Wall clock time and date at job start Thu Apr 9 2020 12:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47360 * 2 1 4 4 C 1.53008 * 109.46927 * 239.99927 * 2 1 3 5 5 C 1.50696 * 109.47296 * 174.99811 * 4 2 1 6 6 H 1.07998 * 119.99689 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00283 * 179.97438 * 5 4 2 8 8 N 1.31505 * 120.00256 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99554 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47102 * 90.00115 * 9 7 5 11 11 H 1.48502 * 109.46895 * 209.99925 * 9 7 5 12 12 H 1.48500 * 109.47348 * 329.99940 * 9 7 5 13 13 N 1.46899 * 109.47385 * 120.00198 * 2 1 3 14 14 C 1.46896 * 111.00148 * 58.94784 * 13 2 1 15 15 C 1.46905 * 110.99873 * 294.99513 * 13 2 1 16 16 C 1.52999 * 109.46937 * 190.00124 * 15 13 2 17 17 C 1.50707 * 109.46798 * 180.02562 * 16 15 13 18 18 C 1.38227 * 119.62024 * 124.97813 * 17 16 15 19 19 C 1.38627 * 119.15702 * 179.78495 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61172 * 304.99564 * 17 16 15 23 23 H 1.09003 * 109.46734 * 300.00024 * 1 2 3 24 24 H 1.08995 * 109.47108 * 59.99845 * 1 2 3 25 25 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46687 * 295.00178 * 4 2 1 27 27 H 1.08998 * 109.46797 * 54.99866 * 4 2 1 28 28 H 0.97003 * 120.00104 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.47563 * 296.04925 * 14 13 2 30 30 H 1.09007 * 109.47300 * 56.05382 * 14 13 2 31 31 H 1.09003 * 109.47080 * 176.04348 * 14 13 2 32 32 H 1.08996 * 109.46637 * 70.00128 * 15 13 2 33 33 H 1.08994 * 109.46816 * 309.99933 * 15 13 2 34 34 H 1.08996 * 109.47454 * 60.00504 * 16 15 13 35 35 H 1.09007 * 109.47108 * 299.99872 * 16 15 13 36 36 H 1.07998 * 120.41916 * 359.97438 * 18 17 16 37 37 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 38 38 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 39 39 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3129 6 1 4.0789 -0.0862 -0.5394 7 6 4.2304 -1.1936 -2.3580 8 7 5.5410 -1.1013 -2.4132 9 14 3.3013 -2.1088 -3.6954 10 1 2.9406 -1.1639 -4.7827 11 1 4.1597 -3.1896 -4.2434 12 1 2.0652 -2.7004 -3.1234 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0761 1.2460 15 6 1.6489 0.0392 2.4181 16 6 2.3791 -0.5662 3.6185 17 6 1.9982 0.1840 4.8688 18 6 1.4850 -0.5068 5.9505 19 6 1.1420 0.1923 7.0973 20 6 1.3193 1.5676 7.1098 21 6 1.8382 2.1898 5.9904 22 7 2.1579 1.4920 4.9180 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.7516 -1.7715 -1.2056 27 1 1.6053 -0.2618 -2.1370 28 1 6.0254 -1.5087 -3.1482 29 1 0.4420 -2.0731 1.3348 30 1 1.8167 -2.5951 0.3318 31 1 1.9618 -2.5868 2.1058 32 1 0.5724 -0.0345 2.5726 33 1 1.9300 1.0870 2.3124 34 1 3.4556 -0.4925 3.4640 35 1 2.0980 -1.6141 3.7241 36 1 1.3559 -1.5780 5.9038 37 1 0.7423 -0.3214 7.9592 38 1 1.0594 2.1446 7.9851 39 1 1.9832 3.2600 5.9936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276525958.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:10 Heat of formation + Delta-G solvation = 35.857059 kcal Electronic energy + Delta-G solvation = -17832.320775 eV Core-core repulsion = 15160.884307 eV Total energy + Delta-G solvation = -2671.436468 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26130 -38.00060 -33.96420 -32.56122 -32.30739 -30.82260 -28.36469 -27.87422 -25.79538 -23.72020 -23.39679 -22.21666 -20.64645 -18.69603 -16.97204 -16.52705 -16.29188 -15.84679 -15.10195 -14.80707 -14.26987 -14.15124 -13.54318 -13.42630 -13.08039 -12.95210 -12.54102 -12.18976 -12.13596 -11.76366 -11.55030 -11.48587 -11.23967 -10.79888 -10.59834 -10.51077 -10.17380 -9.95944 -9.59467 -9.49542 -9.37308 -9.01346 -8.95304 -8.38474 -7.46258 -5.86586 -3.80524 1.02976 1.19229 3.38075 3.45819 3.48045 3.72791 4.24423 4.47173 4.57677 4.71075 4.87460 4.95923 5.03859 5.36183 5.46660 5.48719 5.55614 5.62953 5.71294 5.82106 5.84097 5.90073 5.98396 6.02124 6.05454 6.13000 6.33674 6.40842 6.47849 6.55337 6.62478 6.70217 6.84908 7.16102 7.40906 7.85929 7.88354 7.98471 8.01694 8.77256 9.27461 9.76382 11.27512 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.038148 B = 0.004432 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.801018 B = 6316.660475 C = 6495.548452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.076 0.924 4 C -0.009 4.009 5 C -0.490 4.490 6 H 0.080 0.920 7 C 0.061 3.939 8 N -0.908 5.908 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.513 5.513 14 C 0.021 3.979 15 C 0.067 3.933 16 C -0.070 4.070 17 C 0.143 3.857 18 C -0.174 4.174 19 C -0.076 4.076 20 C -0.188 4.188 21 C 0.102 3.898 22 N -0.478 5.478 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.018 0.982 27 H 0.013 0.987 28 H 0.259 0.741 29 H 0.014 0.986 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.021 0.979 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 1.740 17.598 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.012 4.012 3 H 0.094 0.906 4 C -0.046 4.046 5 C -0.529 4.529 6 H 0.098 0.902 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.236 5.236 14 C -0.127 4.127 15 C -0.062 4.062 16 C -0.108 4.108 17 C 0.005 3.995 18 C -0.194 4.194 19 C -0.102 4.102 20 C -0.208 4.208 21 C -0.055 4.055 22 N -0.187 5.187 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.244 2.097 16.725 19.724 hybrid contribution -1.674 -0.929 0.131 1.919 sum -11.917 1.168 16.856 20.676 Atomic orbital electron populations 1.22559 0.99864 1.01243 1.00943 1.21684 0.89760 0.98647 0.91074 0.90601 1.19732 0.97996 0.95363 0.91546 1.21083 0.89407 1.33730 1.08642 0.90194 1.25011 0.94656 0.96334 0.97792 1.69913 1.06416 1.46217 1.32283 0.86912 0.80175 0.80056 0.82832 1.20614 1.21651 1.19366 1.62045 1.59051 1.01580 1.00882 1.22447 0.96177 0.91137 1.02906 1.21956 0.95837 0.99015 0.89398 1.20630 1.02866 0.97634 0.89672 1.21460 0.92747 0.89913 0.95364 1.22028 1.01659 1.01455 0.94282 1.21558 0.96423 0.94360 0.97813 1.22099 1.02766 0.95565 1.00356 1.22801 0.93926 1.00273 0.88502 1.67563 1.15866 1.07999 1.27278 0.93795 0.92570 0.92968 0.96351 0.96893 0.93109 0.96761 0.90233 0.92447 0.96065 0.90147 0.88628 0.90454 0.84888 0.85113 0.85114 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 8.50 37.16 0.32 -2.84 16 2 C 0.10 1.96 2.29 -67.71 -0.16 1.80 16 3 H 0.08 1.61 8.03 -51.93 -0.42 1.20 16 4 C -0.01 -0.22 3.34 -27.88 -0.09 -0.31 16 5 C -0.49 -14.07 9.39 -34.44 -0.32 -14.40 16 6 H 0.08 2.52 7.99 -52.49 -0.42 2.10 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.91 -28.60 13.96 55.43 0.77 -27.82 16 9 Si 0.87 22.04 27.47 -169.99 -4.67 17.37 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 13 N -0.51 -9.86 4.47 -234.89 -1.05 -10.90 16 14 C 0.02 0.37 8.52 60.06 0.51 0.88 16 15 C 0.07 1.09 4.25 -3.82 -0.02 1.07 16 16 C -0.07 -1.00 5.54 -27.88 -0.15 -1.16 16 17 C 0.14 1.92 6.18 -82.58 -0.51 1.41 16 18 C -0.17 -1.89 9.71 -39.44 -0.38 -2.27 16 19 C -0.08 -0.69 10.18 -39.28 -0.40 -1.09 16 20 C -0.19 -1.71 10.11 -39.44 -0.40 -2.11 16 21 C 0.10 1.13 11.18 -17.55 -0.20 0.94 16 22 N -0.48 -6.79 9.88 -9.47 -0.09 -6.88 16 23 H 0.04 0.68 6.75 -51.93 -0.35 0.33 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.85 6.47 -51.93 -0.34 0.52 16 26 H 0.02 0.44 5.15 -51.93 -0.27 0.17 16 27 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.01 0.22 6.51 -51.93 -0.34 -0.12 16 30 H 0.08 1.55 6.03 -51.93 -0.31 1.24 16 31 H 0.06 0.87 6.47 -51.93 -0.34 0.54 16 32 H 0.02 0.33 6.94 -51.93 -0.36 -0.03 16 33 H 0.08 1.42 7.80 -51.93 -0.41 1.01 16 34 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.08 0.98 6.28 -51.92 -0.33 0.65 16 36 H 0.13 1.17 7.95 -52.49 -0.42 0.75 16 37 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -32.44 309.90 -8.23 -40.66 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.96 Total: -0.75 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.90 Total: -16.35 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.37 Total: -45.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.44 -8.23 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276525958.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.522 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds