Wall clock time and date at job start Thu Apr 9 2020 12:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38672 * 120.41668 * 2 1 4 4 C 1.38631 * 118.42005 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.16040 * 0.02562 * 4 3 2 6 6 N 1.31858 * 120.76172 * 359.72093 * 5 4 3 7 7 C 1.31878 * 121.72470 * 0.56879 * 6 5 4 8 8 C 1.50706 * 119.61605 * 179.71067 * 7 6 5 9 9 H 1.08995 * 109.46920 * 164.72479 * 8 7 6 10 10 C 1.52999 * 109.47011 * 284.72780 * 8 7 6 11 11 N 1.46902 * 109.46835 * 44.72488 * 8 7 6 12 12 C 1.46906 * 110.99573 * 155.00105 * 11 8 7 13 13 C 1.52998 * 109.47020 * 179.97438 * 12 11 8 14 14 C 1.52996 * 109.47077 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47047 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00136 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00112 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47248 * 119.99830 * 19 17 15 22 22 H 1.48497 * 109.47294 * 240.00183 * 19 17 15 23 23 H 1.09002 * 109.47521 * 270.02644 * 1 2 3 24 24 H 1.09000 * 109.47219 * 30.02593 * 1 2 3 25 25 H 1.08998 * 109.46977 * 150.02165 * 1 2 3 26 26 H 1.07998 * 120.79089 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.41782 * 180.02562 * 4 3 2 28 28 H 1.08002 * 119.61585 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.46954 * 59.99821 * 10 8 7 30 30 H 1.09000 * 109.47023 * 180.02562 * 10 8 7 31 31 H 1.09004 * 109.46766 * 299.99927 * 10 8 7 32 32 H 1.00896 * 111.00219 * 278.95745 * 11 8 7 33 33 H 1.09002 * 109.46991 * 299.99841 * 12 11 8 34 34 H 1.09000 * 109.47202 * 60.00133 * 12 11 8 35 35 H 1.08995 * 109.47213 * 300.00679 * 13 12 11 36 36 H 1.09008 * 109.47264 * 60.00068 * 13 12 11 37 37 H 1.08993 * 109.47277 * 299.99937 * 14 13 12 38 38 H 1.09000 * 109.47041 * 60.00238 * 14 13 12 39 39 H 0.96998 * 120.00461 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1476 0.0005 5 6 4.2256 -0.0823 0.0005 6 7 3.5254 -1.1996 0.0055 7 6 2.2067 -1.1916 -0.0004 8 6 1.4540 -2.4972 -0.0009 9 1 0.4125 -2.3162 0.2647 10 6 1.5233 -3.1253 -1.3944 11 7 2.0575 -3.4107 0.9785 12 6 1.0796 -4.4023 1.4458 13 6 1.7436 -5.3340 2.4615 14 6 0.7249 -6.3664 2.9487 15 6 1.3788 -7.2837 3.9497 16 1 2.4170 -7.1441 4.2124 17 6 0.6517 -8.3013 4.5301 18 7 -0.6123 -8.4717 4.2098 19 14 1.4624 -9.4388 5.7703 20 1 2.8809 -9.0397 5.9546 21 1 0.7484 -9.3447 7.0690 22 1 1.4027 -10.8367 5.2728 23 1 -0.3634 0.0005 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6889 2.1423 -0.0004 27 1 4.1735 2.0593 0.0010 28 1 5.3046 -0.1285 0.0014 29 1 2.5648 -3.3062 -1.6599 30 1 0.9785 -4.0693 -1.3948 31 1 1.0754 -2.4474 -2.1211 32 1 2.8753 -3.8615 0.5964 33 1 0.2398 -3.8907 1.9162 34 1 0.7208 -4.9861 0.5982 35 1 2.5832 -5.8454 1.9908 36 1 2.1028 -4.7505 3.3093 37 1 -0.1143 -5.8546 3.4196 38 1 0.3654 -6.9500 2.1012 39 1 -1.1240 -9.1873 4.6183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198640652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:45 Heat of formation + Delta-G solvation = -8.776582 kcal Electronic energy + Delta-G solvation = -17384.152848 eV Core-core repulsion = 14710.780920 eV Total energy + Delta-G solvation = -2673.371928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32258 -38.20610 -35.88026 -34.57318 -33.98883 -32.21885 -30.28875 -28.12888 -27.65011 -25.41291 -24.23193 -22.90893 -22.09817 -21.51931 -18.52779 -17.78474 -17.31069 -16.56743 -16.47801 -15.99574 -15.63007 -15.40647 -14.82726 -14.53841 -14.41501 -13.92483 -13.81638 -13.66034 -13.43168 -13.33630 -13.18522 -12.97922 -12.70629 -12.60891 -12.46856 -12.21736 -11.80967 -11.55191 -11.38083 -11.11023 -10.56936 -10.55456 -10.24290 -9.66639 -9.27665 -8.20098 -6.30849 0.23007 0.45726 1.39913 1.40154 1.54050 2.41252 2.84917 3.12827 3.27859 3.44241 3.82535 3.99981 4.04246 4.18269 4.23893 4.25822 4.32919 4.44936 4.56589 4.63488 4.72434 4.74142 4.79294 4.86248 4.93621 5.03119 5.10619 5.13901 5.22592 5.23846 5.31317 5.42485 5.52591 5.75743 5.86145 5.88513 6.09982 6.28544 6.48176 6.85758 7.20647 7.38184 8.92004 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.037764 B = 0.003616 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.260079 B = 7741.172207 C = 7984.887381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.144 4.144 3 C -0.083 4.083 4 C -0.172 4.172 5 C 0.073 3.927 6 N -0.496 5.496 7 C 0.125 3.875 8 C 0.127 3.873 9 H 0.099 0.901 10 C -0.168 4.168 11 N -0.681 5.681 12 C 0.074 3.926 13 C -0.092 4.092 14 C 0.027 3.973 15 C -0.543 4.543 16 H 0.057 0.943 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.276 1.276 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.162 0.838 28 H 0.170 0.830 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.345 0.655 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.047 0.953 36 H 0.047 0.953 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 20.863 -11.998 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.146 4.146 3 C -0.108 4.108 4 C -0.192 4.192 5 C -0.084 4.084 6 N -0.204 5.204 7 C -0.014 4.014 8 C 0.017 3.983 9 H 0.117 0.883 10 C -0.227 4.227 11 N -0.312 5.312 12 C -0.055 4.055 13 C -0.130 4.130 14 C -0.011 4.011 15 C -0.581 4.581 16 H 0.075 0.925 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.790 3.210 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.178 0.822 27 H 0.180 0.820 28 H 0.187 0.813 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.164 0.836 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.011 0.989 38 H 0.012 0.988 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.895 20.375 -11.423 23.866 hybrid contribution -0.242 -0.668 -0.041 0.711 sum 4.653 19.707 -11.464 23.269 Atomic orbital electron populations 1.20852 0.89018 1.04057 1.03133 1.20987 0.98701 0.93502 1.01451 1.21830 0.94513 0.98492 0.95989 1.22450 0.95579 1.00064 1.01103 1.23172 1.01227 0.87978 0.96027 1.67358 1.08343 1.32788 1.11955 1.21113 0.89910 0.94562 0.95771 1.20548 0.97359 0.89103 0.91325 0.88293 1.22353 1.02403 1.01253 0.96701 1.60431 1.08660 1.21344 1.40751 1.21878 0.94643 0.92316 0.96694 1.21362 0.98174 0.95870 0.97591 1.18959 0.94215 0.93269 0.94653 1.21725 0.97562 1.14296 1.24566 0.92522 1.25980 0.95460 0.99364 0.99043 1.70095 1.09231 1.33076 1.44904 0.85390 0.78861 0.78312 0.78432 1.18811 1.20210 1.20186 0.90776 0.89192 0.90987 0.82167 0.81992 0.81338 0.92551 0.92041 0.90857 0.83632 0.91791 0.95325 0.93413 0.93424 0.98863 0.98825 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.25 71.24 0.66 -1.13 16 2 C -0.14 -2.99 5.90 -19.77 -0.12 -3.11 16 3 C -0.08 -1.37 9.86 22.47 0.22 -1.15 16 4 C -0.17 -2.80 10.11 22.36 0.23 -2.57 16 5 C 0.07 1.54 11.18 84.69 0.95 2.49 16 6 N -0.50 -13.56 10.06 -183.88 -1.85 -15.41 16 7 C 0.12 3.24 5.73 42.54 0.24 3.48 16 8 C 0.13 3.35 2.46 44.17 0.11 3.46 16 9 H 0.10 2.46 5.57 -2.39 -0.01 2.45 16 10 C -0.17 -3.90 9.14 71.98 0.66 -3.25 16 11 N -0.68 -21.82 6.06 -495.43 -3.00 -24.82 16 12 C 0.07 2.65 5.48 86.30 0.47 3.13 16 13 C -0.09 -4.04 5.41 30.59 0.17 -3.88 16 14 C 0.03 1.46 4.97 29.85 0.15 1.61 16 15 C -0.54 -32.14 9.11 25.60 0.23 -31.91 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 17 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 18 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 19 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 20 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.09 0.98 8.10 -2.39 -0.02 0.96 16 25 H 0.07 1.13 6.40 -2.39 -0.02 1.11 16 26 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 27 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 29 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.06 1.45 7.45 -2.39 -0.02 1.43 16 31 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.34 11.12 8.47 -89.70 -0.76 10.36 16 33 H 0.06 2.32 8.06 -2.39 -0.02 2.30 16 34 H 0.03 1.01 7.44 -2.39 -0.02 0.99 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -69.49 323.03 2.15 -67.34 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.26 Total: 15.36 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 4.43 Total: -32.41 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -4.57 Total: -97.70 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.49 2.15 -67.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198640652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.564 kcal (2) G-P(sol) polarization free energy of solvation -69.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds