256 -0.0823 0.0005 6 7 3.5254 -1.1996 0.0055 7 6 2.2067 -1.1916 -0.0004 8 6 1.4540 -2.4972 -0.0009 9 1 0.4125 -2.3162 0.2647 10 6 1.5233 -3.1253 -1.3944 11 7 2.0575 -3.4107 0.9785 12 6 1.0796 -4.4023 1.4458 13 6 1.7436 -5.3340 2.4615 14 6 0.7249 -6.3664 2.9487 15 6 1.3788 -7.2837 3.9497 16 1 2.4170 -7.1441 4.2124 17 6 0.6517 -8.3013 4.5301 18 7 -0.6123 -8.4717 4.2098 19 14 1.4624 -9.4388 5.7703 20 1 2.8809 -9.0397 5.9546 21 1 0.7484 -9.3447 7.0690 22 1 1.4027 -10.8367 5.2728 23 1 -0.3634 0.0005 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6889 2.1423 -0.0004 27 1 4.1735 2.0593 0.0010 28 1 5.3046 -0.1285 0.0014 29 1 2.5648 -3.3062 -1.6599 30 1 0.9785 -4.0693 -1.3948 31 1 1.0754 -2.4474 -2.1211 32 1 2.8753 -3.8615 0.5964 33 1 0.2398 -3.8907 1.9162 34 1 0.7208 -4.9861 0.5982 35 1 2.5832 -5.8454 1.9908 36 1 2.1028 -4.7505 3.3093 37 1 -0.1143 -5.8546 3.4196 38 1 0.3654 -6.9500 2.1012 39 1 -1.1240 -9.1873 4.6183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198640652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:46 Heat of formation + Delta-G solvation = 11.488894 kcal Electronic energy + Delta-G solvation = -17383.274071 eV Core-core repulsion = 14710.780920 eV Total energy + Delta-G solvation = -2672.493151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48640 -36.96840 -34.14303 -33.63765 -32.38431 -30.90515 -28.95199 -27.37513 -25.86430 -24.37877 -22.63292 -21.95603 -20.83153 -19.99840 -17.01618 -16.40194 -16.20516 -15.31992 -14.97975 -14.67445 -14.39853 -14.24768 -13.82983 -13.25601 -13.12086 -13.02126 -12.71931 -12.52784 -12.23645 -12.11886 -11.88213 -11.50257 -11.31700 -10.89869 -10.82766 -10.52323 -10.44180 -9.79114 -9.64441 -9.43690 -9.26432 -9.00298 -8.81427 -8.30213 -8.03469 -5.95391 -3.96936 1.04230 1.23612 3.34578 3.41769 3.46916 3.70927 4.27245 4.36873 4.51414 4.69032 4.71200 4.87909 4.94211 5.19914 5.21936 5.26949 5.40546 5.41796 5.48108 5.52008 5.72285 5.76030 5.85279 5.91318 5.98672 6.04628 6.10731 6.21737 6.39345 6.65848 6.79662 6.84510 7.20637 7.41535 7.73730 7.76703 7.89867 8.04968 8.05724 8.49606 9.10611 9.66884 11.16151 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.037764 B = 0.003616 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.260079 B = 7741.172207 C = 7984.887381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.136 4.136 3 C -0.079 4.079 4 C -0.180 4.180 5 C 0.093 3.907 6 N -0.463 5.463 7 C 0.153 3.847 8 C 0.127 3.873 9 H 0.095 0.905 10 C -0.176 4.176 11 N -0.676 5.676 12 C 0.059 3.941 13 C -0.106 4.106 14 C 0.022 3.978 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.152 0.848 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.346 0.654 33 H 0.065 0.935 34 H 0.025 0.975 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 19.431 -11.900 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.138 4.138 3 C -0.105 4.105 4 C -0.200 4.200 5 C -0.064 4.064 6 N -0.171 5.171 7 C 0.014 3.986 8 C 0.016 3.984 9 H 0.112 0.888 10 C -0.235 4.235 11 N -0.307 5.307 12 C -0.070 4.070 13 C -0.144 4.144 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.169 0.831 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.165 0.835 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.246 18.927 -11.313 22.455 hybrid contribution -0.054 -0.310 -0.043 0.317 sum 4.192 18.617 -11.355 22.206 Atomic orbital electron populations 1.20810 0.90413 1.02945 1.02968 1.20705 0.97517 0.93598 1.01971 1.21406 0.94191 0.97823 0.97084 1.22080 0.95248 0.99562 1.03149 1.22745 1.00247 0.87731 0.95724 1.67440 1.07752 1.31071 1.10792 1.21113 0.89693 0.94146 0.93626 1.20494 0.97175 0.89275 0.91453 0.88757 1.22451 1.02850 1.01206 0.97042 1.60503 1.09095 1.21941 1.39142 1.22181 0.94731 0.92469 0.97594 1.21610 0.99379 0.96522 0.96929 1.19069 0.93866 0.92730 0.95903 1.21313 0.97240 1.13312 1.23627 0.92615 1.25030 0.94876 0.97683 0.96993 1.69975 1.07748 1.32257 1.43721 0.86545 0.79646 0.80651 0.81229 1.19714 1.21045 1.21079 0.90570 0.91458 0.90885 0.85173 0.85181 0.83052 0.91768 0.91667 0.92487 0.83462 0.91634 0.95668 0.93600 0.92625 0.96614 0.96797 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.25 36.01 0.33 -0.67 16 2 C -0.14 -1.52 5.90 -104.48 -0.62 -2.13 16 3 C -0.08 -0.76 9.86 -39.28 -0.39 -1.15 16 4 C -0.18 -1.70 10.11 -39.44 -0.40 -2.10 16 5 C 0.09 1.04 11.18 -17.54 -0.20 0.84 16 6 N -0.46 -6.43 10.06 -9.47 -0.10 -6.52 16 7 C 0.15 2.04 5.73 -82.59 -0.47 1.56 16 8 C 0.13 1.69 2.46 -68.86 -0.17 1.52 16 9 H 0.09 1.19 5.57 -51.93 -0.29 0.90 16 10 C -0.18 -2.08 9.14 37.16 0.34 -1.74 16 11 N -0.68 -10.77 6.06 -107.95 -0.65 -11.43 16 12 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 13 C -0.11 -2.29 5.41 -26.73 -0.14 -2.44 16 14 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 15 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 19 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 25 H 0.07 0.62 6.40 -51.93 -0.33 0.29 16 26 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 27 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.35 5.52 8.47 -39.29 -0.33 5.18 16 33 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 34 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -32.14 323.03 -8.78 -40.93 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.33 Total: 0.45 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.28 Total: -18.69 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.01 Total: -44.65 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.14 -8.78 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198640652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.418 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds