Wall clock time and date at job start Thu Apr 9 2020 12:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47344 * 2 1 4 4 C 1.38677 * 120.41537 * 265.26323 * 3 2 1 5 5 C 1.38625 * 118.42126 * 180.22222 * 4 3 2 6 6 C 1.38223 * 119.15978 * 359.46985 * 5 4 3 7 7 N 1.31856 * 120.76567 * 0.30777 * 6 5 4 8 8 C 1.31884 * 121.72562 * 359.97275 * 7 6 5 9 9 C 1.50697 * 119.62216 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47618 * 164.99918 * 9 8 7 11 11 C 1.53003 * 109.46978 * 285.00179 * 9 8 7 12 12 N 1.46911 * 109.46959 * 44.99724 * 9 8 7 13 13 C 1.46899 * 110.99554 * 155.00472 * 12 9 8 14 14 C 1.53003 * 109.46888 * 180.02562 * 13 12 9 15 15 C 1.50693 * 109.47352 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99787 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00243 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99995 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00392 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47029 * 89.99551 * 19 17 15 21 21 H 1.48496 * 109.47396 * 210.00270 * 19 17 15 22 22 H 1.48507 * 109.46844 * 330.00395 * 19 17 15 23 23 H 1.08997 * 109.46905 * 60.00097 * 1 2 3 24 24 H 1.08994 * 109.46899 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47118 * 300.00590 * 1 2 3 26 26 H 1.08997 * 109.47392 * 239.99657 * 2 1 3 27 27 H 1.08999 * 109.47021 * 119.99363 * 2 1 3 28 28 H 1.08003 * 120.78603 * 359.97006 * 4 3 2 29 29 H 1.08002 * 120.42343 * 179.75479 * 5 4 3 30 30 H 1.08005 * 119.61951 * 180.28273 * 6 5 4 31 31 H 1.09006 * 109.47137 * 59.99697 * 11 9 8 32 32 H 1.08998 * 109.46927 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.47237 * 299.99675 * 11 9 8 34 34 H 1.00893 * 110.99623 * 31.04842 * 12 9 8 35 35 H 1.09000 * 109.47369 * 299.99472 * 13 12 9 36 36 H 1.08994 * 109.47708 * 60.00113 * 13 12 9 37 37 H 1.09005 * 109.47103 * 299.99973 * 14 13 12 38 38 H 1.09002 * 109.47327 * 59.99690 * 14 13 12 39 39 H 0.97001 * 120.00017 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3596 2.0498 -1.1918 5 6 2.8221 3.3557 -1.1434 6 6 2.9305 3.9868 0.0816 7 7 2.6058 3.3591 1.1948 8 6 2.1677 2.1151 1.1870 9 6 1.8095 1.4435 2.4876 10 1 1.2281 0.5443 2.2841 11 6 3.0894 1.0649 3.2355 12 7 1.0150 2.3643 3.3117 13 6 0.1684 1.6262 4.2585 14 6 -0.6425 2.6167 5.0967 15 6 -1.5114 1.8596 6.0676 16 1 -1.4880 0.7800 6.0848 17 6 -2.3364 2.5452 6.9339 18 7 -2.3653 3.8598 6.9125 19 14 -3.4141 1.6067 8.1370 20 1 -2.6715 1.3949 9.4054 21 1 -4.6475 2.3874 8.4097 22 1 -3.7798 0.2916 7.5521 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 2.2603 1.5331 -2.1350 29 1 3.0900 3.8751 -2.0516 30 1 3.2857 5.0057 0.1276 31 1 3.6709 1.9642 3.4390 32 1 2.8303 0.5795 4.1764 33 1 3.6790 0.3817 2.6241 34 1 0.4611 2.9794 2.7348 35 1 -0.5108 0.9756 3.7078 36 1 0.7967 1.0238 4.9145 37 1 0.0364 3.2677 5.6475 38 1 -1.2709 3.2188 4.4405 39 1 -2.9454 4.3422 7.5223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309980393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:25 Heat of formation + Delta-G solvation = 14.861877 kcal Electronic energy + Delta-G solvation = -17853.634726 eV Core-core repulsion = 15181.287838 eV Total energy + Delta-G solvation = -2672.346888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.54208 -36.54977 -34.81522 -33.37755 -31.99388 -30.63611 -29.24407 -27.91961 -24.76312 -24.32920 -23.53781 -21.47996 -20.49447 -20.31076 -16.93299 -16.64239 -16.12489 -15.50113 -14.74149 -14.47218 -14.31813 -14.20236 -13.77112 -13.57480 -13.11126 -12.82283 -12.56041 -12.31930 -12.18333 -11.94406 -11.63819 -11.45627 -11.22165 -10.99396 -10.93834 -10.67116 -10.50164 -9.89656 -9.76696 -9.41062 -9.22224 -9.08186 -8.79083 -8.30559 -7.68777 -5.94953 -3.97528 1.06737 1.27921 3.34975 3.40839 3.43814 3.77439 4.31000 4.44510 4.53443 4.68688 4.71083 4.89772 5.07319 5.18422 5.21962 5.32398 5.40762 5.41505 5.56208 5.65543 5.74028 5.77318 5.82811 5.98531 6.09266 6.12738 6.18439 6.23314 6.38481 6.45655 6.57027 6.71765 7.05373 7.56267 7.79658 7.88705 8.02137 8.14447 8.16344 8.48913 9.09993 9.65887 11.16479 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030547 B = 0.004535 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.407591 B = 6173.212132 C = 6478.385150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.132 4.132 4 C -0.078 4.078 5 C -0.179 4.179 6 C 0.093 3.907 7 N -0.453 5.453 8 C 0.135 3.865 9 C 0.129 3.871 10 H 0.058 0.942 11 C -0.133 4.133 12 N -0.671 5.671 13 C 0.065 3.935 14 C 0.026 3.974 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.154 0.846 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.338 0.662 35 H 0.013 0.987 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.012 0.988 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.115 -5.569 -17.610 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.134 4.134 4 C -0.104 4.104 5 C -0.199 4.199 6 C -0.065 4.065 7 N -0.161 5.161 8 C -0.003 4.003 9 C 0.018 3.982 10 H 0.076 0.924 11 C -0.191 4.191 12 N -0.303 5.303 13 C -0.063 4.063 14 C -0.011 4.011 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.200 1.200 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.171 0.829 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.156 0.844 35 H 0.031 0.969 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.031 0.969 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.608 -4.872 -16.259 20.015 hybrid contribution -1.371 -1.074 -0.846 1.936 sum 9.236 -5.945 -17.105 20.328 Atomic orbital electron populations 1.21786 0.94278 1.02123 1.02501 1.20536 0.96531 0.91921 1.03085 1.20760 1.01044 0.97912 0.93691 1.21407 0.96503 0.94743 0.97746 1.22113 1.02242 0.95895 0.99643 1.22832 0.95990 0.99903 0.87729 1.67577 1.09019 1.08829 1.30638 1.21329 0.94389 0.90223 0.94391 1.20535 0.96159 0.93764 0.87713 0.92430 1.21741 0.96155 1.01423 0.99813 1.60575 1.29704 1.20116 1.19861 1.22243 0.93484 0.96853 0.93713 1.19052 0.93965 0.94075 0.94041 1.21176 1.23191 0.92978 1.18580 0.92796 1.25000 0.97124 0.94820 0.97402 1.69982 1.39151 1.06156 1.37926 0.86603 0.80049 0.79817 0.81560 1.20639 1.21262 1.19956 0.92639 0.92003 0.92128 0.90989 0.90299 0.85212 0.85132 0.82887 0.91444 0.91851 0.93531 0.84392 0.96878 0.92228 0.95533 0.96925 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.70 37.16 0.36 -1.20 16 2 C -0.08 -0.83 5.36 -27.88 -0.15 -0.98 16 3 C -0.13 -1.59 5.15 -104.48 -0.54 -2.13 16 4 C -0.08 -0.81 9.84 -39.28 -0.39 -1.19 16 5 C -0.18 -1.81 10.11 -39.44 -0.40 -2.21 16 6 C 0.09 1.14 11.18 -17.55 -0.20 0.94 16 7 N -0.45 -7.01 10.01 -9.47 -0.09 -7.11 16 8 C 0.14 1.99 5.39 -82.59 -0.45 1.54 16 9 C 0.13 2.03 2.47 -68.86 -0.17 1.86 16 10 H 0.06 0.86 4.74 -51.93 -0.25 0.62 16 11 C -0.13 -1.98 9.40 37.16 0.35 -1.63 16 12 N -0.67 -12.93 6.14 -107.95 -0.66 -13.60 16 13 C 0.07 1.41 5.42 -3.82 -0.02 1.39 16 14 C 0.03 0.70 5.23 -27.88 -0.15 0.56 16 15 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 16 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16 19 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.76 7.33 -51.93 -0.38 0.38 16 26 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 27 H 0.08 0.81 6.70 -51.93 -0.35 0.46 16 28 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.96 7.45 -51.93 -0.39 0.57 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.34 6.69 8.30 -39.30 -0.33 6.36 16 35 H 0.01 0.28 8.06 -51.93 -0.42 -0.14 16 36 H 0.06 1.28 7.43 -51.93 -0.39 0.90 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -31.91 321.29 -8.61 -40.53 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.26 Total: 1.93 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.15 Total: -16.80 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.02 Total: -47.41 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.91 -8.61 -40.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309980393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.387 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds