Wall clock time and date at job start Thu Apr 9 2020 12:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47112 * 53.36014 * 3 2 1 5 5 C 1.36886 * 120.00175 * 262.01993 * 4 3 2 6 6 H 1.07997 * 120.00248 * 199.50300 * 5 4 3 7 7 C 1.39002 * 119.99874 * 19.50500 * 5 4 3 8 8 N 1.31397 * 119.99781 * 18.50655 * 7 5 4 9 9 Si 1.86804 * 120.00226 * 198.50403 * 7 5 4 10 10 H 1.48494 * 109.46860 * 59.99685 * 9 7 5 11 11 H 1.48495 * 109.46971 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46938 * 300.00105 * 9 7 5 13 13 C 1.34787 * 120.00101 * 82.02029 * 4 3 2 14 14 O 1.21741 * 119.99940 * 181.65572 * 13 4 3 15 15 C 1.46453 * 119.99421 * 1.65672 * 13 4 3 16 16 C 1.36771 * 125.45727 * 172.45123 * 15 13 4 17 17 C 1.37446 * 113.28018 * 180.26373 * 16 15 13 18 18 C 1.33850 * 115.10312 * 359.97438 * 17 16 15 19 19 C 1.50704 * 124.51218 * 179.97438 * 18 17 16 20 20 S 1.70608 * 110.97212 * 0.02562 * 18 17 16 21 21 H 4.40642 * 5.51364 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.47621 * 293.35814 * 3 2 1 23 23 H 1.09000 * 109.46873 * 173.35844 * 3 2 1 24 24 H 0.97008 * 119.99577 * 180.02562 * 8 7 5 25 25 H 1.07999 * 123.35935 * 0.23688 * 16 15 13 26 26 H 1.07991 * 122.44793 * 179.97438 * 17 16 15 27 27 H 1.08998 * 109.47054 * 180.02562 * 19 18 17 28 28 H 1.08998 * 109.46973 * 299.99563 * 19 18 17 29 29 H 1.09000 * 109.47527 * 59.99727 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8234 -1.1083 5 6 3.5186 -2.1176 -0.8815 6 1 4.1584 -2.6231 -1.5896 7 6 3.0849 -2.7812 0.2603 8 7 2.0453 -2.3318 0.9264 9 14 3.9801 -4.3119 0.8479 10 1 5.3954 -3.9742 1.1448 11 1 3.3252 -4.8272 2.0769 12 1 3.9311 -5.3513 -0.2116 13 6 3.2063 -0.3072 -2.3513 14 8 3.5839 -1.0011 -3.2777 15 6 2.8300 1.0883 -2.5874 16 6 2.9958 1.7667 -3.7634 17 6 2.5597 3.0688 -3.7055 18 6 2.0536 3.4462 -2.5253 19 6 1.5160 4.8223 -2.2275 20 16 2.0994 2.1624 -1.4026 21 1 -1.0499 -0.0003 -0.0001 22 1 3.0096 -0.4066 0.9434 23 1 3.0088 1.0216 -0.1189 24 1 1.7429 -2.7948 1.7234 25 1 3.4268 1.3235 -4.6490 26 1 2.6209 3.7385 -4.5506 27 1 1.1673 4.8606 -1.1955 28 1 2.3057 5.5597 -2.3713 29 1 0.6868 5.0419 -2.9000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281475038.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:28 Heat of formation + Delta-G solvation = 68.897113 kcal Electronic energy + Delta-G solvation = -15702.293184 eV Core-core repulsion = 13105.657460 eV Total energy + Delta-G solvation = -2596.635724 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 249.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.78927 -37.23899 -35.14752 -32.47226 -31.42291 -31.28462 -27.31516 -26.43571 -24.61466 -22.83310 -20.71175 -18.14359 -17.75940 -17.36681 -16.70096 -15.24827 -15.10604 -14.33946 -14.33222 -13.89645 -13.60993 -13.07552 -12.64743 -12.57638 -12.46445 -11.94265 -11.70911 -11.52759 -11.25842 -11.06237 -10.67878 -10.44526 -9.84449 -9.49953 -9.46939 -9.11892 -8.62764 -8.10982 -7.96663 -7.70802 -6.47674 -3.97118 1.17944 2.13528 2.54308 2.97579 3.17372 3.18862 3.21997 3.65125 3.93482 4.09377 4.23997 4.84111 4.98547 5.17871 5.30788 5.43063 5.63509 5.68224 5.81631 5.96779 6.12111 6.18022 6.54020 6.58830 6.76609 6.90450 6.96965 7.42210 7.93209 8.29438 8.70201 8.99305 9.17680 9.77753 10.52652 Molecular weight = 249.06amu Principal moments of inertia in cm(-1) A = 0.035399 B = 0.007808 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.800261 B = 3585.069966 C = 4144.681260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.122 4.122 3 C 0.220 3.780 4 N -0.426 5.426 5 C -0.307 4.307 6 H 0.109 0.891 7 C 0.031 3.969 8 N -0.857 5.857 9 Si 0.929 3.071 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.508 3.492 14 O -0.575 6.575 15 C -0.224 4.224 16 C -0.095 4.095 17 C -0.150 4.150 18 C -0.268 4.268 19 C -0.074 4.074 20 S 0.228 5.772 21 H 0.203 0.797 22 H 0.126 0.874 23 H 0.069 0.931 24 H 0.273 0.727 25 H 0.142 0.858 26 H 0.127 0.873 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 10.529 0.687 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.125 4.125 3 C 0.095 3.905 4 N -0.142 5.142 5 C -0.435 4.435 6 H 0.126 0.874 7 C -0.174 4.174 8 N -0.494 5.494 9 Si 0.755 3.245 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.297 3.703 14 O -0.461 6.461 15 C -0.345 4.345 16 C -0.127 4.127 17 C -0.181 4.181 18 C -0.386 4.386 19 C -0.133 4.133 20 S 0.497 5.503 21 H 0.220 0.780 22 H 0.144 0.856 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.160 0.840 26 H 0.145 0.855 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.878 10.000 1.902 10.351 hybrid contribution 0.367 -0.554 -1.174 1.350 sum -1.511 9.446 0.728 9.593 Atomic orbital electron populations 1.24263 0.95297 1.04222 1.01837 1.22744 0.94088 0.96774 0.98935 1.18545 0.85166 0.92179 0.94626 1.43603 1.54267 1.11833 1.04523 1.19719 1.28065 0.88040 1.07658 0.87379 1.25416 0.95173 0.99504 0.97328 1.70033 1.20201 1.40885 1.18291 0.85940 0.79486 0.80877 0.78174 1.19626 1.20812 1.19613 1.16815 0.85200 0.84988 0.83249 1.90656 1.53011 1.60608 1.41800 1.25003 1.11207 0.99433 0.98875 1.20513 1.01210 0.93140 0.97879 1.19723 1.04144 0.96351 0.97854 1.24847 1.08799 1.03631 1.01370 1.20205 1.00395 0.91046 1.01607 1.83978 1.56162 0.98398 1.11730 0.78018 0.85644 0.91493 0.91636 0.83986 0.85541 0.91954 0.91403 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.78 19.25 29.55 0.57 -4.21 15 2 C -0.12 -2.69 8.99 -37.12 -0.33 -3.03 15 3 C 0.22 4.92 4.73 -6.83 -0.03 4.89 15 4 N -0.43 -11.01 2.60 -119.50 -0.31 -11.32 15 5 C -0.31 -8.37 9.30 -15.01 -0.14 -8.51 15 6 H 0.11 3.07 7.40 -52.49 -0.39 2.68 15 7 C 0.03 0.79 4.92 -17.45 -0.09 0.71 15 8 N -0.86 -21.79 9.48 55.50 0.53 -21.26 15 9 Si 0.93 19.87 29.59 -169.99 -5.03 14.84 15 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 13 C 0.51 13.24 7.50 -12.95 -0.10 13.14 15 14 O -0.58 -16.74 16.52 5.15 0.09 -16.65 15 15 C -0.22 -4.87 6.22 -36.81 -0.23 -5.10 15 16 C -0.09 -1.84 10.02 -40.40 -0.40 -2.24 15 17 C -0.15 -2.45 10.00 -41.41 -0.41 -2.86 15 18 C -0.27 -4.20 6.28 -35.85 -0.23 -4.42 15 19 C -0.07 -0.86 10.33 36.01 0.37 -0.49 15 20 S 0.23 4.04 16.09 -107.50 -1.73 2.31 15 21 H 0.20 3.28 7.80 -54.10 -0.42 2.86 15 22 H 0.13 2.88 6.35 -51.93 -0.33 2.55 15 23 H 0.07 1.34 4.52 -22.39 -0.10 1.24 15 24 H 0.27 6.60 8.31 -40.82 -0.34 6.26 15 25 H 0.14 2.69 8.06 -52.49 -0.42 2.26 15 26 H 0.13 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.06 0.67 8.11 -51.93 -0.42 0.24 15 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 LS Contribution 268.02 15.07 4.04 4.04 Total: -1.00 -30.60 268.02 -5.93 -36.53 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -2.49 Total: 3.63 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.02 Total: -12.13 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.21 Total: -32.58 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.09 Total: -16.65 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.73 Total: 2.31 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.60 -5.93 -36.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281475038.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.431 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds