Wall clock time and date at job start Thu Apr 9 2020 12:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46833 * 2 1 4 4 H 1.09001 * 109.47297 * 55.80609 * 3 2 1 5 5 C 1.50703 * 109.46894 * 175.80581 * 3 2 1 6 6 H 1.08003 * 119.99794 * 120.00247 * 5 3 2 7 7 C 1.37881 * 120.00040 * 299.99533 * 5 3 2 8 8 N 1.31511 * 119.99844 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00007 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47272 * 89.99870 * 9 7 5 11 11 H 1.48498 * 109.46979 * 210.00182 * 9 7 5 12 12 H 1.48504 * 109.47237 * 330.00108 * 9 7 5 13 13 N 1.46895 * 109.47009 * 295.80213 * 3 2 1 14 14 C 1.46908 * 110.99838 * 154.48904 * 13 3 2 15 15 H 1.08990 * 109.47149 * 37.28980 * 14 13 3 16 16 C 1.53000 * 109.46900 * 277.28777 * 14 13 3 17 17 C 1.53004 * 109.46963 * 157.29207 * 14 13 3 18 18 C 1.50698 * 109.46935 * 294.99951 * 17 14 13 19 19 C 1.38658 * 120.78793 * 270.29443 * 18 17 14 20 20 C 1.38204 * 119.15948 * 180.22086 * 19 18 17 21 21 N 1.31865 * 120.76362 * 359.48231 * 20 19 18 22 22 C 1.31869 * 121.73118 * 0.27528 * 21 20 19 23 23 C 1.38213 * 120.76171 * 359.97438 * 22 21 20 24 24 H 1.08992 * 109.47630 * 305.56827 * 1 2 3 25 25 H 1.08997 * 109.46968 * 65.57875 * 1 2 3 26 26 H 1.09000 * 109.46822 * 185.57099 * 1 2 3 27 27 H 1.08994 * 109.47541 * 239.99696 * 2 1 3 28 28 H 1.09002 * 109.46884 * 119.99496 * 2 1 3 29 29 H 0.97002 * 119.99913 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00228 * 278.44466 * 13 3 2 31 31 H 1.09002 * 109.47141 * 57.80676 * 16 14 13 32 32 H 1.08999 * 109.47124 * 177.80050 * 16 14 13 33 33 H 1.09001 * 109.47477 * 297.80637 * 16 14 13 34 34 H 1.08999 * 109.46901 * 174.99494 * 17 14 13 35 35 H 1.09004 * 109.46926 * 54.99951 * 17 14 13 36 36 H 1.07996 * 120.41620 * 0.02562 * 19 18 17 37 37 H 1.07996 * 119.61577 * 179.75243 * 20 19 18 38 38 H 1.07998 * 119.62269 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.41819 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6165 1.9776 0.8500 5 6 3.5433 1.4438 0.1039 6 1 4.1383 1.8921 -0.6781 7 6 4.1593 0.8728 1.1974 8 7 3.4348 0.3267 2.1494 9 14 6.0228 0.8751 1.3265 10 1 6.4688 2.1048 2.0295 11 1 6.4676 -0.3195 2.0883 12 1 6.6134 0.8417 -0.0356 13 7 1.6347 2.1051 -1.2469 14 6 1.5464 3.5602 -1.0652 15 1 2.3451 3.8927 -0.4022 16 6 0.1915 3.9159 -0.4499 17 6 1.6881 4.2531 -2.4220 18 6 3.0686 4.0030 -2.9719 19 6 4.1149 4.8656 -2.6824 20 6 5.3664 4.6066 -3.2084 21 7 5.5730 3.5490 -3.9684 22 6 4.6030 2.7047 -4.2604 23 6 3.3242 2.9017 -3.7745 24 1 -0.3634 0.5977 0.8358 25 1 -0.3633 0.4249 -0.9357 26 1 -0.3633 -1.0228 0.0998 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8682 -0.0754 2.9185 30 1 2.2635 1.8723 -2.0009 31 1 0.0741 3.3915 0.4984 32 1 0.1412 4.9913 -0.2789 33 1 -0.6061 3.6185 -1.1307 34 1 1.5340 5.3252 -2.3002 35 1 0.9443 3.8553 -3.1125 36 1 3.9531 5.7307 -2.0564 37 1 6.1857 5.2758 -2.9910 38 1 4.8101 1.8495 -4.8866 39 1 2.5340 2.2065 -4.0168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310002809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:37 Heat of formation + Delta-G solvation = 14.424033 kcal Electronic energy + Delta-G solvation = -18674.893895 eV Core-core repulsion = 16002.528021 eV Total energy + Delta-G solvation = -2672.365874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.95852 -37.08092 -34.35989 -32.21221 -31.29936 -30.94592 -29.12424 -26.76369 -25.87782 -23.22225 -22.82945 -21.93417 -19.80489 -19.39476 -16.64838 -16.37712 -16.09699 -15.37706 -14.94414 -14.62512 -13.97535 -13.53863 -13.44147 -13.30563 -12.80155 -12.72436 -12.02415 -11.95112 -11.48215 -11.40934 -11.25084 -11.12773 -11.03087 -10.79477 -10.61834 -10.51030 -10.08074 -9.57261 -9.54907 -9.20582 -9.08546 -9.02282 -8.86566 -8.35681 -7.25938 -5.98924 -4.11059 1.41807 1.54914 3.26913 3.34361 3.39780 4.08990 4.40914 4.71303 4.90332 4.95841 5.21756 5.29747 5.36587 5.45522 5.50428 5.73253 5.78613 5.98017 6.03748 6.06566 6.18781 6.30668 6.36671 6.42454 6.49946 6.61089 6.67836 6.73895 6.84316 6.98809 7.13833 7.17246 7.46180 7.60406 7.78787 8.09869 8.17276 8.23793 8.34692 8.68207 9.01681 9.56764 11.01148 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.010020 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.338174 B = 2793.645911 C = 3944.643213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.540 4.540 6 H 0.050 0.950 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.883 3.117 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.687 5.687 14 C 0.092 3.908 15 H 0.047 0.953 16 C -0.134 4.134 17 C -0.085 4.085 18 C -0.028 4.028 19 C -0.169 4.169 20 C 0.095 3.905 21 N -0.494 5.494 22 C 0.099 3.901 23 C -0.165 4.165 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.023 0.977 27 H 0.028 0.972 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.328 0.672 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 7.129 -8.722 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.579 4.579 6 H 0.068 0.932 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.319 5.319 14 C -0.019 4.019 15 H 0.065 0.935 16 C -0.192 4.192 17 C -0.122 4.122 18 C -0.036 4.036 19 C -0.189 4.189 20 C -0.061 4.061 21 N -0.203 5.203 22 C -0.057 4.057 23 C -0.185 4.185 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.842 6.774 -8.765 11.436 hybrid contribution 1.298 0.283 0.697 1.500 sum -1.544 7.057 -8.068 10.830 Atomic orbital electron populations 1.21678 0.98993 0.98192 1.00322 1.21494 0.92064 0.99347 1.01591 1.19156 0.92528 0.91048 0.86463 0.94927 1.21826 0.92706 1.37728 1.05652 0.93187 1.24893 0.97717 0.95037 0.95702 1.69872 1.34772 1.38145 1.09565 0.86732 0.86444 0.77530 0.78190 1.20787 1.21124 1.19953 1.61071 1.55631 1.05226 1.09945 1.21293 0.96988 0.90446 0.93163 0.93492 1.21760 0.97003 0.99175 1.01248 1.20910 0.92140 1.01005 0.98175 1.20350 0.96358 0.93394 0.93518 1.21988 0.94046 1.01292 1.01598 1.22631 0.95902 0.94253 0.93338 1.67607 1.35006 1.03689 1.14029 1.22679 0.88804 0.97177 0.97066 1.22065 0.98882 0.98219 0.99318 0.94486 0.93502 0.95774 0.95266 0.89230 0.92945 0.85336 0.92303 0.93799 0.92808 0.90824 0.90230 0.85239 0.83329 0.83106 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.72 37.16 0.36 -2.37 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.24 1.79 -68.87 -0.12 5.11 16 4 H 0.03 0.88 6.94 -51.93 -0.36 0.52 16 5 C -0.54 -14.54 8.28 -34.44 -0.29 -14.83 16 6 H 0.05 1.38 7.73 -52.48 -0.41 0.98 16 7 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 8 N -0.89 -25.05 11.29 55.43 0.63 -24.42 16 9 Si 0.88 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.69 -13.81 5.57 -100.95 -0.56 -14.38 16 14 C 0.09 1.62 2.46 -67.71 -0.17 1.45 16 15 H 0.05 0.97 7.68 -51.93 -0.40 0.57 16 16 C -0.13 -2.13 9.39 37.16 0.35 -1.78 16 17 C -0.08 -1.20 5.03 -27.88 -0.14 -1.34 16 18 C -0.03 -0.43 4.85 -104.32 -0.51 -0.93 16 19 C -0.17 -2.51 9.82 -39.44 -0.39 -2.90 16 20 C 0.10 1.45 11.18 -17.55 -0.20 1.26 16 21 N -0.49 -8.28 10.36 -13.25 -0.14 -8.42 16 22 C 0.10 1.53 11.18 -17.55 -0.20 1.34 16 23 C -0.17 -2.49 8.16 -39.44 -0.32 -2.81 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.90 7.89 -51.93 -0.41 0.49 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.33 6.60 5.29 -39.29 -0.21 6.39 16 31 H 0.06 1.05 7.24 -51.93 -0.38 0.67 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.14 1.85 7.62 -52.49 -0.40 1.45 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -29.21 316.43 -8.40 -37.61 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.23 Total: 6.86 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.85 Total: -18.68 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.07 Total: -47.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.21 -8.40 -37.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310002809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.038 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds