Wall clock time and date at job start Thu Apr 9 2020 12:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47072 * 2 1 4 4 H 1.08996 * 109.47569 * 54.84129 * 3 2 1 5 5 C 1.50701 * 109.47226 * 174.84531 * 3 2 1 6 6 H 1.08000 * 120.00130 * 119.99718 * 5 3 2 7 7 C 1.37871 * 119.99813 * 299.99634 * 5 3 2 8 8 N 1.31516 * 119.99888 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99965 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47011 * 90.00332 * 9 7 5 11 11 H 1.48497 * 109.46970 * 209.99923 * 9 7 5 12 12 H 1.48493 * 109.47446 * 329.99912 * 9 7 5 13 13 N 1.46911 * 109.46876 * 294.84349 * 3 2 1 14 14 C 1.46900 * 110.99695 * 155.25665 * 13 3 2 15 15 H 1.09000 * 109.47539 * 35.66506 * 14 13 3 16 16 C 1.52996 * 109.47006 * 275.66156 * 14 13 3 17 17 C 1.50699 * 109.46637 * 155.66425 * 14 13 3 18 18 C 1.38232 * 119.61844 * 204.72886 * 17 14 13 19 19 C 1.38631 * 119.16160 * 179.71675 * 18 17 14 20 20 C 1.50695 * 120.78648 * 180.30404 * 19 18 17 21 21 C 1.38667 * 118.42060 * 0.53914 * 19 18 17 22 22 C 1.38183 * 119.16290 * 359.74228 * 21 19 18 23 23 N 1.31849 * 119.62066 * 24.99840 * 17 14 13 24 24 H 1.09000 * 109.46889 * 185.09044 * 1 2 3 25 25 H 1.08996 * 109.47807 * 305.09290 * 1 2 3 26 26 H 1.08997 * 109.46778 * 65.09657 * 1 2 3 27 27 H 1.09002 * 109.47417 * 239.99433 * 2 1 3 28 28 H 1.09005 * 109.47006 * 119.99462 * 2 1 3 29 29 H 0.97005 * 120.00074 * 180.02562 * 8 7 5 30 30 H 1.00897 * 110.99475 * 279.21266 * 13 3 2 31 31 H 1.08996 * 109.47405 * 295.40954 * 16 14 13 32 32 H 1.08999 * 109.47030 * 55.41837 * 16 14 13 33 33 H 1.09011 * 109.46950 * 175.41400 * 16 14 13 34 34 H 1.08003 * 120.41847 * 359.97436 * 18 17 14 35 35 H 1.09000 * 109.47460 * 270.24148 * 20 19 18 36 36 H 1.09002 * 109.47959 * 30.24625 * 20 19 18 37 37 H 1.09004 * 109.47183 * 150.24596 * 20 19 18 38 38 H 1.07994 * 120.41947 * 179.71358 * 21 19 18 39 39 H 1.07999 * 119.61919 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6032 1.9823 0.8401 5 6 3.5416 1.4444 0.1277 6 1 4.1489 1.8882 -0.6473 7 6 4.1401 0.8796 1.2338 8 7 5.4505 0.8817 1.3455 9 14 3.0897 0.1126 2.5746 10 1 2.8686 -1.3238 2.2694 11 1 3.7841 0.2397 3.8810 12 1 1.7813 0.8119 2.6395 13 7 1.6545 2.0981 -1.2569 14 6 1.5812 3.5556 -1.0894 15 1 2.3592 3.8817 -0.3991 16 6 0.2095 3.9361 -0.5286 17 6 1.7814 4.2253 -2.4245 18 6 2.2588 5.5216 -2.4738 19 6 2.4451 6.1265 -3.7072 20 6 2.9701 7.5357 -3.8038 21 6 2.1321 5.4057 -4.8497 22 6 1.6535 4.1157 -4.7220 23 7 1.4942 3.5699 -3.5319 24 1 -0.3633 -1.0236 0.0912 25 1 -0.3634 0.5908 0.8408 26 1 -0.3633 0.4327 -0.9321 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 5.8716 0.4840 2.1236 30 1 2.2879 1.8511 -2.0025 31 1 -0.5628 3.6838 -1.2552 32 1 0.0307 3.3886 0.3968 33 1 0.1835 5.0072 -0.3278 34 1 2.4878 6.0551 -1.5630 35 1 2.1351 8.2362 -3.7912 36 1 3.6267 7.7378 -2.9575 37 1 3.5284 7.6526 -4.7327 38 1 2.2603 5.8470 -5.8270 39 1 1.4070 3.5477 -5.6069 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289651852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:33 Heat of formation + Delta-G solvation = 26.581903 kcal Electronic energy + Delta-G solvation = -18273.437097 eV Core-core repulsion = 15601.598428 eV Total energy + Delta-G solvation = -2671.838669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.13525 -36.79320 -34.09975 -33.27625 -31.88762 -30.33989 -28.72096 -27.73218 -26.38943 -23.68575 -22.64657 -22.25500 -19.98500 -19.41953 -17.00667 -16.33778 -16.05605 -15.35473 -14.98301 -14.33373 -14.20896 -13.81789 -13.44531 -12.99368 -12.74620 -12.62571 -12.54611 -12.42536 -12.05203 -11.79007 -11.67654 -11.46793 -11.32391 -10.81393 -10.68824 -10.55646 -10.19509 -9.70525 -9.42639 -9.31285 -9.15163 -9.06023 -8.72363 -8.53688 -7.22466 -6.09663 -4.10292 1.33744 1.46105 3.28931 3.38737 3.41604 4.01514 4.40005 4.56572 4.68245 4.80202 5.14597 5.21873 5.26495 5.32077 5.43778 5.51255 5.61897 5.82457 5.93987 5.95460 6.02142 6.08212 6.13406 6.14961 6.29564 6.40085 6.44203 6.49327 6.70566 6.76596 6.82078 6.95372 7.07255 7.18715 7.34978 7.62715 8.08876 8.35731 8.48277 8.60767 8.94090 9.54358 11.03332 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.006203 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.418264 B = 4512.576628 C = 4968.495378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.180 3.820 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.070 0.930 7 C 0.072 3.928 8 N -0.900 5.900 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.661 5.661 14 C 0.134 3.866 15 H 0.066 0.934 16 C -0.129 4.129 17 C 0.148 3.852 18 C -0.171 4.171 19 C -0.046 4.046 20 C -0.114 4.114 21 C -0.190 4.190 22 C 0.101 3.899 23 N -0.464 5.464 24 H 0.030 0.970 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.343 0.657 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.171 10.111 -8.626 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C 0.071 3.929 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.292 5.292 14 C 0.023 3.977 15 H 0.084 0.916 16 C -0.188 4.188 17 C 0.010 3.990 18 C -0.192 4.192 19 C -0.054 4.054 20 C -0.171 4.171 21 C -0.210 4.210 22 C -0.056 4.056 23 N -0.173 5.173 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.149 0.851 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.145 0.855 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.010 9.115 -8.354 15.299 hybrid contribution 1.035 0.577 0.701 1.377 sum -7.976 9.692 -7.653 14.701 Atomic orbital electron populations 1.21716 0.97529 0.98985 1.01619 1.21781 0.93875 0.99277 1.00240 1.19662 0.94031 0.90766 0.88442 0.94937 1.21788 0.90718 1.38965 1.06904 0.91163 1.25014 0.94755 0.95298 0.97957 1.69928 1.08973 1.45174 1.29654 0.86803 0.80616 0.79928 0.80568 1.20477 1.22731 1.18890 1.60720 1.56208 1.03902 1.08388 1.20337 0.97486 0.90375 0.89519 0.91587 1.21744 0.96394 0.99380 1.01239 1.21583 0.91914 0.90729 0.94805 1.21856 1.02644 0.96534 0.98130 1.20247 0.95702 0.96404 0.93065 1.20796 1.01030 0.92181 1.03076 1.21944 1.03733 0.96629 0.98711 1.22772 0.94837 0.92449 0.95590 1.67544 1.14876 1.37113 0.97797 0.95051 0.94250 0.91837 0.92429 0.93900 0.92714 0.83882 0.92484 0.91882 0.93542 0.85070 0.90851 0.91066 0.91296 0.85472 0.83139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.74 37.16 0.36 -2.32 16 2 C -0.11 -2.55 5.11 -26.73 -0.14 -2.68 16 3 C 0.18 4.26 1.37 -68.86 -0.09 4.16 16 4 H 0.03 0.80 6.10 -51.93 -0.32 0.48 16 5 C -0.54 -15.20 8.83 -34.44 -0.30 -15.50 16 6 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 9 Si 0.89 22.20 24.41 -169.99 -4.15 18.05 16 10 H -0.28 -6.80 6.83 56.52 0.39 -6.42 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 13 N -0.66 -13.91 5.34 -102.17 -0.55 -14.46 16 14 C 0.13 2.52 2.68 -68.87 -0.18 2.33 16 15 H 0.07 1.36 7.60 -51.93 -0.39 0.97 16 16 C -0.13 -2.12 9.39 37.16 0.35 -1.77 16 17 C 0.15 2.55 5.70 -82.59 -0.47 2.08 16 18 C -0.17 -2.54 9.47 -39.44 -0.37 -2.91 16 19 C -0.05 -0.59 5.92 -104.32 -0.62 -1.20 16 20 C -0.11 -1.05 10.06 36.00 0.36 -0.68 16 21 C -0.19 -2.31 9.82 -39.44 -0.39 -2.70 16 22 C 0.10 1.40 11.18 -17.55 -0.20 1.20 16 23 N -0.46 -7.98 9.30 -9.47 -0.09 -8.06 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.18 7.90 -51.93 -0.41 0.77 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.04 1.02 3.22 -51.93 -0.17 0.85 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.34 7.67 7.57 -39.29 -0.30 7.38 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.07 7.32 -51.93 -0.38 0.69 16 33 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 313.44 15.07 4.72 4.72 Total: -1.00 -30.78 313.44 -7.29 -38.07 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.22 Total: 6.50 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.79 Total: -18.01 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.14 Total: -49.32 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.15 Total: 18.05 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.78 -7.29 -38.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289651852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.654 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds