Wall clock time and date at job start Thu Apr 9 2020 12:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 120.00182 * 2 1 4 4 H 1.07996 * 120.00300 * 202.32247 * 3 2 1 5 5 C 1.38815 * 119.99882 * 22.31581 * 3 2 1 6 6 N 1.31622 * 119.99676 * 11.15918 * 5 3 2 7 7 Si 1.86795 * 120.00165 * 191.15090 * 5 3 2 8 8 H 1.48503 * 109.47118 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.47059 * 120.00435 * 7 5 3 10 10 H 1.48496 * 109.47730 * 240.00626 * 7 5 3 11 11 S 1.65596 * 119.99750 * 179.97438 * 2 1 3 12 12 O 1.42103 * 104.27687 * 153.92992 * 11 2 1 13 13 O 1.42099 * 104.28188 * 26.07399 * 11 2 1 14 14 C 1.81398 * 104.45098 * 270.00053 * 11 2 1 15 15 C 1.53003 * 109.47328 * 180.02562 * 14 11 2 16 16 H 1.09005 * 110.35078 * 57.85884 * 15 14 11 17 17 C 1.54948 * 110.30978 * 179.97438 * 15 14 11 18 18 C 1.55307 * 100.97702 * 155.33988 * 17 15 14 19 19 C 1.54432 * 102.22922 * 325.91934 * 18 17 15 20 20 O 1.43234 * 107.60670 * 21.29955 * 19 18 17 21 21 H 1.08991 * 109.47197 * 274.15055 * 1 2 3 22 22 H 1.09000 * 109.46666 * 34.15491 * 1 2 3 23 23 H 1.09000 * 109.47006 * 154.15302 * 1 2 3 24 24 H 0.97003 * 119.99189 * 179.97438 * 6 5 3 25 25 H 1.09000 * 109.47070 * 60.00120 * 14 11 2 26 26 H 1.09000 * 109.46964 * 300.00041 * 14 11 2 27 27 H 1.09002 * 111.12232 * 273.28108 * 17 15 14 28 28 H 1.09001 * 111.12128 * 37.40312 * 17 15 14 29 29 H 1.09003 * 110.84390 * 84.08070 * 18 17 15 30 30 H 1.08999 * 110.84195 * 207.69601 * 18 17 15 31 31 H 1.08998 * 109.79278 * 261.79892 * 19 18 17 32 32 H 1.09002 * 109.84882 * 140.83456 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1690 1.2209 -0.3552 5 6 1.5337 2.3430 0.4565 6 7 0.3819 2.2696 1.0893 7 14 2.3393 4.0043 0.1729 8 1 3.6187 3.8158 -0.5572 9 1 1.4330 4.8631 -0.6310 10 1 2.6065 4.6547 1.4808 11 16 2.2930 -1.4341 0.0006 12 8 3.5395 -1.1194 -0.6047 13 8 1.3970 -2.3564 -0.6042 14 6 2.5193 -1.8254 1.7574 15 6 3.2819 -3.1450 1.8919 16 1 4.2439 -3.0804 1.3836 17 6 3.4867 -3.4978 3.3868 18 6 3.6436 -5.0409 3.3076 19 6 2.6970 -5.4067 2.1435 20 8 2.5049 -4.2269 1.3542 21 1 -0.3633 0.0744 1.0249 22 1 -0.3633 0.8504 -0.5770 23 1 -0.3633 -0.9249 -0.4480 24 1 -0.0484 3.0782 1.4086 25 1 1.5451 -1.9178 2.2375 26 1 3.0866 -1.0278 2.2371 27 1 4.3895 -3.0308 3.7805 28 1 2.6141 -3.2215 3.9787 29 1 4.6720 -5.3147 3.0717 30 1 3.3186 -5.5119 4.2353 31 1 1.7399 -5.7469 2.5389 32 1 3.1462 -6.1905 1.5335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063155896.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:27 Heat of formation + Delta-G solvation = -110.905539 kcal Electronic energy + Delta-G solvation = -17250.342514 eV Core-core repulsion = 14338.601042 eV Total energy + Delta-G solvation = -2911.741472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.20303 -35.61493 -35.58226 -34.40228 -32.12227 -31.41421 -31.32634 -26.37334 -25.93603 -23.45089 -21.66981 -21.08717 -18.29591 -17.05728 -16.71190 -16.44727 -15.69005 -15.18899 -14.68471 -14.55645 -14.22854 -13.39162 -13.15688 -12.73510 -12.65098 -11.96903 -11.77700 -11.65776 -11.47811 -11.28436 -11.09547 -10.99085 -10.96293 -10.77714 -10.61787 -10.55744 -10.09273 -10.05444 -9.45623 -9.32063 -9.20665 -8.01248 -6.49551 -3.98101 1.67434 3.11677 3.18138 3.25168 3.94622 3.96503 4.34011 4.54857 4.80257 4.85332 4.96556 5.18768 5.27053 5.39709 5.49378 5.60232 5.73434 5.76707 5.88140 5.90879 6.12538 6.26264 6.49600 6.54436 6.95148 7.15746 7.19749 7.31527 7.50447 8.34794 8.72334 9.19221 10.47094 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.037148 B = 0.006946 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.569236 B = 4029.886011 C = 4208.953640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.816 5.816 3 C -0.252 4.252 4 H 0.115 0.885 5 C 0.029 3.971 6 N -0.845 5.845 7 Si 0.926 3.074 8 H -0.262 1.262 9 H -0.277 1.277 10 H -0.279 1.279 11 S 2.500 3.500 12 O -0.987 6.987 13 O -0.985 6.985 14 C -0.662 4.662 15 C 0.094 3.906 16 H 0.076 0.924 17 C -0.145 4.145 18 C -0.158 4.158 19 C 0.049 3.951 20 O -0.372 6.372 21 H 0.050 0.950 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.272 0.728 25 H 0.115 0.885 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 -6.585 5.878 9.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.642 5.642 3 C -0.397 4.397 4 H 0.132 0.868 5 C -0.182 4.182 6 N -0.486 5.486 7 Si 0.752 3.248 8 H -0.186 1.186 9 H -0.203 1.203 10 H -0.204 1.204 11 S 2.596 3.404 12 O -0.977 6.977 13 O -0.974 6.974 14 C -0.781 4.781 15 C 0.036 3.964 16 H 0.094 0.906 17 C -0.184 4.184 18 C -0.196 4.196 19 C -0.027 4.027 20 O -0.291 6.291 21 H 0.069 0.931 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.133 0.867 26 H 0.143 0.857 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.983 -7.228 5.080 9.325 hybrid contribution 0.323 0.926 1.178 1.533 sum 3.307 -6.302 6.258 9.477 Atomic orbital electron populations 1.21281 0.79518 0.99992 1.01638 1.53839 1.13154 1.19175 1.78002 1.20002 1.00734 0.83765 1.35208 0.86784 1.25709 0.96539 1.00889 0.95073 1.70123 1.15678 1.29860 1.32911 0.85846 0.79744 0.80820 0.78408 1.18619 1.20263 1.20447 1.12382 0.74085 0.74261 0.79628 1.93355 1.45781 1.83357 1.75183 1.93367 1.63865 1.64695 1.75506 1.31188 1.07669 1.01853 1.37347 1.22539 0.93732 0.86434 0.93730 0.90604 1.23304 1.03159 0.94927 0.96969 1.23163 1.00564 0.96527 0.99342 1.23112 0.98966 0.88712 0.91950 1.88584 1.68757 1.19199 1.52590 0.93127 0.91020 0.93652 0.91758 0.86692 0.85692 0.89910 0.90106 0.90587 0.90160 0.91380 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.87 8.90 59.85 0.53 3.41 16 2 N -0.82 -20.44 3.24 -66.69 -0.22 -20.65 16 3 C -0.25 -6.46 9.40 -15.06 -0.14 -6.60 16 4 H 0.11 2.94 7.08 -52.49 -0.37 2.57 16 5 C 0.03 0.70 5.13 -17.43 -0.09 0.61 16 6 N -0.85 -20.95 10.57 55.49 0.59 -20.36 16 7 Si 0.93 18.98 29.57 -169.99 -5.03 13.96 16 8 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 9 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 10 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 11 S 2.50 60.37 5.24 -107.50 -0.56 59.81 16 12 O -0.99 -26.12 16.77 -57.54 -0.96 -27.08 16 13 O -0.98 -25.83 16.09 -59.58 -0.96 -26.79 16 14 C -0.66 -13.17 5.92 37.16 0.22 -12.95 16 15 C 0.09 1.69 3.45 -25.70 -0.09 1.60 16 16 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 17 C -0.15 -1.99 6.57 -24.48 -0.16 -2.15 16 18 C -0.16 -1.81 7.02 -24.76 -0.17 -1.99 16 19 C 0.05 0.69 7.80 37.91 0.30 0.98 16 20 O -0.37 -7.14 10.41 -35.72 -0.37 -7.51 16 21 H 0.05 1.17 7.42 -51.93 -0.39 0.79 16 22 H 0.07 1.71 7.18 -51.93 -0.37 1.34 16 23 H 0.04 1.02 6.83 -51.93 -0.35 0.66 16 24 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 25 H 0.11 2.22 8.14 -51.92 -0.42 1.80 16 26 H 0.12 2.34 8.14 -51.92 -0.42 1.92 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 277.40 15.07 4.18 4.18 Total: -1.00 -30.93 277.40 -7.36 -38.29 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.42 Total: 3.26 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 0.39 Total: -17.09 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.37 Total: -41.02 kcal Atomic # 8 Polarization: -59.09 SS G_CDS: -2.30 Total: -61.38 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.96 kcal Atomic # 16 Polarization: 60.37 SS G_CDS: -0.56 Total: 59.81 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.93 -7.36 -38.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063155896.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.613 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds