Wall clock time and date at job start Thu Apr 9 2020 12:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52107 * 115.19255 * 2 1 4 4 C 1.51706 * 112.46108 * 229.71705 * 3 2 1 5 5 N 1.45320 * 111.99728 * 318.65719 * 4 3 2 6 6 C 1.36928 * 118.81989 * 235.90356 * 5 4 3 7 7 H 1.07998 * 120.00271 * 149.93776 * 6 5 4 8 8 C 1.38819 * 120.00169 * 329.93957 * 6 5 4 9 9 N 1.31608 * 120.00084 * 143.98829 * 8 6 5 10 10 Si 1.86800 * 119.99631 * 324.26314 * 8 6 5 11 11 H 1.48503 * 109.47244 * 269.72518 * 10 8 6 12 12 H 1.48504 * 109.47218 * 29.72266 * 10 8 6 13 13 H 1.48502 * 109.46972 * 149.72435 * 10 8 6 14 14 C 1.45521 * 122.35980 * 56.18192 * 5 4 3 15 15 C 1.51961 * 116.97469 * 207.91504 * 2 1 3 16 16 H 1.09003 * 115.77367 * 0.59431 * 15 2 1 17 17 C 1.52120 * 60.77052 * 254.06407 * 15 2 1 18 18 Cl 1.80308 * 117.54162 * 252.63657 * 17 15 2 19 19 Cl 1.80297 * 117.54477 * 107.36568 * 17 15 2 20 20 H 1.09001 * 109.46761 * 85.58351 * 1 2 3 21 21 H 1.08997 * 109.46846 * 205.57862 * 1 2 3 22 22 H 1.08998 * 109.47451 * 325.58011 * 1 2 3 23 23 H 1.09005 * 108.88161 * 108.94814 * 3 2 1 24 24 H 1.08994 * 108.80399 * 350.43405 * 3 2 1 25 25 H 1.08994 * 108.98182 * 198.01016 * 4 3 2 26 26 H 1.09006 * 108.91207 * 79.25915 * 4 3 2 27 27 H 0.96998 * 120.00182 * 355.18374 * 9 8 6 28 28 H 1.09005 * 109.11946 * 80.29842 * 14 5 4 29 29 H 1.08995 * 109.11893 * 199.37128 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1775 1.3764 0.0000 4 6 3.2445 1.5150 -1.0695 5 7 4.0699 0.3234 -1.1726 6 6 5.4270 0.4468 -1.0380 7 1 6.0059 -0.3697 -0.6323 8 6 6.0587 1.6214 -1.4230 9 7 7.0873 2.0711 -0.7360 10 14 5.4440 2.5679 -2.9115 11 1 6.1488 2.0895 -4.1280 12 1 3.9834 2.3502 -3.0680 13 1 5.7112 4.0164 -2.7220 14 6 3.5065 -0.9954 -1.4197 15 6 2.2194 -1.1967 -0.6340 16 1 1.5596 -1.9586 -1.0492 17 6 2.2073 -1.0632 0.8813 18 17 3.7541 -0.6130 1.6909 19 17 1.1390 -2.1814 1.8082 20 1 -0.3633 0.0791 -1.0246 21 1 -0.3633 -0.9269 0.4437 22 1 -0.3634 0.8477 0.5809 23 1 2.6307 1.5530 0.9755 24 1 1.4064 2.1274 -0.1715 25 1 3.8803 2.3667 -0.8277 26 1 2.7610 1.6954 -2.0297 27 1 7.3606 1.6210 0.0786 28 1 3.2990 -1.1012 -2.4845 29 1 4.2296 -1.7542 -1.1208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306749364.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:00 Heat of formation + Delta-G solvation = 37.125393 kcal Electronic energy + Delta-G solvation = -15048.367803 eV Core-core repulsion = 12445.877797 eV Total energy + Delta-G solvation = -2602.490005 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 249.038 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41484 -36.02326 -35.37952 -34.59723 -31.53979 -31.21750 -28.00809 -25.88576 -23.31987 -21.98935 -20.22854 -18.19221 -16.76671 -15.92651 -15.13322 -14.80627 -14.40005 -13.58076 -13.27285 -13.00478 -12.74326 -12.21243 -12.05584 -11.95596 -11.59371 -11.25850 -11.17542 -10.79397 -10.62561 -10.47621 -10.20187 -9.77898 -9.73263 -9.39370 -9.21351 -9.15043 -8.22485 -6.94103 -6.33159 -3.23933 1.60075 2.73869 3.50813 3.52652 3.59275 3.72636 4.52297 4.63602 4.67650 4.95400 5.17487 5.23327 5.43581 5.66451 5.72793 5.82192 5.97143 6.05125 6.19678 6.34678 6.38756 6.50772 6.60258 6.82348 6.95283 8.18756 8.52605 9.08593 9.69491 10.22843 11.06528 Molecular weight = 249.04amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.009324 C = 0.008322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.520287 B = 3002.187318 C = 3363.813669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.113 4.113 4 C 0.151 3.849 5 N -0.587 5.587 6 C -0.357 4.357 7 H 0.062 0.938 8 C 0.006 3.994 9 N -0.898 5.898 10 Si 1.014 2.986 11 H -0.299 1.299 12 H -0.269 1.269 13 H -0.295 1.295 14 C 0.178 3.822 15 C -0.117 4.117 16 H 0.113 0.887 17 C -0.001 4.001 18 Cl -0.062 7.062 19 Cl -0.127 7.127 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.267 0.733 28 H 0.032 0.968 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.258 -4.905 1.770 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.152 4.152 4 C 0.025 3.975 5 N -0.310 5.310 6 C -0.485 4.485 7 H 0.080 0.920 8 C -0.198 4.198 9 N -0.534 5.534 10 Si 0.843 3.157 11 H -0.227 1.227 12 H -0.195 1.195 13 H -0.222 1.222 14 C 0.052 3.948 15 C -0.137 4.137 16 H 0.131 0.869 17 C -0.052 4.052 18 Cl -0.035 7.035 19 Cl -0.100 7.100 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.887 -3.661 0.985 13.433 hybrid contribution -0.285 -1.532 1.187 1.959 sum -13.172 -5.193 2.172 14.324 Atomic orbital electron populations 1.21630 0.91326 1.03024 1.02412 1.22057 0.95012 0.92615 0.97607 1.21405 0.98931 0.91821 1.03077 1.20700 0.91717 0.90608 0.94477 1.43398 1.03735 1.00920 1.82937 1.19980 0.82244 1.04169 1.42110 0.91988 1.26090 0.95829 0.95938 1.01955 1.70877 1.30047 1.37075 1.15412 0.84691 0.76738 0.75884 0.78370 1.22701 1.19512 1.22216 1.19955 0.90208 0.89776 0.94910 1.23316 1.01942 0.98712 0.89772 0.86946 1.27362 0.88144 1.00171 0.89540 1.98777 1.31001 1.92034 1.81640 1.98681 1.67475 1.66212 1.77603 0.91418 0.91429 0.91647 0.90722 0.91651 0.91064 0.95639 0.92335 0.95070 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.45 37.16 0.35 -1.21 15 2 C -0.07 -1.11 2.59 -155.07 -0.40 -1.52 15 3 C -0.11 -1.96 5.28 -27.84 -0.15 -2.11 15 4 C 0.15 3.15 4.34 -5.33 -0.02 3.13 15 5 N -0.59 -13.22 1.66 -176.26 -0.29 -13.52 15 6 C -0.36 -9.47 9.21 -15.06 -0.14 -9.61 15 7 H 0.06 1.80 7.99 -52.49 -0.42 1.38 15 8 C 0.01 0.17 4.71 -17.43 -0.08 0.09 15 9 N -0.90 -26.91 13.70 55.49 0.76 -26.15 15 10 Si 1.01 24.51 26.97 -169.99 -4.58 19.93 15 11 H -0.30 -7.30 7.11 56.52 0.40 -6.90 15 12 H -0.27 -5.93 4.80 56.52 0.27 -5.65 15 13 H -0.30 -7.30 7.11 56.52 0.40 -6.90 15 14 C 0.18 3.43 6.00 -5.01 -0.03 3.40 15 15 C -0.12 -1.89 5.52 -92.04 -0.51 -2.40 15 16 H 0.11 1.56 8.14 -51.93 -0.42 1.14 15 17 C 0.00 -0.01 3.59 -26.76 -0.10 -0.11 15 18 Cl -0.06 -1.21 25.59 -51.86 -1.33 -2.53 15 19 Cl -0.13 -1.85 27.20 -51.86 -1.41 -3.26 15 20 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 21 H 0.07 0.81 6.08 -51.93 -0.32 0.49 15 22 H 0.06 0.75 8.00 -51.93 -0.42 0.33 15 23 H 0.07 1.40 6.86 -51.93 -0.36 1.04 15 24 H 0.06 0.97 7.77 -51.93 -0.40 0.56 15 25 H 0.07 1.64 5.53 -51.93 -0.29 1.35 15 26 H 0.03 0.53 6.55 -51.93 -0.34 0.19 15 27 H 0.27 8.02 8.73 -40.82 -0.36 7.66 15 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 29 H 0.07 1.32 7.85 -51.93 -0.41 0.92 15 LS Contribution 254.61 15.07 3.84 3.84 Total: -1.00 -28.35 254.61 -7.59 -35.94 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -3.50 Total: -3.90 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.08 Total: -10.34 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.47 Total: -39.67 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -4.58 Total: 19.93 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -2.74 Total: -5.79 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.35 -7.59 -35.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306749364.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.063 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds