Wall clock time and date at job start Thu Apr 9 2020 12:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47112 * 53.36014 * 3 2 1 5 5 C 1.36886 * 120.00175 * 262.01993 * 4 3 2 6 6 H 1.07997 * 120.00248 * 199.50300 * 5 4 3 7 7 C 1.39002 * 119.99874 * 19.50500 * 5 4 3 8 8 N 1.31397 * 119.99781 * 18.50655 * 7 5 4 9 9 Si 1.86804 * 120.00226 * 198.50403 * 7 5 4 10 10 H 1.48494 * 109.46860 * 59.99685 * 9 7 5 11 11 H 1.48495 * 109.46971 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46938 * 300.00105 * 9 7 5 13 13 C 1.34787 * 120.00101 * 82.02029 * 4 3 2 14 14 O 1.21741 * 119.99940 * 181.65572 * 13 4 3 15 15 C 1.46453 * 119.99421 * 1.65672 * 13 4 3 16 16 C 1.36771 * 125.45727 * 172.45123 * 15 13 4 17 17 C 1.37446 * 113.28018 * 180.26373 * 16 15 13 18 18 C 1.33850 * 115.10312 * 359.97438 * 17 16 15 19 19 C 1.50704 * 124.51218 * 179.97438 * 18 17 16 20 20 S 1.70608 * 110.97212 * 0.02562 * 18 17 16 21 21 H 4.40642 * 5.51364 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.47621 * 293.35814 * 3 2 1 23 23 H 1.09000 * 109.46873 * 173.35844 * 3 2 1 24 24 H 0.97008 * 119.99577 * 180.02562 * 8 7 5 25 25 H 1.07999 * 123.35935 * 0.23688 * 16 15 13 26 26 H 1.07991 * 122.44793 * 179.97438 * 17 16 15 27 27 H 1.08998 * 109.47054 * 180.02562 * 19 18 17 28 28 H 1.08998 * 109.46973 * 299.99563 * 19 18 17 29 29 H 1.09000 * 109.47527 * 59.99727 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8234 -1.1083 5 6 3.5186 -2.1176 -0.8815 6 1 4.1584 -2.6231 -1.5896 7 6 3.0849 -2.7812 0.2603 8 7 2.0453 -2.3318 0.9264 9 14 3.9801 -4.3119 0.8479 10 1 5.3954 -3.9742 1.1448 11 1 3.3252 -4.8272 2.0769 12 1 3.9311 -5.3513 -0.2116 13 6 3.2063 -0.3072 -2.3513 14 8 3.5839 -1.0011 -3.2777 15 6 2.8300 1.0883 -2.5874 16 6 2.9958 1.7667 -3.7634 17 6 2.5597 3.0688 -3.7055 18 6 2.0536 3.4462 -2.5253 19 6 1.5160 4.8223 -2.2275 20 16 2.0994 2.1624 -1.4026 21 1 -1.0499 -0.0003 -0.0001 22 1 3.0096 -0.4066 0.9434 23 1 3.0088 1.0216 -0.1189 24 1 1.7429 -2.7948 1.7234 25 1 3.4268 1.3235 -4.6490 26 1 2.6209 3.7385 -4.5506 27 1 1.1673 4.8606 -1.1955 28 1 2.3057 5.5597 -2.3713 29 1 0.6868 5.0419 -2.9000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281475038.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:28 Heat of formation + Delta-G solvation = 50.431564 kcal Electronic energy + Delta-G solvation = -15703.093911 eV Core-core repulsion = 13105.657460 eV Total energy + Delta-G solvation = -2597.436450 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 249.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65355 -38.69152 -37.07063 -34.29388 -33.14327 -32.67958 -28.94618 -28.09177 -26.34903 -24.23680 -22.37065 -19.87137 -19.37779 -19.06543 -18.45904 -16.98621 -16.68662 -16.09425 -16.04068 -15.53272 -14.79088 -14.77031 -14.33676 -14.08888 -13.84622 -13.58350 -13.16179 -12.92412 -12.83436 -12.58656 -12.56417 -12.15142 -11.34412 -11.24193 -11.15833 -10.87704 -10.59080 -9.99820 -9.44307 -9.19164 -8.40879 -6.01980 -0.30168 0.66016 1.13867 1.37550 1.41900 1.52095 1.58819 1.95836 2.24592 2.34379 2.41039 3.01874 3.10332 3.69980 3.97944 4.05714 4.39554 4.47661 4.53794 4.78246 4.81088 4.82345 5.15434 5.18057 5.31870 5.34607 5.39131 5.60508 5.97436 6.34169 7.00962 7.06861 7.23746 7.82988 8.57789 Molecular weight = 249.06amu Principal moments of inertia in cm(-1) A = 0.035399 B = 0.007808 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.800261 B = 3585.069966 C = 4144.681260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.163 4.163 3 C 0.223 3.777 4 N -0.437 5.437 5 C -0.354 4.354 6 H 0.079 0.921 7 C 0.006 3.994 8 N -0.866 5.866 9 Si 0.993 3.007 10 H -0.264 1.264 11 H -0.267 1.267 12 H -0.279 1.279 13 C 0.495 3.505 14 O -0.628 6.628 15 C -0.284 4.284 16 C -0.082 4.082 17 C -0.162 4.162 18 C -0.238 4.238 19 C -0.078 4.078 20 S 0.249 5.751 21 H 0.240 0.760 22 H 0.112 0.888 23 H 0.090 0.910 24 H 0.279 0.721 25 H 0.135 0.865 26 H 0.163 0.837 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 12.909 1.475 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.166 4.166 3 C 0.099 3.901 4 N -0.153 5.153 5 C -0.481 4.481 6 H 0.097 0.903 7 C -0.199 4.199 8 N -0.502 5.502 9 Si 0.816 3.184 10 H -0.189 1.189 11 H -0.191 1.191 12 H -0.204 1.204 13 C 0.286 3.714 14 O -0.518 6.518 15 C -0.404 4.404 16 C -0.116 4.116 17 C -0.191 4.191 18 C -0.357 4.357 19 C -0.136 4.136 20 S 0.519 5.481 21 H 0.256 0.744 22 H 0.130 0.870 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.153 0.847 26 H 0.180 0.820 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.276 12.403 2.738 13.117 hybrid contribution 0.702 -1.107 -1.479 1.977 sum -2.573 11.296 1.258 11.653 Atomic orbital electron populations 1.25161 0.96208 1.02318 0.99883 1.22874 0.94466 0.98543 1.00713 1.18550 0.85954 0.92777 0.92789 1.43763 1.54302 1.11812 1.05393 1.19639 1.30043 0.89638 1.08808 0.90312 1.26124 0.95397 1.01941 0.96397 1.70111 1.20256 1.41640 1.18180 0.85009 0.78723 0.77007 0.77666 1.18895 1.19123 1.20431 1.17489 0.84350 0.86746 0.82787 1.90576 1.55338 1.62647 1.43268 1.24680 1.15552 0.98574 1.01598 1.20792 0.99524 0.94426 0.96827 1.19946 1.04326 0.95291 0.99520 1.25417 1.05662 1.04577 1.00021 1.20437 1.01760 0.88413 1.02981 1.83675 1.55347 0.97942 1.11161 0.74400 0.87039 0.89373 0.91111 0.84680 0.81978 0.90726 0.88980 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.38 19.25 74.32 1.43 -6.95 15 2 C -0.16 -7.14 8.99 31.13 0.28 -6.86 15 3 C 0.22 10.24 4.73 84.57 0.40 10.64 15 4 N -0.44 -23.77 2.60 -650.18 -1.69 -25.47 15 5 C -0.35 -20.41 9.30 84.09 0.78 -19.62 15 6 H 0.08 4.86 7.40 -2.91 -0.02 4.84 15 7 C 0.01 0.32 4.92 84.94 0.42 0.74 15 8 N -0.87 -44.36 9.48 21.67 0.21 -44.15 15 9 Si 0.99 41.47 29.59 68.60 2.03 43.50 15 10 H -0.26 -10.68 7.11 99.48 0.71 -9.98 15 11 H -0.27 -10.38 7.11 99.48 0.71 -9.68 15 12 H -0.28 -11.93 7.11 99.48 0.71 -11.23 15 13 C 0.49 27.28 7.50 86.38 0.65 27.93 15 14 O -0.63 -39.27 16.52 -4.48 -0.07 -39.34 15 15 C -0.28 -12.56 6.22 24.07 0.15 -12.42 15 16 C -0.08 -3.14 10.02 21.74 0.22 -2.92 15 17 C -0.16 -4.78 10.00 21.08 0.21 -4.57 15 18 C -0.24 -6.56 6.28 24.69 0.16 -6.40 15 19 C -0.08 -1.39 10.33 71.24 0.74 -0.65 15 20 S 0.25 8.45 16.09 -56.49 -0.91 7.54 15 21 H 0.24 6.95 7.80 -4.42 -0.03 6.91 15 22 H 0.11 5.30 6.35 -2.39 -0.02 5.28 15 23 H 0.09 3.56 4.52 -21.17 -0.10 3.47 15 24 H 0.28 13.32 8.31 -92.70 -0.77 12.55 15 25 H 0.14 5.25 8.06 -2.91 -0.02 5.22 15 26 H 0.16 3.65 8.06 -2.91 -0.02 3.63 15 27 H 0.07 1.20 8.11 -2.39 -0.02 1.18 15 28 H 0.09 1.32 8.14 -2.39 -0.02 1.30 15 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 Total: -1.00 -70.24 268.02 6.06 -64.18 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.08 Total: 14.83 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 5.43 Total: -21.09 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -1.49 Total: -69.62 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.07 Total: -39.34 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 8.45 SS G_CDS: -0.91 Total: 7.54 kcal Total: -70.24 6.06 -64.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281475038.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.610 kcal (2) G-P(sol) polarization free energy of solvation -70.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds