Wall clock time and date at job start Thu Apr 9 2020 12:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52107 * 115.19255 * 2 1 4 4 C 1.51706 * 112.46108 * 229.71705 * 3 2 1 5 5 N 1.45320 * 111.99728 * 318.65719 * 4 3 2 6 6 C 1.36928 * 118.81989 * 235.90356 * 5 4 3 7 7 H 1.07998 * 120.00271 * 149.93776 * 6 5 4 8 8 C 1.38819 * 120.00169 * 329.93957 * 6 5 4 9 9 N 1.31608 * 120.00084 * 143.98829 * 8 6 5 10 10 Si 1.86800 * 119.99631 * 324.26314 * 8 6 5 11 11 H 1.48503 * 109.47244 * 269.72518 * 10 8 6 12 12 H 1.48504 * 109.47218 * 29.72266 * 10 8 6 13 13 H 1.48502 * 109.46972 * 149.72435 * 10 8 6 14 14 C 1.45521 * 122.35980 * 56.18192 * 5 4 3 15 15 C 1.51961 * 116.97469 * 207.91504 * 2 1 3 16 16 H 1.09003 * 115.77367 * 0.59431 * 15 2 1 17 17 C 1.52120 * 60.77052 * 254.06407 * 15 2 1 18 18 Cl 1.80308 * 117.54162 * 252.63657 * 17 15 2 19 19 Cl 1.80297 * 117.54477 * 107.36568 * 17 15 2 20 20 H 1.09001 * 109.46761 * 85.58351 * 1 2 3 21 21 H 1.08997 * 109.46846 * 205.57862 * 1 2 3 22 22 H 1.08998 * 109.47451 * 325.58011 * 1 2 3 23 23 H 1.09005 * 108.88161 * 108.94814 * 3 2 1 24 24 H 1.08994 * 108.80399 * 350.43405 * 3 2 1 25 25 H 1.08994 * 108.98182 * 198.01016 * 4 3 2 26 26 H 1.09006 * 108.91207 * 79.25915 * 4 3 2 27 27 H 0.96998 * 120.00182 * 355.18374 * 9 8 6 28 28 H 1.09005 * 109.11946 * 80.29842 * 14 5 4 29 29 H 1.08995 * 109.11893 * 199.37128 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1775 1.3764 0.0000 4 6 3.2445 1.5150 -1.0695 5 7 4.0699 0.3234 -1.1726 6 6 5.4270 0.4468 -1.0380 7 1 6.0059 -0.3697 -0.6323 8 6 6.0587 1.6214 -1.4230 9 7 7.0873 2.0711 -0.7360 10 14 5.4440 2.5679 -2.9115 11 1 6.1488 2.0895 -4.1280 12 1 3.9834 2.3502 -3.0680 13 1 5.7112 4.0164 -2.7220 14 6 3.5065 -0.9954 -1.4197 15 6 2.2194 -1.1967 -0.6340 16 1 1.5596 -1.9586 -1.0492 17 6 2.2073 -1.0632 0.8813 18 17 3.7541 -0.6130 1.6909 19 17 1.1390 -2.1814 1.8082 20 1 -0.3633 0.0791 -1.0246 21 1 -0.3633 -0.9269 0.4437 22 1 -0.3634 0.8477 0.5809 23 1 2.6307 1.5530 0.9755 24 1 1.4064 2.1274 -0.1715 25 1 3.8803 2.3667 -0.8277 26 1 2.7610 1.6954 -2.0297 27 1 7.3606 1.6210 0.0786 28 1 3.2990 -1.1012 -2.4845 29 1 4.2296 -1.7542 -1.1208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306749364.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:00 Heat of formation + Delta-G solvation = 21.359602 kcal Electronic energy + Delta-G solvation = -15049.051459 eV Core-core repulsion = 12445.877797 eV Total energy + Delta-G solvation = -2603.173661 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 249.038 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79845 -37.42876 -36.79242 -36.17923 -33.52670 -32.66883 -29.27241 -27.48555 -24.95264 -23.73792 -21.57267 -19.98884 -18.42073 -17.29371 -16.61449 -16.42597 -16.02476 -15.33058 -14.72228 -14.53751 -14.16628 -13.57530 -13.49365 -13.32596 -12.95649 -12.85966 -12.60051 -12.36100 -12.10234 -11.97212 -11.69773 -11.63093 -11.21822 -11.15411 -10.74641 -10.51093 -10.27209 -8.88267 -8.47812 -5.34886 0.31395 1.41076 1.58024 1.63213 1.81220 2.23175 2.67442 3.03362 3.24147 3.36037 3.60899 3.95483 4.01919 4.31865 4.46449 4.66479 4.70973 4.87289 4.91756 4.94495 5.05992 5.12004 5.19196 5.27276 5.45901 5.99923 6.39286 7.03915 7.76888 8.19023 8.88078 Molecular weight = 249.04amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.009324 C = 0.008322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.520287 B = 3002.187318 C = 3363.813669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.061 4.061 3 C -0.110 4.110 4 C 0.147 3.853 5 N -0.598 5.598 6 C -0.330 4.330 7 H 0.022 0.978 8 C -0.049 4.049 9 N -0.940 5.940 10 Si 1.062 2.938 11 H -0.301 1.301 12 H -0.231 1.231 13 H -0.305 1.305 14 C 0.174 3.826 15 C -0.114 4.114 16 H 0.146 0.854 17 C -0.011 4.011 18 Cl -0.101 7.101 19 Cl -0.104 7.104 20 H 0.088 0.912 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.099 0.901 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.249 0.751 28 H 0.050 0.950 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.808 -5.211 0.634 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.062 4.062 3 C -0.149 4.149 4 C 0.021 3.979 5 N -0.321 5.321 6 C -0.459 4.459 7 H 0.040 0.960 8 C -0.246 4.246 9 N -0.580 5.580 10 Si 0.887 3.113 11 H -0.230 1.230 12 H -0.155 1.155 13 H -0.232 1.232 14 C 0.049 3.951 15 C -0.134 4.134 16 H 0.164 0.836 17 C -0.062 4.062 18 Cl -0.074 7.074 19 Cl -0.077 7.077 20 H 0.107 0.893 21 H 0.091 0.909 22 H 0.096 0.904 23 H 0.074 0.926 24 H 0.118 0.882 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.492 -3.997 -0.153 16.971 hybrid contribution 0.771 -1.571 1.610 2.378 sum -15.722 -5.568 1.457 16.742 Atomic orbital electron populations 1.21660 0.88053 1.03932 1.04113 1.22197 0.97083 0.91042 0.95915 1.21305 0.98774 0.94182 1.00672 1.20728 0.91981 0.88874 0.96294 1.43436 1.02414 1.02835 1.83404 1.19726 0.84243 1.02430 1.39546 0.95995 1.27129 0.95945 0.97693 1.03849 1.71006 1.32633 1.38364 1.15966 0.84071 0.78525 0.73978 0.74676 1.22970 1.15450 1.23220 1.20012 0.91267 0.87435 0.96425 1.23290 1.00851 1.00260 0.89043 0.83646 1.27461 0.87381 1.01689 0.89697 1.98777 1.33857 1.92418 1.82364 1.98685 1.66313 1.65462 1.77243 0.89318 0.90901 0.90380 0.92571 0.88214 0.93734 0.94043 0.94239 0.93250 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 9.45 71.98 0.68 -1.66 15 2 C -0.06 -1.67 2.59 -52.54 -0.14 -1.80 15 3 C -0.11 -3.50 5.28 29.87 0.16 -3.35 15 4 C 0.15 5.79 4.34 86.18 0.37 6.16 15 5 N -0.60 -26.33 1.66 -711.57 -1.18 -27.51 15 6 C -0.33 -17.90 9.21 84.04 0.77 -17.13 15 7 H 0.02 1.36 7.99 -2.91 -0.02 1.33 15 8 C -0.05 -2.77 4.71 84.87 0.40 -2.37 15 9 N -0.94 -58.76 13.70 21.65 0.30 -58.46 15 10 Si 1.06 49.71 26.97 68.60 1.85 51.56 15 11 H -0.30 -14.14 7.11 99.48 0.71 -13.43 15 12 H -0.23 -9.22 4.80 99.48 0.48 -8.74 15 13 H -0.30 -14.69 7.11 99.48 0.71 -13.98 15 14 C 0.17 6.39 6.00 86.28 0.52 6.91 15 15 C -0.11 -3.33 5.52 -11.71 -0.06 -3.39 15 16 H 0.15 3.32 8.14 -2.39 -0.02 3.30 15 17 C -0.01 -0.34 3.59 30.58 0.11 -0.23 15 18 Cl -0.10 -3.97 25.59 -2.72 -0.07 -4.04 15 19 Cl -0.10 -2.74 27.20 -2.72 -0.07 -2.81 15 20 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 21 H 0.07 1.36 6.08 -2.39 -0.01 1.35 15 22 H 0.08 1.36 8.00 -2.39 -0.02 1.34 15 23 H 0.06 2.02 6.86 -2.38 -0.02 2.00 15 24 H 0.10 2.50 7.77 -2.39 -0.02 2.48 15 25 H 0.04 2.00 5.53 -2.39 -0.01 1.99 15 26 H 0.04 1.53 6.55 -2.38 -0.02 1.51 15 27 H 0.25 15.89 8.73 -92.71 -0.81 15.08 15 28 H 0.05 1.68 8.14 -2.38 -0.02 1.66 15 29 H 0.05 1.89 7.85 -2.39 -0.02 1.87 15 Total: -1.00 -63.48 254.61 4.52 -58.96 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: 0.88 Total: -0.84 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 2.81 Total: -16.85 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -0.89 Total: -85.98 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 1.85 Total: 51.56 kcal Atomic # 17 Polarization: -6.71 SS G_CDS: -0.14 Total: -6.85 kcal Total: -63.48 4.52 -58.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306749364.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.323 kcal (2) G-P(sol) polarization free energy of solvation -63.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds