Wall clock time and date at job start Thu Apr 9 2020 12:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47502 * 2 1 4 4 C 1.53001 * 109.47429 * 239.99739 * 2 1 3 5 5 C 1.53005 * 109.46927 * 119.99849 * 2 1 3 6 6 C 1.53007 * 109.46988 * 59.99845 * 5 2 1 7 7 N 1.46496 * 109.46773 * 180.02562 * 6 5 2 8 8 C 1.38825 * 119.99721 * 180.02562 * 7 6 5 9 9 C 1.39797 * 119.58412 * 359.97438 * 8 7 6 10 10 C 1.38590 * 119.48864 * 180.02562 * 9 8 7 11 11 C 1.38385 * 118.68645 * 0.02562 * 10 9 8 12 12 C 1.40563 * 119.14613 * 359.97438 * 11 10 9 13 13 C 1.41313 * 119.78156 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00203 * 6.43306 * 13 12 11 15 15 C 1.40023 * 119.99737 * 186.43292 * 13 12 11 16 16 N 1.30750 * 120.00001 * 176.32459 * 15 13 12 17 17 Si 1.86806 * 119.99972 * 356.05345 * 15 13 12 18 18 H 1.48501 * 109.46911 * 180.27289 * 17 15 13 19 19 H 1.48498 * 109.46717 * 300.27163 * 17 15 13 20 20 H 1.48497 * 109.47277 * 60.27102 * 17 15 13 21 21 N 1.31958 * 119.58381 * 180.30058 * 8 7 6 22 22 H 1.08996 * 109.47306 * 300.00930 * 1 2 3 23 23 H 1.09006 * 109.46824 * 60.00133 * 1 2 3 24 24 H 1.09001 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47158 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47253 * 299.99775 * 3 2 1 27 27 H 1.08998 * 109.47149 * 59.99868 * 3 2 1 28 28 H 1.09000 * 109.46674 * 300.00392 * 4 2 1 29 29 H 1.08993 * 109.47162 * 60.00140 * 4 2 1 30 30 H 1.09001 * 109.47398 * 180.02562 * 4 2 1 31 31 H 1.09005 * 109.47122 * 300.00159 * 5 2 1 32 32 H 1.09001 * 109.47302 * 179.97438 * 5 2 1 33 33 H 1.08998 * 109.47156 * 59.99939 * 6 5 2 34 34 H 1.09001 * 109.47069 * 300.00106 * 6 5 2 35 35 H 0.97000 * 120.00758 * 0.02562 * 7 6 5 36 36 H 1.08002 * 120.25638 * 0.04867 * 9 8 7 37 37 H 1.08007 * 120.65934 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.42947 * 180.02562 * 11 10 9 39 39 H 0.96993 * 119.99763 * 354.92649 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5298 -2.1638 1.2493 7 7 2.0176 -2.8541 2.4458 8 6 1.6825 -4.1833 2.6653 9 6 0.8787 -4.8545 1.7392 10 6 0.5449 -6.1812 1.9606 11 6 1.0211 -6.8047 3.1005 12 6 1.8253 -6.0762 3.9941 13 6 2.3193 -6.6998 5.1620 14 1 2.1669 -7.7579 5.3149 15 6 3.0063 -5.9456 6.1211 16 7 3.4005 -6.5066 7.2344 17 14 3.3664 -4.1397 5.8067 18 1 4.1051 -3.5735 6.9639 19 1 4.1916 -4.0060 4.5793 20 1 2.0890 -3.4042 5.6270 21 7 2.1215 -4.7955 3.7488 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6766 -1.7489 -1.2491 29 1 1.6768 -0.2075 -2.1392 30 1 3.1300 -0.7217 -1.2490 31 1 1.6765 -0.2074 2.1393 32 1 3.1299 -0.7217 1.2491 33 1 1.8931 -2.6776 0.3594 34 1 0.4398 -2.1637 1.2493 35 1 2.5747 -2.3826 3.0847 36 1 0.5208 -4.3431 0.8578 37 1 -0.0753 -6.7178 1.2577 38 1 0.7787 -7.8379 3.3007 39 1 3.1537 -7.4242 7.4289 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309711855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:13 Heat of formation + Delta-G solvation = -5.253566 kcal Electronic energy + Delta-G solvation = -17982.334993 eV Core-core repulsion = 15309.115834 eV Total energy + Delta-G solvation = -2673.219159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.94497 -38.07338 -35.03245 -33.42610 -31.13070 -30.13718 -27.76031 -27.41312 -27.36324 -25.26451 -23.09613 -21.81466 -20.22657 -18.79917 -18.25424 -16.49780 -15.66602 -15.19310 -14.86715 -14.38618 -14.28227 -14.17541 -13.67740 -13.26257 -12.94788 -12.86609 -12.42946 -12.16600 -12.08825 -11.81945 -11.77511 -11.69142 -11.42373 -10.81697 -10.79288 -10.61280 -10.54557 -10.48729 -10.20439 -9.54808 -9.45596 -8.91180 -8.41910 -7.64902 -7.16316 -6.81791 -4.72399 2.72467 2.87494 3.63083 3.74968 3.85549 4.11050 4.50213 4.65242 4.67273 4.73038 4.73648 5.24711 5.27184 5.38594 5.50761 5.53397 5.63844 5.64260 5.65818 5.75386 5.82851 5.89881 5.94590 5.98460 6.01278 6.12419 6.29057 6.32866 6.35347 6.54340 6.66422 6.68095 7.30524 7.49279 7.52636 7.65642 7.94304 8.07102 8.34990 8.52644 8.78702 9.64258 10.06977 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029047 B = 0.005741 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.729467 B = 4875.861067 C = 5636.748777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.123 4.123 6 C 0.135 3.865 7 N -0.742 5.742 8 C 0.442 3.558 9 C -0.365 4.365 10 C -0.017 4.017 11 C -0.307 4.307 12 C 0.287 3.713 13 C -0.477 4.477 14 H 0.082 0.918 15 C 0.044 3.956 16 N -0.809 5.809 17 Si 1.163 2.837 18 H -0.339 1.339 19 H -0.291 1.291 20 H -0.291 1.291 21 N -0.621 5.621 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.393 0.607 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 12.495 -12.850 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.065 4.065 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.161 4.161 6 C 0.010 3.990 7 N -0.378 5.378 8 C 0.205 3.795 9 C -0.391 4.391 10 C -0.041 4.041 11 C -0.330 4.330 12 C 0.163 3.837 13 C -0.509 4.509 14 H 0.100 0.900 15 C -0.177 4.177 16 N -0.431 5.431 17 Si 1.000 3.000 18 H -0.273 1.273 19 H -0.219 1.219 20 H -0.219 1.219 21 N -0.351 5.351 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.227 0.773 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.110 14.085 -11.770 18.476 hybrid contribution -1.174 -1.957 -1.004 2.493 sum -3.284 12.128 -12.774 17.918 Atomic orbital electron populations 1.21964 0.94503 1.02300 1.01572 1.20460 0.95789 0.95297 0.94980 1.21865 1.00988 0.95295 1.01634 1.21964 1.01092 1.00660 0.96619 1.21853 1.01244 0.95021 0.97942 1.21316 0.98500 0.91198 0.87958 1.44321 1.58294 1.09458 1.25698 1.18079 0.88337 0.83911 0.89212 1.20455 1.16848 0.97172 1.04636 1.20703 0.94780 0.93564 0.95025 1.21383 1.11224 1.00624 0.99778 1.18258 0.87568 0.85968 0.91882 1.20752 1.30930 0.97464 1.01742 0.90037 1.27818 0.89573 1.09284 0.90998 1.70660 1.33087 1.16236 1.23095 0.81629 0.76477 0.70391 0.71459 1.27327 1.21907 1.21930 1.65762 1.34812 1.12408 1.22074 0.92599 0.92843 0.92013 0.92653 0.92718 0.92653 0.92018 0.92837 0.92606 0.91300 0.91303 0.92418 0.92431 0.77253 0.88244 0.88221 0.88156 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.12 37.16 0.30 -1.04 16 2 C -0.06 -0.60 0.80 -154.51 -0.12 -0.73 16 3 C -0.14 -1.16 8.47 37.16 0.31 -0.84 16 4 C -0.15 -1.33 8.12 37.16 0.30 -1.03 16 5 C -0.12 -1.39 4.38 -26.72 -0.12 -1.50 16 6 C 0.14 1.93 4.18 -4.04 -0.02 1.91 16 7 N -0.74 -14.05 5.72 -60.39 -0.35 -14.40 16 8 C 0.44 10.23 7.65 -155.32 -1.19 9.05 16 9 C -0.37 -7.90 9.34 -38.87 -0.36 -8.26 16 10 C -0.02 -0.37 10.15 -39.40 -0.40 -0.77 16 11 C -0.31 -7.57 9.83 -38.65 -0.38 -7.95 16 12 C 0.29 7.83 6.42 -85.00 -0.55 7.28 16 13 C -0.48 -13.49 9.57 -37.74 -0.36 -13.86 16 14 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 15 C 0.04 1.24 5.52 -17.34 -0.10 1.15 16 16 N -0.81 -22.72 13.65 55.55 0.76 -21.96 16 17 Si 1.16 29.55 25.45 -169.99 -4.33 25.22 16 18 H -0.34 -8.50 7.11 56.52 0.40 -8.09 16 19 H -0.29 -7.36 6.97 56.52 0.39 -6.96 16 20 H -0.29 -7.40 6.91 56.52 0.39 -7.01 16 21 N -0.62 -16.36 4.55 -10.33 -0.05 -16.41 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.82 6.20 -51.93 -0.32 0.50 16 34 H 0.06 0.82 6.21 -51.93 -0.32 0.50 16 35 H 0.39 7.31 8.59 -40.82 -0.35 6.96 16 36 H 0.10 1.87 6.68 -52.49 -0.35 1.52 16 37 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.28 7.56 8.72 -40.82 -0.36 7.21 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -29.97 309.64 -8.23 -38.20 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.26 Total: 1.27 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.67 Total: -16.59 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.37 Total: -52.76 kcal Atomic # 14 Polarization: 29.55 SS G_CDS: -4.33 Total: 25.22 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.97 -8.23 -38.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309711855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.944 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds