Wall clock time and date at job start Thu Apr 9 2020 12:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46815 * 2 1 4 4 H 1.09000 * 109.47252 * 304.14017 * 3 2 1 5 5 C 1.50702 * 109.46858 * 184.14411 * 3 2 1 6 6 H 1.07998 * 120.00188 * 240.00120 * 5 3 2 7 7 C 1.37883 * 119.99842 * 59.99901 * 5 3 2 8 8 N 1.31503 * 120.00446 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99736 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47180 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46820 * 120.00029 * 9 7 5 12 12 H 1.48499 * 109.47190 * 240.00108 * 9 7 5 13 13 N 1.46893 * 109.47060 * 64.14728 * 3 2 1 14 14 C 1.46903 * 110.99807 * 205.57747 * 13 3 2 15 15 H 1.08999 * 109.46874 * 323.87726 * 14 13 3 16 16 C 1.52995 * 109.47267 * 83.88125 * 14 13 3 17 17 C 1.53001 * 109.46949 * 203.88171 * 14 13 3 18 18 C 1.50696 * 109.47397 * 64.99912 * 17 14 13 19 19 C 1.38655 * 120.79163 * 269.71868 * 18 17 14 20 20 C 1.38205 * 119.16293 * 179.79652 * 19 18 17 21 21 N 1.31868 * 120.76374 * 0.48681 * 20 19 18 22 22 C 1.31870 * 121.72884 * 359.74494 * 21 20 19 23 23 C 1.38206 * 120.76292 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47550 * 54.88728 * 1 2 3 25 25 H 1.08996 * 109.47057 * 294.88719 * 1 2 3 26 26 H 1.09005 * 109.47613 * 174.88513 * 1 2 3 27 27 H 1.08999 * 109.47282 * 120.00074 * 2 1 3 28 28 H 1.09004 * 109.46952 * 240.00417 * 2 1 3 29 29 H 0.97000 * 120.00706 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00537 * 81.62666 * 13 3 2 31 31 H 1.08999 * 109.47269 * 184.34939 * 16 14 13 32 32 H 1.09000 * 109.47271 * 304.34854 * 16 14 13 33 33 H 1.09005 * 109.47089 * 64.35168 * 16 14 13 34 34 H 1.09003 * 109.47148 * 184.99752 * 17 14 13 35 35 H 1.08995 * 109.47294 * 304.99892 * 17 14 13 36 36 H 1.08000 * 120.41290 * 0.02562 * 19 18 17 37 37 H 1.07994 * 119.61670 * 180.20682 * 20 19 18 38 38 H 1.07994 * 119.61951 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.42366 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6172 1.9773 -0.8506 5 6 3.5434 1.4438 -0.1027 6 1 4.1377 1.8922 0.6797 7 6 4.1602 0.8724 -1.1955 8 7 3.4366 0.3267 -2.1483 9 14 6.0239 0.8746 -1.3230 10 1 6.6010 1.5456 -0.1305 11 1 6.5171 -0.5246 -1.3903 12 1 6.4353 1.6039 -2.5494 13 7 1.6337 2.1055 1.2463 14 6 1.5440 3.5603 1.0637 15 1 2.3299 3.8903 0.3843 16 6 0.1777 3.9171 0.4748 17 6 1.7138 4.2555 2.4160 18 6 3.1046 4.0043 2.9389 19 6 3.3733 2.9072 3.7430 20 6 4.6620 2.7069 4.2005 21 7 5.6271 3.5495 3.8883 22 6 5.4073 4.6056 3.1299 23 6 4.1450 4.8681 2.6321 24 1 -0.3634 0.5911 -0.8406 25 1 -0.3633 0.4325 0.9322 26 1 -0.3634 -1.0236 -0.0916 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.8705 -0.0749 -2.9173 30 1 2.2625 1.8739 2.0007 31 1 0.1395 4.9865 0.2674 32 1 0.0246 3.3619 -0.4506 33 1 -0.6045 3.6573 1.1882 34 1 1.5592 5.3277 2.2953 35 1 0.9834 3.8603 3.1220 36 1 2.5861 2.2159 4.0055 37 1 4.8801 1.8529 4.8245 38 1 6.2229 5.2737 2.8957 39 1 3.9711 5.7349 2.0118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310002807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:34 Heat of formation + Delta-G solvation = 14.429830 kcal Electronic energy + Delta-G solvation = -18687.468841 eV Core-core repulsion = 16015.103218 eV Total energy + Delta-G solvation = -2672.365623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.95118 -37.07942 -34.35748 -32.21041 -31.29938 -30.93882 -29.12581 -26.76041 -25.87652 -23.21672 -22.82600 -21.93080 -19.80313 -19.40361 -16.64769 -16.37184 -16.09005 -15.37303 -14.94269 -14.62117 -13.97149 -13.53148 -13.43373 -13.30084 -12.80595 -12.72139 -12.03442 -11.95125 -11.47736 -11.40206 -11.25404 -11.12384 -11.03885 -10.80139 -10.59469 -10.51210 -10.08160 -9.57620 -9.54654 -9.19462 -9.07932 -9.01696 -8.85768 -8.36178 -7.25859 -5.98972 -4.11055 1.42648 1.55771 3.25981 3.34923 3.40857 4.09853 4.41017 4.72031 4.90774 4.96224 5.21920 5.29807 5.37101 5.46105 5.50480 5.73478 5.78745 5.98507 6.04110 6.06583 6.18664 6.31137 6.36674 6.42565 6.50004 6.61148 6.67848 6.73934 6.84297 6.99539 7.13732 7.17283 7.46241 7.60435 7.78883 8.09947 8.17299 8.24632 8.34716 8.68319 9.01944 9.56885 11.01117 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.010146 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.033282 B = 2759.073589 C = 3926.739313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.687 5.687 14 C 0.092 3.908 15 H 0.048 0.952 16 C -0.134 4.134 17 C -0.085 4.085 18 C -0.028 4.028 19 C -0.165 4.165 20 C 0.100 3.900 21 N -0.494 5.494 22 C 0.096 3.904 23 C -0.169 4.169 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.023 0.977 27 H 0.028 0.972 28 H 0.089 0.911 29 H 0.260 0.740 30 H 0.328 0.672 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 7.155 8.708 11.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.710 3.290 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.319 5.319 14 C -0.019 4.019 15 H 0.066 0.934 16 C -0.192 4.192 17 C -0.123 4.123 18 C -0.036 4.036 19 C -0.185 4.185 20 C -0.057 4.057 21 N -0.203 5.203 22 C -0.061 4.061 23 C -0.189 4.189 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.154 0.846 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.779 6.806 8.738 11.419 hybrid contribution 1.287 0.264 -0.689 1.483 sum -1.492 7.070 8.049 10.817 Atomic orbital electron populations 1.21681 0.98995 0.98194 1.00333 1.21495 0.92066 0.99346 1.01587 1.19161 0.92551 0.91044 0.86464 0.94945 1.21864 0.92694 1.37604 1.05664 0.93107 1.24894 0.97712 0.95057 0.95696 1.69876 1.34685 1.38242 1.09556 0.86686 0.86489 0.77815 0.77983 1.19856 1.20937 1.21049 1.61067 1.55605 1.05257 1.09943 1.21296 0.96891 0.90417 0.93286 0.93436 1.21760 0.96906 0.99233 1.01273 1.20915 0.91959 1.01017 0.98370 1.20343 0.96383 0.93400 0.93450 1.22059 0.98737 0.98291 0.99433 1.22671 0.88818 0.97143 0.97060 1.67608 1.35491 1.03746 1.13492 1.22627 0.95779 0.94248 0.93404 1.21983 0.94021 1.01225 1.01702 0.94497 0.93475 0.95773 0.95266 0.89237 0.93002 0.85335 0.93810 0.92267 0.92877 0.90822 0.90245 0.84609 0.83113 0.83349 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.73 37.15 0.36 -2.38 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.23 1.78 -68.87 -0.12 5.11 16 4 H 0.03 0.87 7.02 -51.93 -0.36 0.51 16 5 C -0.54 -14.51 8.29 -34.44 -0.29 -14.80 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 8 N -0.88 -25.05 11.30 55.43 0.63 -24.42 16 9 Si 0.88 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 N -0.69 -13.81 5.56 -100.96 -0.56 -14.37 16 14 C 0.09 1.62 2.45 -67.71 -0.17 1.46 16 15 H 0.05 0.98 7.67 -51.93 -0.40 0.58 16 16 C -0.13 -2.12 9.41 37.16 0.35 -1.77 16 17 C -0.08 -1.21 5.03 -27.88 -0.14 -1.35 16 18 C -0.03 -0.42 4.85 -104.32 -0.51 -0.93 16 19 C -0.17 -2.51 8.17 -39.44 -0.32 -2.83 16 20 C 0.10 1.55 11.18 -17.55 -0.20 1.35 16 21 N -0.49 -8.35 10.36 -13.26 -0.14 -8.48 16 22 C 0.10 1.48 11.18 -17.55 -0.20 1.28 16 23 C -0.17 -2.53 9.82 -39.44 -0.39 -2.92 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.33 6.59 5.28 -39.29 -0.21 6.38 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.05 7.30 -51.93 -0.38 0.67 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.08 1.06 8.10 -51.93 -0.42 0.63 16 36 H 0.14 1.85 7.61 -52.49 -0.40 1.45 16 37 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -29.28 316.55 -8.41 -37.69 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.23 Total: 6.82 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -1.85 Total: -18.64 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.07 Total: -47.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.28 -8.41 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310002807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.115 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds