Wall clock time and date at job start Thu Apr 9 2020 12:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47099 * 2 1 4 4 C 1.38230 * 120.41723 * 266.04473 * 3 2 1 5 5 N 1.31846 * 120.76110 * 180.02562 * 4 3 2 6 6 C 1.31888 * 121.73170 * 359.97438 * 5 4 3 7 7 C 1.38182 * 120.76143 * 359.73990 * 6 5 4 8 8 C 1.38623 * 120.41950 * 86.06778 * 3 2 1 9 9 C 1.50694 * 120.79130 * 359.95816 * 8 3 2 10 10 H 1.08994 * 109.47096 * 317.28384 * 9 8 3 11 11 C 1.53000 * 109.47106 * 197.28569 * 9 8 3 12 12 N 1.46898 * 109.47271 * 77.28656 * 9 8 3 13 13 C 1.46903 * 111.00054 * 205.00051 * 12 9 8 14 14 C 1.52997 * 109.47229 * 179.97438 * 13 12 9 15 15 C 1.50705 * 109.47161 * 180.02562 * 14 13 12 16 16 H 1.07990 * 119.99827 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99928 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46868 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47452 * 119.99460 * 19 17 15 22 22 H 1.48504 * 109.46808 * 240.00166 * 19 17 15 23 23 H 1.08996 * 109.47384 * 55.06481 * 1 2 3 24 24 H 1.09007 * 109.47310 * 175.06234 * 1 2 3 25 25 H 1.09000 * 109.47487 * 295.06097 * 1 2 3 26 26 H 1.08999 * 109.47318 * 239.99379 * 2 1 3 27 27 H 1.09001 * 109.46868 * 120.00088 * 2 1 3 28 28 H 1.08000 * 119.61511 * 0.03004 * 4 3 2 29 29 H 1.07992 * 119.61915 * 180.02562 * 6 5 4 30 30 H 1.07993 * 120.42045 * 180.25962 * 7 6 5 31 31 H 1.09003 * 109.47270 * 174.42393 * 11 9 8 32 32 H 1.09001 * 109.47025 * 294.42256 * 11 9 8 33 33 H 1.08997 * 109.47181 * 54.42243 * 11 9 8 34 34 H 1.00901 * 111.00409 * 328.95041 * 12 9 8 35 35 H 1.08999 * 109.47288 * 59.99769 * 13 12 9 36 36 H 1.08997 * 109.46991 * 299.99729 * 13 12 9 37 37 H 1.09001 * 109.47544 * 299.99885 * 14 13 12 38 38 H 1.09003 * 109.47527 * 59.99774 * 14 13 12 39 39 H 0.96995 * 119.99843 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3431 2.0532 -1.1892 5 7 2.7836 3.2959 -1.1971 6 6 2.9444 3.9819 -0.0822 7 6 2.6486 3.4174 1.1439 8 6 2.1890 2.1099 1.1926 9 6 1.8608 1.4562 2.5101 10 1 0.9288 0.8987 2.4169 11 6 1.7066 2.5308 3.5882 12 7 2.9449 0.5385 2.8849 13 6 2.4543 -0.5186 3.7793 14 6 3.6090 -1.4527 4.1464 15 6 3.1055 -2.5375 5.0635 16 1 2.0661 -2.5583 5.3555 17 6 3.9723 -3.5028 5.5304 18 7 5.2383 -3.4772 5.1751 19 14 3.3481 -4.8478 6.6664 20 1 1.8964 -4.6540 6.9121 21 1 3.5710 -6.1729 6.0342 22 1 4.0806 -4.7854 7.9567 23 1 -0.3634 0.5885 -0.8424 24 1 -0.3634 -1.0239 -0.0885 25 1 -0.3634 0.4353 0.9309 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2237 1.5233 -2.1226 29 1 3.3070 4.9981 -0.1283 30 1 2.7784 3.9856 2.0531 31 1 1.3728 2.0683 4.5171 32 1 2.6659 3.0221 3.7513 33 1 0.9715 3.2675 3.2644 34 1 3.3844 0.1445 2.0666 35 1 1.6733 -1.0877 3.2750 36 1 2.0484 -0.0686 4.6853 37 1 4.0145 -1.9028 3.2403 38 1 4.3904 -0.8839 4.6506 39 1 5.8481 -4.1560 5.5039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309971544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:21 Heat of formation + Delta-G solvation = -6.417271 kcal Electronic energy + Delta-G solvation = -17936.502824 eV Core-core repulsion = 15263.233203 eV Total energy + Delta-G solvation = -2673.269621 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53295 -38.29844 -35.77421 -35.14487 -33.78652 -31.38584 -30.53649 -29.59638 -26.50019 -25.22342 -24.94007 -22.61076 -22.11305 -21.54530 -18.52526 -17.79575 -17.70926 -16.59022 -16.42142 -16.24955 -15.83294 -15.03492 -14.89603 -14.71535 -14.61063 -14.34242 -13.92664 -13.62811 -13.40617 -13.12802 -12.92861 -12.88454 -12.73509 -12.40572 -12.34587 -12.12859 -12.00489 -11.67319 -11.40571 -11.28398 -10.59424 -10.53670 -10.36428 -9.86202 -9.31585 -8.20743 -6.32233 0.19221 0.26254 1.40497 1.40934 1.54062 2.40204 2.80072 3.13175 3.39218 3.50733 3.61984 3.77022 3.91206 3.94883 4.24438 4.37631 4.37913 4.41499 4.51352 4.54689 4.61617 4.73038 4.80345 4.90537 4.93426 4.98762 5.01042 5.05794 5.23251 5.27780 5.29902 5.44801 5.51380 5.65592 5.77537 5.79621 6.11151 6.24152 6.43831 6.85278 7.03105 7.37409 8.91651 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031109 B = 0.004599 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.836852 B = 6087.244548 C = 6317.414793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.091 3.909 5 N -0.506 5.506 6 C 0.083 3.917 7 C -0.156 4.156 8 C -0.048 4.048 9 C 0.120 3.880 10 H 0.056 0.944 11 C -0.138 4.138 12 N -0.683 5.683 13 C 0.086 3.914 14 C 0.033 3.967 15 C -0.542 4.542 16 H 0.061 0.939 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.279 1.279 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.171 0.829 29 H 0.180 0.820 30 H 0.154 0.846 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.335 0.665 35 H 0.021 0.979 36 H 0.061 0.939 37 H -0.011 1.011 38 H -0.007 1.007 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.506 12.233 -10.235 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.135 4.135 4 C -0.065 4.065 5 N -0.215 5.215 6 C -0.073 4.073 7 C -0.176 4.176 8 C -0.057 4.057 9 C 0.011 3.989 10 H 0.073 0.927 11 C -0.196 4.196 12 N -0.315 5.315 13 C -0.042 4.042 14 C -0.005 4.005 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.196 4.196 18 N -0.572 5.572 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.204 1.204 22 H -0.204 1.204 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.188 0.812 29 H 0.197 0.803 30 H 0.172 0.828 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.007 0.993 38 H 0.012 0.988 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.939 12.953 -10.486 18.911 hybrid contribution -0.422 -1.824 0.849 2.056 sum -9.362 11.128 -9.637 17.446 Atomic orbital electron populations 1.21702 0.93458 1.02640 1.02017 1.20560 0.97301 0.91417 1.03273 1.20953 1.00674 0.98030 0.93825 1.22912 0.94892 0.90842 0.97890 1.67683 1.13087 1.08468 1.32229 1.23163 0.96013 1.00775 0.87323 1.22350 0.99392 0.95313 1.00591 1.20363 0.96294 0.94693 0.94328 1.20504 0.93184 0.94055 0.91164 0.92660 1.21855 1.02375 0.97721 0.97601 1.60746 1.29518 1.20555 1.20662 1.21834 0.96351 0.90648 0.95386 1.18910 0.93742 0.93032 0.94800 1.21623 0.95889 1.11256 1.29260 0.92040 1.25962 0.94940 1.00600 0.98140 1.70118 1.04775 1.36076 1.46273 0.85386 0.78902 0.78398 0.78273 1.18452 1.20373 1.20445 0.91499 0.91332 0.93384 0.89153 0.92643 0.81155 0.80328 0.82837 0.92986 0.91645 0.90473 0.84663 0.96069 0.92016 0.99259 0.98845 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.82 71.98 0.71 -2.04 16 2 C -0.09 -1.96 5.41 29.85 0.16 -1.80 16 3 C -0.13 -3.17 5.00 -19.77 -0.10 -3.27 16 4 C 0.09 2.10 10.85 84.69 0.92 3.02 16 5 N -0.51 -12.48 10.36 -195.85 -2.03 -14.51 16 6 C 0.08 1.79 11.18 84.67 0.95 2.74 16 7 C -0.16 -3.47 9.12 22.36 0.20 -3.27 16 8 C -0.05 -1.22 5.12 -19.67 -0.10 -1.32 16 9 C 0.12 3.30 2.06 44.17 0.09 3.39 16 10 H 0.06 1.54 5.90 -2.39 -0.01 1.53 16 11 C -0.14 -3.34 8.15 71.98 0.59 -2.75 16 12 N -0.68 -23.91 6.01 -495.47 -2.98 -26.89 16 13 C 0.09 3.56 5.42 86.30 0.47 4.03 16 14 C 0.03 1.73 5.23 29.85 0.16 1.89 16 15 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 16 H 0.06 3.32 7.74 -2.92 -0.02 3.30 16 17 C 0.00 0.09 5.46 84.66 0.46 0.55 16 18 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 19 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.23 8.14 -2.38 -0.02 1.22 16 25 H 0.05 1.00 6.83 -2.39 -0.02 0.98 16 26 H 0.09 1.75 8.07 -2.39 -0.02 1.73 16 27 H 0.05 1.51 5.88 -2.39 -0.01 1.49 16 28 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 29 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.15 2.85 6.26 -2.91 -0.02 2.83 16 31 H 0.05 1.35 7.60 -2.39 -0.02 1.33 16 32 H 0.06 1.60 7.22 -2.39 -0.02 1.58 16 33 H 0.08 1.49 7.99 -2.39 -0.02 1.47 16 34 H 0.33 11.99 7.03 -89.69 -0.63 11.36 16 35 H 0.02 0.85 8.06 -2.39 -0.02 0.83 16 36 H 0.06 2.52 7.55 -2.39 -0.02 2.50 16 37 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -65.48 315.56 2.44 -63.05 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.40 Total: 18.32 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 4.73 Total: -29.32 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -4.72 Total: -98.07 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -65.48 2.44 -63.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309971544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.629 kcal (2) G-P(sol) polarization free energy of solvation -65.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds