Wall clock time and date at job start Thu Apr 9 2020 12:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47344 * 2 1 4 4 C 1.38677 * 120.41537 * 265.26323 * 3 2 1 5 5 C 1.38625 * 118.42126 * 180.22222 * 4 3 2 6 6 C 1.38223 * 119.15978 * 359.46985 * 5 4 3 7 7 N 1.31856 * 120.76567 * 0.30777 * 6 5 4 8 8 C 1.31884 * 121.72562 * 359.97275 * 7 6 5 9 9 C 1.50697 * 119.62216 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47618 * 164.99918 * 9 8 7 11 11 C 1.53003 * 109.46978 * 285.00179 * 9 8 7 12 12 N 1.46911 * 109.46959 * 44.99724 * 9 8 7 13 13 C 1.46899 * 110.99554 * 155.00472 * 12 9 8 14 14 C 1.53003 * 109.46888 * 180.02562 * 13 12 9 15 15 C 1.50693 * 109.47352 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99787 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00243 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99995 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00392 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47029 * 89.99551 * 19 17 15 21 21 H 1.48496 * 109.47396 * 210.00270 * 19 17 15 22 22 H 1.48507 * 109.46844 * 330.00395 * 19 17 15 23 23 H 1.08997 * 109.46905 * 60.00097 * 1 2 3 24 24 H 1.08994 * 109.46899 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47118 * 300.00590 * 1 2 3 26 26 H 1.08997 * 109.47392 * 239.99657 * 2 1 3 27 27 H 1.08999 * 109.47021 * 119.99363 * 2 1 3 28 28 H 1.08003 * 120.78603 * 359.97006 * 4 3 2 29 29 H 1.08002 * 120.42343 * 179.75479 * 5 4 3 30 30 H 1.08005 * 119.61951 * 180.28273 * 6 5 4 31 31 H 1.09006 * 109.47137 * 59.99697 * 11 9 8 32 32 H 1.08998 * 109.46927 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.47237 * 299.99675 * 11 9 8 34 34 H 1.00893 * 110.99623 * 31.04842 * 12 9 8 35 35 H 1.09000 * 109.47369 * 299.99472 * 13 12 9 36 36 H 1.08994 * 109.47708 * 60.00113 * 13 12 9 37 37 H 1.09005 * 109.47103 * 299.99973 * 14 13 12 38 38 H 1.09002 * 109.47327 * 59.99690 * 14 13 12 39 39 H 0.97001 * 120.00017 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3596 2.0498 -1.1918 5 6 2.8221 3.3557 -1.1434 6 6 2.9305 3.9868 0.0816 7 7 2.6058 3.3591 1.1948 8 6 2.1677 2.1151 1.1870 9 6 1.8095 1.4435 2.4876 10 1 1.2281 0.5443 2.2841 11 6 3.0894 1.0649 3.2355 12 7 1.0150 2.3643 3.3117 13 6 0.1684 1.6262 4.2585 14 6 -0.6425 2.6167 5.0967 15 6 -1.5114 1.8596 6.0676 16 1 -1.4880 0.7800 6.0848 17 6 -2.3364 2.5452 6.9339 18 7 -2.3653 3.8598 6.9125 19 14 -3.4141 1.6067 8.1370 20 1 -2.6715 1.3949 9.4054 21 1 -4.6475 2.3874 8.4097 22 1 -3.7798 0.2916 7.5521 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 2.2603 1.5331 -2.1350 29 1 3.0900 3.8751 -2.0516 30 1 3.2857 5.0057 0.1276 31 1 3.6709 1.9642 3.4390 32 1 2.8303 0.5795 4.1764 33 1 3.6790 0.3817 2.6241 34 1 0.4611 2.9794 2.7348 35 1 -0.5108 0.9756 3.7078 36 1 0.7967 1.0238 4.9145 37 1 0.0364 3.2677 5.6475 38 1 -1.2709 3.2188 4.4405 39 1 -2.9454 4.3422 7.5223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309980393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:23 Heat of formation + Delta-G solvation = -5.727647 kcal Electronic energy + Delta-G solvation = -17854.527554 eV Core-core repulsion = 15181.287838 eV Total energy + Delta-G solvation = -2673.239716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.48776 -37.96512 -35.80368 -35.25064 -33.47123 -31.87546 -30.36782 -29.55912 -26.38167 -25.21313 -24.96777 -22.64466 -22.08530 -21.51417 -18.52907 -17.87603 -17.63647 -16.57168 -16.35390 -16.00036 -15.57287 -15.24628 -14.91171 -14.72415 -14.38337 -14.19105 -13.89235 -13.56580 -13.52479 -13.10230 -12.99240 -12.87447 -12.74931 -12.51391 -12.39762 -12.12983 -11.96421 -11.58126 -11.41314 -11.26918 -10.63074 -10.56655 -10.19891 -9.73127 -9.23484 -8.19677 -6.31952 0.16308 0.42078 1.40363 1.42777 1.53596 2.40875 2.84204 3.13542 3.25901 3.36165 3.71642 3.92108 4.03100 4.13915 4.31551 4.38242 4.41466 4.44933 4.51700 4.53612 4.62067 4.67574 4.81422 4.88672 4.97431 5.02787 5.04656 5.06370 5.23668 5.31275 5.35458 5.40876 5.45207 5.66167 5.78773 5.84389 6.14486 6.29272 6.48578 6.85321 7.18704 7.37500 8.92822 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030547 B = 0.004535 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.407591 B = 6173.212132 C = 6478.385150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.134 4.134 4 C -0.077 4.077 5 C -0.166 4.166 6 C 0.073 3.927 7 N -0.496 5.496 8 C 0.108 3.892 9 C 0.129 3.871 10 H 0.068 0.932 11 C -0.128 4.128 12 N -0.680 5.680 13 C 0.086 3.914 14 C 0.034 3.966 15 C -0.543 4.543 16 H 0.063 0.937 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.261 1.261 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.165 0.835 29 H 0.167 0.833 30 H 0.169 0.831 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.332 0.668 35 H 0.019 0.981 36 H 0.062 0.938 37 H -0.009 1.009 38 H -0.014 1.014 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 -7.389 -19.405 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.136 4.136 4 C -0.103 4.103 5 C -0.185 4.185 6 C -0.084 4.084 7 N -0.204 5.204 8 C -0.030 4.030 9 C 0.019 3.981 10 H 0.085 0.915 11 C -0.186 4.186 12 N -0.311 5.311 13 C -0.043 4.043 14 C -0.004 4.004 15 C -0.581 4.581 16 H 0.081 0.919 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.794 3.206 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.185 1.185 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.182 0.818 29 H 0.184 0.816 30 H 0.186 0.814 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.149 0.851 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.010 0.990 38 H 0.004 0.996 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.787 -6.708 -18.065 22.084 hybrid contribution -1.363 -0.431 -0.390 1.482 sum 9.424 -7.140 -18.455 21.917 Atomic orbital electron populations 1.21765 0.94727 1.02673 1.01309 1.20584 0.95992 0.90959 1.04311 1.20977 1.00525 0.98744 0.93393 1.21852 0.95206 0.94869 0.98379 1.22494 1.00181 0.95870 0.99975 1.23226 0.96369 1.00786 0.88012 1.67448 1.10437 1.09723 1.32821 1.21153 0.96607 0.90662 0.94561 1.20574 0.95709 0.93455 0.88322 0.91462 1.21694 0.95928 1.01015 0.99946 1.60490 1.29048 1.20922 1.20645 1.21851 0.93300 0.95403 0.93754 1.18894 0.93361 0.94305 0.93814 1.21600 1.23712 0.93621 1.19212 0.91883 1.26020 0.98612 0.95768 0.99441 1.70132 1.40117 1.08123 1.39005 0.85382 0.77803 0.78663 0.78782 1.19704 1.20722 1.18480 0.92017 0.90580 0.95096 0.88130 0.90684 0.81750 0.81589 0.81381 0.93295 0.92545 0.90912 0.85113 0.96247 0.91976 0.99047 0.99607 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.70 71.98 0.70 -2.13 16 2 C -0.08 -1.43 5.36 29.85 0.16 -1.27 16 3 C -0.13 -2.98 5.15 -19.77 -0.10 -3.08 16 4 C -0.08 -1.34 9.84 22.47 0.22 -1.12 16 5 C -0.17 -2.86 10.11 22.36 0.23 -2.64 16 6 C 0.07 1.72 11.18 84.69 0.95 2.67 16 7 N -0.50 -15.51 10.01 -183.89 -1.84 -17.36 16 8 C 0.11 3.15 5.39 42.54 0.23 3.38 16 9 C 0.13 4.12 2.47 44.17 0.11 4.23 16 10 H 0.07 2.00 4.74 -2.39 -0.01 1.99 16 11 C -0.13 -3.81 9.40 71.98 0.68 -3.13 16 12 N -0.68 -27.34 6.14 -495.43 -3.04 -30.38 16 13 C 0.09 3.83 5.42 86.30 0.47 4.30 16 14 C 0.03 1.90 5.23 29.85 0.16 2.06 16 15 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 16 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 18 N -0.93 -58.84 13.29 21.45 0.28 -58.55 16 19 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.03 0.76 7.33 -2.38 -0.02 0.75 16 26 H 0.10 1.22 8.06 -2.39 -0.02 1.20 16 27 H 0.07 1.38 6.70 -2.39 -0.02 1.37 16 28 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 29 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 30 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 31 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.06 1.72 7.45 -2.39 -0.02 1.70 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.33 13.89 8.30 -89.70 -0.74 13.15 16 35 H 0.02 0.84 8.06 -2.39 -0.02 0.82 16 36 H 0.06 2.73 7.43 -2.39 -0.02 2.71 16 37 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 38 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -71.28 321.29 2.19 -69.09 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.28 Total: 18.10 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 4.48 Total: -28.06 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -4.60 Total: -106.29 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -71.28 2.19 -69.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309980393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.365 kcal (2) G-P(sol) polarization free energy of solvation -71.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds