Wall clock time and date at job start Thu Apr 9 2020 12:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36935 * 120.00392 * 2 1 4 4 H 1.08001 * 120.00200 * 202.34858 * 3 2 1 5 5 C 1.38813 * 119.99544 * 22.35043 * 3 2 1 6 6 N 1.31611 * 120.00067 * 11.33745 * 5 3 2 7 7 Si 1.86803 * 119.99570 * 191.33498 * 5 3 2 8 8 H 1.48504 * 109.47148 * 60.00455 * 7 5 3 9 9 H 1.48500 * 109.46817 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47324 * 299.99899 * 7 5 3 11 11 C 1.46501 * 119.99600 * 180.02562 * 2 1 3 12 12 C 1.50696 * 109.47042 * 269.99581 * 11 2 1 13 13 N 1.30360 * 126.15629 * 89.68951 * 12 11 2 14 14 N 1.28666 * 109.57859 * 179.86033 * 13 12 11 15 15 C 1.31537 * 109.22369 * 0.41143 * 14 13 12 16 16 C 1.47023 * 126.41096 * 179.73123 * 15 14 13 17 17 C 1.36303 * 125.96576 * 0.02562 * 16 15 14 18 18 C 1.40733 * 106.71925 * 179.97438 * 17 16 15 19 19 C 1.34862 * 107.08159 * 0.02562 * 18 17 16 20 20 O 1.34235 * 108.72659 * 359.76910 * 19 18 17 21 21 O 1.34520 * 126.16252 * 269.99920 * 12 11 2 22 22 H 1.08995 * 109.47539 * 274.21586 * 1 2 3 23 23 H 1.09005 * 109.47405 * 34.21349 * 1 2 3 24 24 H 1.08998 * 109.47710 * 154.21270 * 1 2 3 25 25 H 0.97005 * 119.99945 * 180.02562 * 6 5 3 26 26 H 1.09007 * 109.47624 * 29.99925 * 11 2 1 27 27 H 1.09005 * 109.47309 * 149.99572 * 11 2 1 28 28 H 1.07997 * 126.64008 * 0.02562 * 17 16 15 29 29 H 1.07999 * 126.45782 * 179.97438 * 18 17 16 30 30 H 1.08000 * 125.63515 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5338 2.3428 0.4572 6 7 0.3842 2.2690 1.0936 7 14 2.3369 4.0046 0.1691 8 1 2.4919 4.2333 -1.2901 9 1 1.4847 5.0734 0.7493 10 1 3.6722 4.0284 0.8184 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7044 1.4200 13 7 1.6626 -2.4483 2.1468 14 7 2.1884 -2.6252 3.3077 15 6 3.3366 -1.9861 3.3651 16 6 4.2477 -1.9303 4.5176 17 6 4.0516 -2.5356 5.7230 18 6 5.1663 -2.2185 6.5214 19 6 5.9802 -1.4437 5.7756 20 8 5.4249 -1.2756 4.5651 21 8 3.5215 -1.3909 2.1685 22 1 -0.3634 0.0755 1.0248 23 1 -0.3634 0.8498 -0.5778 24 1 -0.3634 -0.9253 -0.4470 25 1 -0.0463 3.0775 1.4127 26 1 1.6083 -2.0283 -0.5147 27 1 3.1498 -1.1383 -0.5144 28 1 3.2052 -3.1420 6.0097 29 1 5.3374 -2.5351 7.5397 30 1 6.9242 -1.0299 6.0979 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972914.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:37 Heat of formation + Delta-G solvation = 85.850953 kcal Electronic energy + Delta-G solvation = -17598.858218 eV Core-core repulsion = 14592.497548 eV Total energy + Delta-G solvation = -3006.360670 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.41153 -42.54826 -35.96435 -35.47367 -33.27435 -32.36346 -31.23857 -29.04026 -26.67666 -25.97827 -23.71340 -22.74758 -21.57442 -20.86026 -20.79915 -18.26277 -17.09207 -16.74025 -16.26252 -15.87389 -15.29130 -15.01631 -14.23319 -13.71302 -13.41096 -13.18664 -12.97004 -12.70247 -12.00923 -11.77565 -11.62996 -11.27518 -11.05443 -10.90442 -10.62368 -10.49226 -10.25381 -10.21592 -10.10090 -9.71379 -8.80716 -8.11539 -7.18069 -6.00611 -3.48395 0.90471 2.10592 2.42222 2.58965 2.99356 3.15005 3.28440 3.32118 3.33403 4.29661 4.43302 4.85439 4.86607 5.11650 5.23972 5.33582 5.35450 5.66485 5.75651 5.89287 5.97499 6.11932 6.16804 6.33252 6.38910 6.62610 6.94054 7.19821 7.55153 7.62232 8.08165 8.87153 8.92792 9.50118 9.96806 11.02173 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.006613 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.330142 B = 4232.833980 C = 5003.308918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.155 3.845 2 N -0.567 5.567 3 C -0.275 4.275 4 H 0.079 0.921 5 C 0.012 3.988 6 N -0.893 5.893 7 Si 0.915 3.085 8 H -0.278 1.278 9 H -0.287 1.287 10 H -0.279 1.279 11 C 0.221 3.779 12 C 0.187 3.813 13 N -0.309 5.309 14 N -0.254 5.254 15 C 0.191 3.809 16 C 0.065 3.935 17 C -0.143 4.143 18 C -0.215 4.215 19 C -0.019 4.019 20 O -0.163 6.163 21 O -0.213 6.213 22 H 0.034 0.966 23 H 0.056 0.944 24 H 0.011 0.989 25 H 0.260 0.740 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.685 -7.275 5.740 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.286 5.286 3 C -0.405 4.405 4 H 0.097 0.903 5 C -0.189 4.189 6 N -0.534 5.534 7 Si 0.743 3.257 8 H -0.204 1.204 9 H -0.213 1.213 10 H -0.205 1.205 11 C 0.089 3.911 12 C -0.026 4.026 13 N -0.157 5.157 14 N -0.105 5.105 15 C -0.017 4.017 16 C 0.014 3.986 17 C -0.164 4.164 18 C -0.234 4.234 19 C -0.089 4.089 20 O -0.058 6.058 21 O -0.092 6.092 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.180 0.820 29 H 0.175 0.825 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.616 -7.609 5.824 12.240 hybrid contribution 1.290 1.736 0.181 2.171 sum 8.906 -5.873 6.005 12.242 Atomic orbital electron populations 1.21015 0.80880 0.96770 1.00203 1.44555 1.02935 1.00072 1.81002 1.19364 0.99037 0.84520 1.37550 0.90333 1.25242 0.97363 0.99380 0.96959 1.70086 1.17261 1.28206 1.37859 0.86176 0.78701 0.82499 0.78287 1.20356 1.21264 1.20515 1.20293 0.98608 0.89917 0.82321 1.31638 0.79909 0.90540 1.00507 1.74334 1.25194 1.18358 0.97848 1.74664 1.03748 1.18438 1.13682 1.23516 0.95246 0.97689 0.85295 1.17975 0.86439 1.02165 0.92069 1.21789 1.00887 1.02627 0.91105 1.21784 0.95623 1.04041 1.01977 1.24293 1.00235 1.01976 0.82353 1.84147 1.29098 1.58425 1.34097 1.85061 1.43093 1.59196 1.21807 0.94719 0.92579 0.97080 0.92972 0.88581 0.89967 0.81961 0.82466 0.77280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.76 9.01 59.84 0.54 4.30 16 2 N -0.57 -13.96 2.91 -182.50 -0.53 -14.49 16 3 C -0.28 -7.35 9.67 -15.06 -0.15 -7.49 16 4 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 5 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 6 N -0.89 -25.62 10.58 55.49 0.59 -25.03 16 7 Si 0.92 21.29 29.57 -169.99 -5.03 16.26 16 8 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 C 0.22 4.49 6.33 -5.19 -0.03 4.46 16 12 C 0.19 4.15 8.05 -12.90 -0.10 4.05 16 13 N -0.31 -7.05 12.21 32.59 0.40 -6.66 16 14 N -0.25 -5.57 12.25 31.94 0.39 -5.18 16 15 C 0.19 4.01 8.28 -14.12 -0.12 3.89 16 16 C 0.06 1.14 7.24 -36.72 -0.27 0.87 16 17 C -0.14 -2.01 10.83 -39.34 -0.43 -2.44 16 18 C -0.22 -2.35 10.88 -39.84 -0.43 -2.79 16 19 C -0.02 -0.21 12.08 29.53 0.36 0.15 16 20 O -0.16 -2.61 10.67 4.53 0.05 -2.57 16 21 O -0.21 -4.84 10.90 3.40 0.04 -4.80 16 22 H 0.03 0.94 7.42 -51.93 -0.39 0.55 16 23 H 0.06 1.42 7.19 -51.93 -0.37 1.05 16 24 H 0.01 0.22 7.84 -51.93 -0.41 -0.18 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.10 1.66 7.86 -51.92 -0.41 1.25 16 27 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 28 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 29 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 276.59 15.07 4.17 4.17 Total: -1.00 -32.35 276.59 -3.45 -35.80 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -2.81 Total: -2.73 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.72 Total: 5.23 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.85 Total: -51.35 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.37 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.35 -3.45 -35.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972914.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.647 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds