Wall clock time and date at job start Thu Apr 9 2020 12:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 S 1.65600 * 119.99728 * 164.99627 * 10 9 7 12 12 O 1.42110 * 104.27500 * 181.07030 * 11 10 9 13 13 O 1.42095 * 104.28107 * 308.92662 * 11 10 9 14 14 C 1.81401 * 104.45089 * 65.00161 * 11 10 9 15 15 C 1.52994 * 109.47446 * 179.97438 * 14 11 10 16 16 H 1.09003 * 110.27300 * 59.29993 * 15 14 11 17 17 C 1.54943 * 110.31000 * 181.38955 * 15 14 11 18 18 C 1.55416 * 100.89398 * 155.28612 * 17 15 14 19 19 C 1.54382 * 102.31149 * 325.99251 * 18 17 15 20 20 O 1.43246 * 107.58428 * 21.28205 * 19 18 17 21 21 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 0.96998 * 120.00106 * 344.99857 * 10 9 7 25 25 H 1.09002 * 109.47012 * 300.00005 * 14 11 10 26 26 H 1.09001 * 109.47013 * 59.99160 * 14 11 10 27 27 H 1.08997 * 111.12860 * 273.27898 * 17 15 14 28 28 H 1.08996 * 111.12497 * 37.44264 * 17 15 14 29 29 H 1.08995 * 110.88389 * 207.75055 * 18 17 15 30 30 H 1.09006 * 110.93157 * 84.25216 * 18 17 15 31 31 H 1.08994 * 109.83090 * 261.77019 * 19 18 17 32 32 H 1.09001 * 109.83289 * 140.79168 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5751 0.0010 11 16 5.5821 -2.8939 -0.3697 12 8 5.6811 -4.3095 -0.2952 13 8 5.8001 -2.2078 -1.5948 14 6 6.5263 -2.1183 0.9710 15 6 8.0214 -2.3464 0.7401 16 1 8.3253 -1.9201 -0.2160 17 6 8.8453 -1.7212 1.8938 18 6 10.1392 -2.5797 1.8296 19 6 9.5975 -3.9598 1.3990 20 8 8.3234 -3.7502 0.7787 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6803 -0.8889 23 1 3.8746 -0.6798 0.8911 24 1 3.3965 -3.3029 0.2180 25 1 6.3201 -1.0481 0.9887 26 1 6.2345 -2.5602 1.9237 27 1 9.0593 -0.6703 1.6992 28 1 8.3389 -1.8463 2.8508 29 1 10.6157 -2.6382 2.8082 30 1 10.8317 -2.1855 1.0858 31 1 9.4823 -4.6009 2.2728 32 1 10.2833 -4.4209 0.6882 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063155911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:29 Heat of formation + Delta-G solvation = -151.386500 kcal Electronic energy + Delta-G solvation = -16735.662532 eV Core-core repulsion = 13822.165673 eV Total energy + Delta-G solvation = -2913.496858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.087 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.48025 -38.09833 -36.95350 -36.48927 -34.22641 -33.49660 -32.74134 -29.30335 -27.42879 -23.97650 -22.77238 -22.52626 -20.41827 -19.29469 -18.17233 -17.95874 -17.40635 -17.26687 -16.74551 -16.27918 -15.72180 -15.28874 -14.79747 -14.57240 -14.43283 -13.98585 -13.68020 -13.60765 -13.13657 -13.03193 -13.00795 -12.71922 -12.70554 -12.37957 -12.19002 -11.82310 -11.74983 -11.62867 -11.48340 -10.86850 -10.63059 -10.17651 -8.31969 -6.39888 -0.65800 1.39165 1.43462 1.51440 1.89763 2.35174 2.63212 2.84002 3.03019 3.29969 3.40887 3.66069 3.89346 3.99924 4.11590 4.31363 4.38843 4.43156 4.58430 4.83352 4.86973 4.93740 5.02539 5.03590 5.08770 5.24101 5.43461 5.91242 6.19755 6.26761 6.66673 7.23835 8.84115 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.035665 B = 0.006096 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.895448 B = 4591.979779 C = 5063.046930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.011 3.989 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.225 1.225 7 C -0.545 4.545 8 H 0.042 0.958 9 C 0.217 3.783 10 N -1.110 6.110 11 S 2.612 3.388 12 O -0.987 6.987 13 O -1.001 7.001 14 C -0.611 4.611 15 C 0.071 3.929 16 H 0.090 0.910 17 C -0.138 4.138 18 C -0.150 4.150 19 C 0.035 3.965 20 O -0.410 6.410 21 H 0.270 0.730 22 H 0.029 0.971 23 H 0.049 0.951 24 H 0.414 0.586 25 H 0.171 0.829 26 H 0.161 0.839 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.008 -0.368 7.277 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.187 4.187 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.148 1.148 7 C -0.584 4.584 8 H 0.061 0.939 9 C 0.091 3.909 10 N -0.869 5.869 11 S 2.709 3.291 12 O -0.977 6.977 13 O -0.991 6.991 14 C -0.744 4.744 15 C 0.012 3.988 16 H 0.108 0.892 17 C -0.176 4.176 18 C -0.187 4.187 19 C -0.040 4.040 20 O -0.331 6.331 21 H 0.079 0.921 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.248 0.752 25 H 0.189 0.811 26 H 0.179 0.821 27 H 0.128 0.872 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 22.124 -0.771 6.374 23.037 hybrid contribution -0.725 0.550 0.404 0.996 sum 21.399 -0.222 6.778 22.448 Atomic orbital electron populations 1.70038 1.08360 1.28597 1.51256 1.25903 0.95722 1.03536 0.93583 0.85836 0.80463 0.77982 0.79611 1.19463 1.20332 1.14758 1.21380 0.90827 0.94016 1.52200 0.93934 1.19342 0.94825 0.79580 0.97155 1.55320 1.27716 1.15469 1.88388 1.04593 0.73850 0.73923 0.76781 1.93524 1.85920 1.30219 1.88056 1.93515 1.85723 1.76710 1.43151 1.30588 1.07203 1.16316 1.20298 1.22878 0.91036 0.83101 1.01775 0.89218 1.23338 0.94948 1.01582 0.97759 1.23194 0.97706 0.93344 1.04474 1.23444 0.83705 0.98815 0.98084 1.88541 1.39020 1.23714 1.81782 0.92088 0.95283 0.93295 0.75212 0.81135 0.82112 0.87244 0.88900 0.87516 0.89196 0.90196 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.19 13.96 21.44 0.30 -56.89 16 2 C 0.01 0.64 5.47 84.65 0.46 1.10 16 3 Si 0.94 40.54 27.47 68.60 1.88 42.43 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.23 -8.23 6.54 99.48 0.65 -7.58 16 7 C -0.55 -30.26 9.83 25.60 0.25 -30.01 16 8 H 0.04 2.61 7.90 -2.91 -0.02 2.59 16 9 C 0.22 9.62 4.95 85.64 0.42 10.05 16 10 N -1.11 -43.90 5.88 -190.79 -1.12 -45.02 16 11 S 2.61 92.64 5.30 -56.49 -0.30 92.34 16 12 O -0.99 -40.30 17.57 -125.03 -2.20 -42.49 16 13 O -1.00 -41.99 17.50 -127.65 -2.23 -44.22 16 14 C -0.61 -14.40 5.82 71.98 0.42 -13.98 16 15 C 0.07 1.56 3.46 31.26 0.11 1.67 16 16 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 17 C -0.14 -1.87 6.58 32.09 0.21 -1.66 16 18 C -0.15 -1.69 7.02 31.89 0.22 -1.46 16 19 C 0.04 0.61 7.80 72.45 0.56 1.18 16 20 O -0.41 -10.87 10.31 -147.33 -1.52 -12.39 16 21 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 22 H 0.03 1.31 7.12 -2.39 -0.02 1.30 16 23 H 0.05 1.87 7.20 -2.39 -0.02 1.86 16 24 H 0.41 16.28 8.50 -96.75 -0.82 15.46 16 25 H 0.17 3.15 8.14 -2.39 -0.02 3.13 16 26 H 0.16 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.14 8.06 -2.39 -0.02 1.12 16 29 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -76.62 281.87 -2.28 -78.90 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.24 Total: 20.46 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 2.67 Total: -33.12 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -0.82 Total: -101.91 kcal Atomic # 8 Polarization: -93.16 SS G_CDS: -5.95 Total: -99.11 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.88 Total: 42.43 kcal Atomic # 16 Polarization: 92.64 SS G_CDS: -0.30 Total: 92.34 kcal Total: -76.62 -2.28 -78.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063155911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.482 kcal (2) G-P(sol) polarization free energy of solvation -76.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds