Wall clock time and date at job start Thu Apr 9 2020 12:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 S 1.65600 * 119.99728 * 164.99627 * 10 9 7 12 12 O 1.42110 * 104.27500 * 181.07030 * 11 10 9 13 13 O 1.42095 * 104.28107 * 308.92662 * 11 10 9 14 14 C 1.81401 * 104.45089 * 65.00161 * 11 10 9 15 15 C 1.52994 * 109.47446 * 179.97438 * 14 11 10 16 16 H 1.09003 * 110.27300 * 59.29993 * 15 14 11 17 17 C 1.54943 * 110.31000 * 181.38955 * 15 14 11 18 18 C 1.55416 * 100.89398 * 155.28612 * 17 15 14 19 19 C 1.54382 * 102.31149 * 325.99251 * 18 17 15 20 20 O 1.43246 * 107.58428 * 21.28205 * 19 18 17 21 21 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 0.96998 * 120.00106 * 344.99857 * 10 9 7 25 25 H 1.09002 * 109.47012 * 300.00005 * 14 11 10 26 26 H 1.09001 * 109.47013 * 59.99160 * 14 11 10 27 27 H 1.08997 * 111.12860 * 273.27898 * 17 15 14 28 28 H 1.08996 * 111.12497 * 37.44264 * 17 15 14 29 29 H 1.08995 * 110.88389 * 207.75055 * 18 17 15 30 30 H 1.09006 * 110.93157 * 84.25216 * 18 17 15 31 31 H 1.08994 * 109.83090 * 261.77019 * 19 18 17 32 32 H 1.09001 * 109.83289 * 140.79168 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0010 11 16 5.5821 -2.8939 -0.3697 12 8 5.6811 -4.3095 -0.2952 13 8 5.8001 -2.2078 -1.5948 14 6 6.5263 -2.1183 0.9710 15 6 8.0214 -2.3464 0.7401 16 1 8.3253 -1.9201 -0.2160 17 6 8.8453 -1.7212 1.8938 18 6 10.1392 -2.5797 1.8296 19 6 9.5975 -3.9598 1.3990 20 8 8.3234 -3.7502 0.7787 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6803 -0.8889 23 1 3.8746 -0.6798 0.8911 24 1 3.3965 -3.3029 0.2180 25 1 6.3201 -1.0481 0.9887 26 1 6.2345 -2.5602 1.9237 27 1 9.0593 -0.6703 1.6992 28 1 8.3389 -1.8463 2.8508 29 1 10.6157 -2.6382 2.8082 30 1 10.8317 -2.1855 1.0858 31 1 9.4823 -4.6009 2.2728 32 1 10.2833 -4.4209 0.6882 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063155911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:29 Heat of formation + Delta-G solvation = -122.929021 kcal Electronic energy + Delta-G solvation = -16734.428523 eV Core-core repulsion = 13822.165673 eV Total energy + Delta-G solvation = -2912.262849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.087 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.65675 -36.56377 -35.42008 -34.73611 -32.61288 -32.20334 -31.94697 -27.36968 -26.56010 -22.07244 -22.03012 -21.68777 -18.90522 -17.56918 -17.25534 -16.37125 -16.17280 -15.80072 -15.62543 -14.86485 -14.51054 -13.84168 -13.48373 -13.23822 -13.00170 -12.63278 -12.49580 -12.10252 -11.98724 -11.93025 -11.59483 -11.50597 -11.47110 -11.14331 -10.92361 -10.64294 -10.28592 -9.98216 -9.78121 -9.53710 -8.87426 -8.48264 -6.20429 -4.21764 0.73426 3.20895 3.26574 3.27959 3.37375 3.45362 4.07411 4.22855 4.28965 4.46559 4.56582 4.66457 4.81233 4.95679 5.03821 5.12822 5.28712 5.39816 5.46377 5.50558 5.59436 5.74751 5.84452 6.16719 6.71508 6.80052 6.90405 7.39805 7.86913 8.36513 8.82136 9.37347 10.92164 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.035665 B = 0.006096 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.895448 B = 4591.979779 C = 5063.046930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.874 3.126 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.083 0.917 9 C 0.213 3.787 10 N -1.101 6.101 11 S 2.615 3.385 12 O -0.957 6.957 13 O -0.962 6.962 14 C -0.641 4.641 15 C 0.088 3.912 16 H 0.088 0.912 17 C -0.143 4.143 18 C -0.158 4.158 19 C 0.050 3.950 20 O -0.374 6.374 21 H 0.267 0.733 22 H 0.032 0.968 23 H 0.017 0.983 24 H 0.415 0.585 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.015 -2.217 5.610 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.570 4.570 8 H 0.101 0.899 9 C 0.088 3.912 10 N -0.863 5.863 11 S 2.705 3.295 12 O -0.947 6.947 13 O -0.952 6.952 14 C -0.768 4.768 15 C 0.029 3.971 16 H 0.106 0.894 17 C -0.181 4.181 18 C -0.196 4.196 19 C -0.026 4.026 20 O -0.293 6.293 21 H 0.077 0.923 22 H 0.049 0.951 23 H 0.034 0.966 24 H 0.250 0.750 25 H 0.161 0.839 26 H 0.157 0.843 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.148 -2.571 4.745 19.894 hybrid contribution 0.180 1.251 0.907 1.556 sum 19.328 -1.319 5.653 20.181 Atomic orbital electron populations 1.69878 1.06181 1.27301 1.49610 1.24878 0.94843 0.99057 0.94217 0.86879 0.80261 0.83653 0.79130 1.19580 1.20812 1.18928 1.21060 0.88154 0.95257 1.52491 0.89941 1.19465 0.97895 0.77826 0.95988 1.55370 1.26428 1.16547 1.87906 1.04700 0.74293 0.74421 0.76079 1.93565 1.85758 1.28108 1.87273 1.93570 1.85510 1.76498 1.39671 1.30834 1.07504 1.15362 1.23077 1.22580 0.91674 0.83005 0.99842 0.89425 1.23289 0.95196 1.00524 0.99139 1.23180 0.98083 0.95370 1.02946 1.23159 0.84850 0.96946 0.97692 1.88565 1.36990 1.22690 1.81091 0.92276 0.95053 0.96554 0.75040 0.83866 0.84274 0.89318 0.89685 0.89755 0.90262 0.90926 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.96 55.43 0.77 -25.63 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 20.37 27.47 -169.99 -4.67 15.70 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 7 C -0.53 -14.50 9.83 -34.44 -0.34 -14.84 16 8 H 0.08 2.41 7.90 -52.49 -0.41 1.99 16 9 C 0.21 4.88 4.95 -5.19 -0.03 4.86 16 10 N -1.10 -21.91 5.88 -11.66 -0.07 -21.98 16 11 S 2.61 47.30 5.30 -107.50 -0.57 46.73 16 12 O -0.96 -19.36 17.57 -60.28 -1.06 -20.42 16 13 O -0.96 -20.30 17.50 -57.54 -1.01 -21.31 16 14 C -0.64 -8.63 5.82 37.15 0.22 -8.41 16 15 C 0.09 1.10 3.46 -25.71 -0.09 1.01 16 16 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 17 C -0.14 -1.30 6.58 -24.42 -0.16 -1.46 16 18 C -0.16 -1.21 7.02 -24.72 -0.17 -1.38 16 19 C 0.05 0.49 7.80 37.88 0.30 0.79 16 20 O -0.37 -5.28 10.31 -36.95 -0.38 -5.66 16 21 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.03 0.74 7.12 -51.93 -0.37 0.37 16 23 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 24 H 0.41 7.92 8.50 -34.47 -0.29 7.63 16 25 H 0.14 1.69 8.14 -51.92 -0.42 1.27 16 26 H 0.14 1.65 8.14 -51.92 -0.42 1.23 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.73 8.06 -51.93 -0.42 0.32 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 281.87 15.07 4.25 4.25 Total: -1.00 -34.29 281.87 -7.52 -41.82 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.42 Total: 3.98 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -0.37 Total: -17.48 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.71 Total: -47.61 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -2.45 Total: -47.39 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Atomic # 16 Polarization: 47.30 SS G_CDS: -0.57 Total: 46.73 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.29 -7.52 -41.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063155911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.113 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds