Wall clock time and date at job start Thu Apr 9 2020 12:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46815 * 2 1 4 4 H 1.09000 * 109.47252 * 304.14017 * 3 2 1 5 5 C 1.50702 * 109.46858 * 184.14411 * 3 2 1 6 6 H 1.07998 * 120.00188 * 240.00120 * 5 3 2 7 7 C 1.37883 * 119.99842 * 59.99901 * 5 3 2 8 8 N 1.31503 * 120.00446 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99736 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47180 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46820 * 120.00029 * 9 7 5 12 12 H 1.48499 * 109.47190 * 240.00108 * 9 7 5 13 13 N 1.46893 * 109.47060 * 64.14728 * 3 2 1 14 14 C 1.46903 * 110.99807 * 205.57747 * 13 3 2 15 15 H 1.08999 * 109.46874 * 323.87726 * 14 13 3 16 16 C 1.52995 * 109.47267 * 83.88125 * 14 13 3 17 17 C 1.53001 * 109.46949 * 203.88171 * 14 13 3 18 18 C 1.50696 * 109.47397 * 64.99912 * 17 14 13 19 19 C 1.38655 * 120.79163 * 269.71868 * 18 17 14 20 20 C 1.38205 * 119.16293 * 179.79652 * 19 18 17 21 21 N 1.31868 * 120.76374 * 0.48681 * 20 19 18 22 22 C 1.31870 * 121.72884 * 359.74494 * 21 20 19 23 23 C 1.38206 * 120.76292 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47550 * 54.88728 * 1 2 3 25 25 H 1.08996 * 109.47057 * 294.88719 * 1 2 3 26 26 H 1.09005 * 109.47613 * 174.88513 * 1 2 3 27 27 H 1.08999 * 109.47282 * 120.00074 * 2 1 3 28 28 H 1.09004 * 109.46952 * 240.00417 * 2 1 3 29 29 H 0.97000 * 120.00706 * 179.97438 * 8 7 5 30 30 H 1.00900 * 111.00537 * 81.62666 * 13 3 2 31 31 H 1.08999 * 109.47269 * 184.34939 * 16 14 13 32 32 H 1.09000 * 109.47271 * 304.34854 * 16 14 13 33 33 H 1.09005 * 109.47089 * 64.35168 * 16 14 13 34 34 H 1.09003 * 109.47148 * 184.99752 * 17 14 13 35 35 H 1.08995 * 109.47294 * 304.99892 * 17 14 13 36 36 H 1.08000 * 120.41290 * 0.02562 * 19 18 17 37 37 H 1.07994 * 119.61670 * 180.20682 * 20 19 18 38 38 H 1.07994 * 119.61951 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.42366 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6172 1.9773 -0.8506 5 6 3.5434 1.4438 -0.1027 6 1 4.1377 1.8922 0.6797 7 6 4.1602 0.8724 -1.1955 8 7 3.4366 0.3267 -2.1483 9 14 6.0239 0.8746 -1.3230 10 1 6.6010 1.5456 -0.1305 11 1 6.5171 -0.5246 -1.3903 12 1 6.4353 1.6039 -2.5494 13 7 1.6337 2.1055 1.2463 14 6 1.5440 3.5603 1.0637 15 1 2.3299 3.8903 0.3843 16 6 0.1777 3.9171 0.4748 17 6 1.7138 4.2555 2.4160 18 6 3.1046 4.0043 2.9389 19 6 3.3733 2.9072 3.7430 20 6 4.6620 2.7069 4.2005 21 7 5.6271 3.5495 3.8883 22 6 5.4073 4.6056 3.1299 23 6 4.1450 4.8681 2.6321 24 1 -0.3634 0.5911 -0.8406 25 1 -0.3633 0.4325 0.9322 26 1 -0.3634 -1.0236 -0.0916 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.8705 -0.0749 -2.9173 30 1 2.2625 1.8739 2.0007 31 1 0.1395 4.9865 0.2674 32 1 0.0246 3.3619 -0.4506 33 1 -0.6045 3.6573 1.1882 34 1 1.5592 5.3277 2.2953 35 1 0.9834 3.8603 3.1220 36 1 2.5861 2.2159 4.0055 37 1 4.8801 1.8529 4.8245 38 1 6.2229 5.2737 2.8957 39 1 3.9711 5.7349 2.0118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310002807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:33 Heat of formation + Delta-G solvation = -2.628724 kcal Electronic energy + Delta-G solvation = -18688.208556 eV Core-core repulsion = 16015.103218 eV Total energy + Delta-G solvation = -2673.105337 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.12805 -38.64680 -36.00610 -33.90522 -32.95654 -32.08938 -30.72553 -27.98732 -27.79054 -24.71665 -24.33443 -23.18976 -21.36394 -21.09522 -18.69165 -17.53899 -17.33586 -16.78332 -16.54131 -16.25156 -15.55963 -15.03337 -14.77581 -14.59183 -14.51960 -14.09295 -13.62861 -13.26733 -13.14213 -13.09452 -12.94829 -12.71604 -12.50869 -12.37805 -12.27112 -11.94744 -11.89878 -11.48078 -11.35649 -10.93771 -10.47806 -10.37906 -10.32197 -10.01825 -9.01322 -8.07133 -6.27561 0.26865 0.37211 1.28943 1.33424 1.42652 2.35592 2.91709 3.12253 3.62074 3.68893 3.76353 3.95908 4.19828 4.26819 4.31537 4.54705 4.57044 4.64954 4.78074 4.79105 4.80348 4.93252 4.94650 5.01369 5.08924 5.13543 5.22014 5.29082 5.45215 5.47637 5.48980 5.56719 5.67462 5.80400 5.86000 6.13421 6.23497 6.42365 6.87730 7.06017 7.07376 7.43523 8.88776 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.010146 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.033282 B = 2759.073589 C = 3926.739313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C 0.226 3.774 4 H 0.002 0.998 5 C -0.545 4.545 6 H 0.038 0.962 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.937 3.063 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.280 1.280 13 N -0.676 5.676 14 C 0.090 3.910 15 H 0.013 0.987 16 C -0.128 4.128 17 C -0.073 4.073 18 C -0.042 4.042 19 C -0.172 4.172 20 C 0.085 3.915 21 N -0.520 5.520 22 C 0.081 3.919 23 C -0.177 4.177 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.025 0.975 28 H 0.058 0.942 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 7.914 9.664 12.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.143 4.143 3 C 0.117 3.883 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.057 0.943 7 C -0.175 4.175 8 N -0.547 5.547 9 Si 0.764 3.236 10 H -0.205 1.205 11 H -0.205 1.205 12 H -0.205 1.205 13 N -0.308 5.308 14 C -0.020 4.020 15 H 0.031 0.969 16 C -0.185 4.185 17 C -0.111 4.111 18 C -0.050 4.050 19 C -0.192 4.192 20 C -0.072 4.072 21 N -0.229 5.229 22 C -0.075 4.075 23 C -0.196 4.196 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.167 0.833 37 H 0.188 0.812 38 H 0.188 0.812 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.397 7.573 9.701 12.767 hybrid contribution 1.485 0.057 -0.977 1.778 sum -1.912 7.630 8.724 11.747 Atomic orbital electron populations 1.21528 0.96151 0.99406 1.00783 1.21365 0.94591 0.98532 0.99772 1.18881 0.90853 0.91353 0.87210 0.98031 1.22091 0.94211 1.36994 1.05172 0.94327 1.25516 1.01148 0.95133 0.95706 1.69984 1.35933 1.38871 1.09928 0.85833 0.82369 0.77781 0.77583 1.20537 1.20471 1.20536 1.61017 1.54860 1.06927 1.07989 1.21369 0.96876 0.88903 0.94897 0.96927 1.21705 0.96077 1.00551 1.00211 1.20847 0.91712 1.02266 0.96250 1.20605 0.97115 0.93647 0.93666 1.22276 0.99020 0.98532 0.99363 1.23083 0.88977 0.97671 0.97430 1.67628 1.36321 1.04591 1.14407 1.23077 0.96866 0.94358 0.93199 1.22284 0.93839 1.01885 1.01620 0.95073 0.92073 0.93986 0.95644 0.92383 0.92953 0.85237 0.91211 0.94952 0.91220 0.88200 0.88669 0.83287 0.81192 0.81219 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.73 71.98 0.70 -4.09 16 2 C -0.10 -4.96 5.45 30.59 0.17 -4.79 16 3 C 0.23 11.06 1.78 44.17 0.08 11.14 16 4 H 0.00 0.10 7.02 -2.39 -0.02 0.08 16 5 C -0.55 -29.71 8.29 25.60 0.21 -29.50 16 6 H 0.04 2.16 7.73 -2.91 -0.02 2.14 16 7 C 0.03 1.39 5.29 84.66 0.45 1.84 16 8 N -0.91 -52.14 11.30 21.45 0.24 -51.90 16 9 Si 0.94 44.90 29.54 68.60 2.03 46.92 16 10 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 N -0.68 -26.66 5.56 -473.32 -2.63 -29.29 16 14 C 0.09 3.06 2.45 44.91 0.11 3.17 16 15 H 0.01 0.52 7.67 -2.39 -0.02 0.50 16 16 C -0.13 -3.80 9.41 71.98 0.68 -3.12 16 17 C -0.07 -1.89 5.03 29.85 0.15 -1.74 16 18 C -0.04 -1.22 4.85 -19.67 -0.10 -1.32 16 19 C -0.17 -4.99 8.17 22.36 0.18 -4.81 16 20 C 0.08 2.55 11.18 84.68 0.95 3.50 16 21 N -0.52 -17.19 10.36 -195.85 -2.03 -19.22 16 22 C 0.08 2.42 11.18 84.68 0.95 3.36 16 23 C -0.18 -5.02 9.82 22.36 0.22 -4.80 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 2.22 7.87 -2.39 -0.02 2.20 16 26 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 3.15 5.97 -2.39 -0.01 3.13 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.33 12.90 5.28 -89.69 -0.47 12.43 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.03 1.12 7.30 -2.39 -0.02 1.10 16 33 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.10 2.08 8.10 -2.39 -0.02 2.06 16 35 H 0.09 2.19 8.10 -2.39 -0.02 2.17 16 36 H 0.15 3.79 7.61 -2.91 -0.02 3.77 16 37 H 0.17 4.20 8.06 -2.91 -0.02 4.17 16 38 H 0.17 4.06 8.06 -2.91 -0.02 4.03 16 39 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -63.04 316.55 2.89 -60.15 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.54 Total: 24.48 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 4.74 Total: -31.15 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -4.42 Total: -100.41 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -63.04 2.89 -60.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310002807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.517 kcal (2) G-P(sol) polarization free energy of solvation -63.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds