Wall clock time and date at job start Thu Apr 9 2020 12:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47360 * 2 1 4 4 C 1.53008 * 109.46927 * 239.99927 * 2 1 3 5 5 C 1.50696 * 109.47296 * 174.99811 * 4 2 1 6 6 H 1.07998 * 119.99689 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00283 * 179.97438 * 5 4 2 8 8 N 1.31505 * 120.00256 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99554 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47102 * 90.00115 * 9 7 5 11 11 H 1.48502 * 109.46895 * 209.99925 * 9 7 5 12 12 H 1.48500 * 109.47348 * 329.99940 * 9 7 5 13 13 N 1.46899 * 109.47385 * 120.00198 * 2 1 3 14 14 C 1.46896 * 111.00148 * 58.94784 * 13 2 1 15 15 C 1.46905 * 110.99873 * 294.99513 * 13 2 1 16 16 C 1.52999 * 109.46937 * 190.00124 * 15 13 2 17 17 C 1.50707 * 109.46798 * 180.02562 * 16 15 13 18 18 C 1.38227 * 119.62024 * 124.97813 * 17 16 15 19 19 C 1.38627 * 119.15702 * 179.78495 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61172 * 304.99564 * 17 16 15 23 23 H 1.09003 * 109.46734 * 300.00024 * 1 2 3 24 24 H 1.08995 * 109.47108 * 59.99845 * 1 2 3 25 25 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46687 * 295.00178 * 4 2 1 27 27 H 1.08998 * 109.46797 * 54.99866 * 4 2 1 28 28 H 0.97003 * 120.00104 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.47563 * 296.04925 * 14 13 2 30 30 H 1.09007 * 109.47300 * 56.05382 * 14 13 2 31 31 H 1.09003 * 109.47080 * 176.04348 * 14 13 2 32 32 H 1.08996 * 109.46637 * 70.00128 * 15 13 2 33 33 H 1.08994 * 109.46816 * 309.99933 * 15 13 2 34 34 H 1.08996 * 109.47454 * 60.00504 * 16 15 13 35 35 H 1.09007 * 109.47108 * 299.99872 * 16 15 13 36 36 H 1.07998 * 120.41916 * 359.97438 * 18 17 16 37 37 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 38 38 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 39 39 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3129 6 1 4.0789 -0.0862 -0.5394 7 6 4.2304 -1.1936 -2.3580 8 7 5.5410 -1.1013 -2.4132 9 14 3.3013 -2.1088 -3.6954 10 1 2.9406 -1.1639 -4.7827 11 1 4.1597 -3.1896 -4.2434 12 1 2.0652 -2.7004 -3.1234 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0761 1.2460 15 6 1.6489 0.0392 2.4181 16 6 2.3791 -0.5662 3.6185 17 6 1.9982 0.1840 4.8688 18 6 1.4850 -0.5068 5.9505 19 6 1.1420 0.1923 7.0973 20 6 1.3193 1.5676 7.1098 21 6 1.8382 2.1898 5.9904 22 7 2.1579 1.4920 4.9180 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.7516 -1.7715 -1.2056 27 1 1.6053 -0.2618 -2.1370 28 1 6.0254 -1.5087 -3.1482 29 1 0.4420 -2.0731 1.3348 30 1 1.8167 -2.5951 0.3318 31 1 1.9618 -2.5868 2.1058 32 1 0.5724 -0.0345 2.5726 33 1 1.9300 1.0870 2.3124 34 1 3.4556 -0.4925 3.4640 35 1 2.0980 -1.6141 3.7241 36 1 1.3559 -1.5780 5.9038 37 1 0.7423 -0.3214 7.9592 38 1 1.0594 2.1446 7.9851 39 1 1.9832 3.2600 5.9936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276525958.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:08 Heat of formation + Delta-G solvation = 14.323936 kcal Electronic energy + Delta-G solvation = -17833.254522 eV Core-core repulsion = 15160.884307 eV Total energy + Delta-G solvation = -2672.370215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.12021 -39.47140 -35.40769 -34.30611 -33.25088 -32.28283 -29.70431 -29.52900 -27.09660 -25.13707 -24.39025 -23.64810 -21.89337 -20.30447 -18.76636 -17.84972 -17.19544 -16.97318 -16.45256 -16.10703 -15.86656 -15.50822 -14.84072 -14.57849 -14.40316 -14.16637 -13.96020 -13.95794 -13.43110 -13.14498 -12.94093 -12.81916 -12.57340 -12.36795 -12.24764 -12.02285 -11.69827 -11.57852 -11.33581 -11.05906 -10.77001 -10.66026 -10.26517 -9.85001 -8.89058 -8.15616 -6.15109 0.21367 0.42426 1.38470 1.40097 1.51307 2.43592 2.87085 3.08902 3.23091 3.48956 3.88070 4.05167 4.14130 4.17041 4.26533 4.29480 4.31868 4.44923 4.53902 4.55700 4.63986 4.72380 4.79294 4.86929 4.94378 5.03711 5.11092 5.12525 5.14754 5.27360 5.29778 5.31304 5.33448 5.58364 5.76753 5.85640 6.37336 6.45677 6.55362 6.93411 7.14490 7.45467 9.02177 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.038148 B = 0.004432 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.801018 B = 6316.660475 C = 6495.548452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 H 0.053 0.947 4 C -0.005 4.005 5 C -0.492 4.492 6 H 0.031 0.969 7 C -0.003 4.003 8 N -0.959 5.959 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.246 1.246 13 N -0.543 5.543 14 C 0.025 3.975 15 C 0.079 3.921 16 C -0.062 4.062 17 C 0.115 3.885 18 C -0.175 4.175 19 C -0.075 4.075 20 C -0.177 4.177 21 C 0.082 3.918 22 N -0.520 5.520 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.019 0.981 28 H 0.261 0.739 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.216 0.736 19.049 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.011 4.011 3 H 0.071 0.929 4 C -0.042 4.042 5 C -0.531 4.531 6 H 0.050 0.950 7 C -0.198 4.198 8 N -0.602 5.602 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.170 1.170 13 N -0.267 5.267 14 C -0.123 4.123 15 C -0.049 4.049 16 C -0.100 4.100 17 C -0.023 4.023 18 C -0.195 4.195 19 C -0.100 4.100 20 C -0.196 4.196 21 C -0.075 4.075 22 N -0.230 5.230 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.223 1.099 18.193 22.518 hybrid contribution -0.688 -0.518 -0.174 0.879 sum -13.911 0.581 18.020 22.772 Atomic orbital electron populations 1.22394 0.96508 1.02246 1.02162 1.21483 0.92349 0.96950 0.90312 0.92913 1.19666 0.94566 0.96280 0.93707 1.21294 0.92036 1.32566 1.07160 0.95038 1.25967 0.95504 0.97567 1.00749 1.70093 1.08565 1.47957 1.33578 0.85724 0.79310 0.78627 0.79294 1.19585 1.21484 1.16993 1.61952 1.60459 1.02792 1.01481 1.22417 0.97662 0.89759 1.02455 1.21819 0.96656 0.97525 0.88934 1.20490 1.00832 0.98824 0.89824 1.21329 0.95075 0.90042 0.95822 1.22253 1.00776 1.02510 0.93950 1.22017 0.95335 0.94498 0.98175 1.22492 1.00658 0.96009 1.00462 1.23212 0.94405 1.01182 0.88661 1.67456 1.17331 1.08877 1.29337 0.92329 0.91666 0.91936 0.95605 0.96306 0.93036 0.94470 0.92662 0.90653 0.94768 0.92505 0.91516 0.88642 0.82926 0.81595 0.81730 0.81285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.50 8.50 71.98 0.61 -4.89 16 2 C 0.10 3.98 2.29 44.92 0.10 4.08 16 3 H 0.05 2.35 8.03 -2.39 -0.02 2.33 16 4 C 0.00 -0.23 3.34 29.85 0.10 -0.13 16 5 C -0.49 -29.25 9.39 25.60 0.24 -29.01 16 6 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 7 C 0.00 -0.19 5.47 84.66 0.46 0.27 16 8 N -0.96 -62.59 13.96 21.45 0.30 -62.29 16 9 Si 0.95 45.56 27.47 68.60 1.88 47.44 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 13 N -0.54 -21.15 4.47 -897.04 -4.01 -25.15 16 14 C 0.02 0.83 8.52 127.69 1.09 1.92 16 15 C 0.08 2.61 4.25 86.30 0.37 2.98 16 16 C -0.06 -1.80 5.54 29.85 0.17 -1.63 16 17 C 0.11 3.04 6.18 42.55 0.26 3.31 16 18 C -0.18 -3.42 9.71 22.36 0.22 -3.20 16 19 C -0.07 -1.11 10.18 22.47 0.23 -0.88 16 20 C -0.18 -2.70 10.11 22.36 0.23 -2.47 16 21 C 0.08 1.74 11.18 84.67 0.95 2.69 16 22 N -0.52 -14.94 9.88 -183.88 -1.82 -16.76 16 23 H 0.06 1.68 6.75 -2.39 -0.02 1.66 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 1.85 6.47 -2.39 -0.02 1.83 16 26 H 0.03 1.21 5.15 -2.39 -0.01 1.19 16 27 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 28 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.04 1.06 6.51 -2.39 -0.02 1.05 16 30 H 0.05 2.10 6.03 -2.38 -0.01 2.09 16 31 H 0.07 2.20 6.47 -2.39 -0.02 2.18 16 32 H 0.03 1.04 6.94 -2.39 -0.02 1.02 16 33 H 0.06 2.12 7.80 -2.39 -0.02 2.10 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.10 2.34 6.28 -2.38 -0.01 2.32 16 36 H 0.15 2.25 7.95 -2.91 -0.02 2.22 16 37 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -73.63 309.90 2.34 -71.28 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.96 Total: 12.45 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 5.02 Total: -26.97 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -5.52 Total: -104.20 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -73.63 2.34 -71.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276525958.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.608 kcal (2) G-P(sol) polarization free energy of solvation -73.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds