Wall clock time and date at job start Thu Apr 9 2020 12:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47099 * 2 1 4 4 C 1.38230 * 120.41723 * 266.04473 * 3 2 1 5 5 N 1.31846 * 120.76110 * 180.02562 * 4 3 2 6 6 C 1.31888 * 121.73170 * 359.97438 * 5 4 3 7 7 C 1.38182 * 120.76143 * 359.73990 * 6 5 4 8 8 C 1.38623 * 120.41950 * 86.06778 * 3 2 1 9 9 C 1.50694 * 120.79130 * 359.95816 * 8 3 2 10 10 H 1.08994 * 109.47096 * 317.28384 * 9 8 3 11 11 C 1.53000 * 109.47106 * 197.28569 * 9 8 3 12 12 N 1.46898 * 109.47271 * 77.28656 * 9 8 3 13 13 C 1.46903 * 111.00054 * 205.00051 * 12 9 8 14 14 C 1.52997 * 109.47229 * 179.97438 * 13 12 9 15 15 C 1.50705 * 109.47161 * 180.02562 * 14 13 12 16 16 H 1.07990 * 119.99827 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99928 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46868 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47452 * 119.99460 * 19 17 15 22 22 H 1.48504 * 109.46808 * 240.00166 * 19 17 15 23 23 H 1.08996 * 109.47384 * 55.06481 * 1 2 3 24 24 H 1.09007 * 109.47310 * 175.06234 * 1 2 3 25 25 H 1.09000 * 109.47487 * 295.06097 * 1 2 3 26 26 H 1.08999 * 109.47318 * 239.99379 * 2 1 3 27 27 H 1.09001 * 109.46868 * 120.00088 * 2 1 3 28 28 H 1.08000 * 119.61511 * 0.03004 * 4 3 2 29 29 H 1.07992 * 119.61915 * 180.02562 * 6 5 4 30 30 H 1.07993 * 120.42045 * 180.25962 * 7 6 5 31 31 H 1.09003 * 109.47270 * 174.42393 * 11 9 8 32 32 H 1.09001 * 109.47025 * 294.42256 * 11 9 8 33 33 H 1.08997 * 109.47181 * 54.42243 * 11 9 8 34 34 H 1.00901 * 111.00409 * 328.95041 * 12 9 8 35 35 H 1.08999 * 109.47288 * 59.99769 * 13 12 9 36 36 H 1.08997 * 109.46991 * 299.99729 * 13 12 9 37 37 H 1.09001 * 109.47544 * 299.99885 * 14 13 12 38 38 H 1.09003 * 109.47527 * 59.99774 * 14 13 12 39 39 H 0.96995 * 119.99843 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3431 2.0532 -1.1892 5 7 2.7836 3.2959 -1.1971 6 6 2.9444 3.9819 -0.0822 7 6 2.6486 3.4174 1.1439 8 6 2.1890 2.1099 1.1926 9 6 1.8608 1.4562 2.5101 10 1 0.9288 0.8987 2.4169 11 6 1.7066 2.5308 3.5882 12 7 2.9449 0.5385 2.8849 13 6 2.4543 -0.5186 3.7793 14 6 3.6090 -1.4527 4.1464 15 6 3.1055 -2.5375 5.0635 16 1 2.0661 -2.5583 5.3555 17 6 3.9723 -3.5028 5.5304 18 7 5.2383 -3.4772 5.1751 19 14 3.3481 -4.8478 6.6664 20 1 1.8964 -4.6540 6.9121 21 1 3.5710 -6.1729 6.0342 22 1 4.0806 -4.7854 7.9567 23 1 -0.3634 0.5885 -0.8424 24 1 -0.3634 -1.0239 -0.0885 25 1 -0.3634 0.4353 0.9309 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2237 1.5233 -2.1226 29 1 3.3070 4.9981 -0.1283 30 1 2.7784 3.9856 2.0531 31 1 1.3728 2.0683 4.5171 32 1 2.6659 3.0221 3.7513 33 1 0.9715 3.2675 3.2644 34 1 3.3844 0.1445 2.0666 35 1 1.6733 -1.0877 3.2750 36 1 2.0484 -0.0686 4.6853 37 1 4.0145 -1.9028 3.2403 38 1 4.3904 -0.8839 4.6506 39 1 5.8481 -4.1560 5.5039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309971544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:22 Heat of formation + Delta-G solvation = 12.273011 kcal Electronic energy + Delta-G solvation = -17935.692352 eV Core-core repulsion = 15263.233203 eV Total energy + Delta-G solvation = -2672.459149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56718 -37.03362 -34.51518 -33.60304 -32.19514 -30.06510 -29.55092 -28.08872 -24.95027 -24.26602 -23.52971 -21.39891 -20.55506 -20.44773 -16.79333 -16.70915 -16.30903 -15.43085 -15.16326 -14.59197 -14.45328 -13.98810 -13.80010 -13.65256 -13.37632 -12.80635 -12.58786 -12.34698 -12.21319 -11.96646 -11.67351 -11.36007 -11.21770 -11.09582 -10.90410 -10.84218 -10.54006 -10.04034 -9.66843 -9.43140 -9.35013 -9.13621 -8.94065 -8.38325 -7.90173 -6.02332 -4.05206 1.11207 1.24353 3.29299 3.36860 3.40469 3.75812 4.40156 4.41822 4.55791 4.69370 4.76684 4.83389 4.89769 5.24818 5.26794 5.29934 5.33847 5.42584 5.47465 5.61371 5.75937 5.82976 5.85071 5.91003 5.95097 6.12872 6.20332 6.26472 6.28559 6.32415 6.51857 6.70524 6.93105 7.40271 7.67575 7.76184 7.88432 7.95633 8.04139 8.39712 9.02217 9.58904 11.09083 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031109 B = 0.004599 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.836852 B = 6087.244548 C = 6317.414793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.128 4.128 4 C 0.098 3.902 5 N -0.488 5.488 6 C 0.087 3.913 7 C -0.155 4.155 8 C -0.033 4.033 9 C 0.116 3.884 10 H 0.056 0.944 11 C -0.141 4.141 12 N -0.678 5.678 13 C 0.065 3.935 14 C 0.025 3.975 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.139 0.861 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.337 0.663 35 H 0.017 0.983 36 H 0.060 0.940 37 H 0.013 0.987 38 H 0.025 0.975 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.210 11.768 -10.055 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.131 4.131 4 C -0.059 4.059 5 N -0.197 5.197 6 C -0.069 4.069 7 C -0.175 4.175 8 C -0.041 4.041 9 C 0.007 3.993 10 H 0.074 0.926 11 C -0.198 4.198 12 N -0.311 5.311 13 C -0.063 4.063 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.169 0.831 29 H 0.170 0.830 30 H 0.156 0.844 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.044 0.956 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.627 12.470 -10.299 17.882 hybrid contribution -0.858 -1.739 0.850 2.118 sum -8.485 10.731 -9.449 16.626 Atomic orbital electron populations 1.21730 0.94478 1.02075 1.01960 1.20568 0.96435 0.91893 1.03788 1.20843 1.00698 0.97749 0.93768 1.22583 0.95302 0.90865 0.97199 1.67629 1.12609 1.07982 1.31461 1.22702 0.96691 0.99708 0.87830 1.22146 1.00016 0.95681 0.99703 1.20369 0.95050 0.93931 0.94789 1.20498 0.94447 0.94465 0.89884 0.92640 1.21862 1.01717 0.97751 0.98508 1.60823 1.28088 1.21360 1.20809 1.22255 0.98671 0.90746 0.94581 1.19070 0.92849 0.92754 0.96534 1.21192 0.95446 1.10515 1.28870 0.92702 1.25001 0.94851 0.97955 0.96501 1.69983 1.03348 1.34934 1.44903 0.86540 0.78966 0.81836 0.80677 1.19763 1.21016 1.20960 0.92665 0.91945 0.92589 0.90473 0.90344 0.83110 0.83011 0.84359 0.92060 0.91528 0.92917 0.84380 0.96520 0.92103 0.96859 0.95615 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.82 37.16 0.36 -1.14 16 2 C -0.09 -1.03 5.41 -27.88 -0.15 -1.18 16 3 C -0.13 -1.61 5.00 -104.48 -0.52 -2.13 16 4 C 0.10 1.20 10.85 -17.55 -0.19 1.01 16 5 N -0.49 -6.45 10.36 -13.26 -0.14 -6.59 16 6 C 0.09 1.02 11.18 -17.55 -0.20 0.83 16 7 C -0.16 -1.86 9.12 -39.44 -0.36 -2.22 16 8 C -0.03 -0.43 5.12 -104.32 -0.53 -0.97 16 9 C 0.12 1.65 2.06 -68.87 -0.14 1.51 16 10 H 0.06 0.79 5.90 -51.93 -0.31 0.49 16 11 C -0.14 -1.80 8.15 37.16 0.30 -1.50 16 12 N -0.68 -11.79 6.01 -107.96 -0.65 -12.44 16 13 C 0.07 1.33 5.42 -3.82 -0.02 1.31 16 14 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.06 0.61 6.83 -51.93 -0.35 0.26 16 26 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.08 1.06 5.88 -51.93 -0.31 0.76 16 28 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.14 1.44 6.26 -52.49 -0.33 1.11 16 31 H 0.06 0.83 7.60 -51.93 -0.39 0.43 16 32 H 0.07 0.86 7.22 -51.93 -0.37 0.48 16 33 H 0.05 0.57 7.99 -51.93 -0.42 0.15 16 34 H 0.34 5.91 7.03 -39.29 -0.28 5.63 16 35 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 36 H 0.06 1.24 7.55 -51.93 -0.39 0.85 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 315.56 15.07 4.76 4.76 Total: -1.00 -30.53 315.56 -8.38 -38.91 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.06 Total: 2.29 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -2.01 Total: -17.35 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.05 Total: -45.07 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.53 -8.38 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309971544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.182 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds