Wall clock time and date at job start Thu Apr 9 2020 12:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99590 * 294.29666 * 10 9 7 12 12 C 1.53240 * 109.33953 * 172.74375 * 11 10 9 13 13 N 1.47081 * 108.51861 * 53.83314 * 12 11 10 14 14 S 1.65605 * 120.88220 * 128.83544 * 13 12 11 15 15 N 1.65601 * 107.21717 * 269.97892 * 14 13 12 16 16 O 1.42095 * 106.39885 * 23.51760 * 14 13 12 17 17 O 1.42102 * 106.40215 * 156.44098 * 14 13 12 18 18 C 1.47086 * 118.23762 * 308.81698 * 13 12 11 19 19 C 1.46901 * 110.99992 * 169.99976 * 10 9 7 20 20 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 22 22 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 23 23 H 1.08997 * 109.49497 * 292.70952 * 11 10 9 24 24 H 1.09001 * 109.49495 * 52.79205 * 11 10 9 25 25 H 1.08995 * 109.63347 * 294.12732 * 12 11 10 26 26 H 1.08996 * 109.63068 * 173.54254 * 12 11 10 27 27 H 0.97005 * 120.00017 * 359.97438 * 15 14 13 28 28 H 0.96995 * 119.99949 * 180.02562 * 15 14 13 29 29 H 1.09002 * 109.62302 * 291.47027 * 18 13 12 30 30 H 1.09004 * 109.62910 * 170.89746 * 18 13 12 31 31 H 1.09004 * 109.49356 * 307.20898 * 19 10 9 32 32 H 1.09001 * 109.49423 * 67.29219 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2058 -3.6156 0.0180 11 6 2.9768 -3.6554 -1.2318 12 6 4.0791 -4.7134 -1.1146 13 7 3.4619 -5.9899 -0.7238 14 16 3.7698 -7.3781 -1.5727 15 7 2.6302 -7.4838 -2.7695 16 8 5.0179 -7.1820 -2.2231 17 8 3.5182 -8.4569 -0.6826 18 6 2.5640 -6.0009 0.4412 19 6 1.5214 -4.8922 0.2628 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5524 0.9029 22 1 0.6241 -2.5613 -0.8770 23 1 2.3149 -3.9098 -2.0595 24 1 3.4273 -2.6794 -1.4125 25 1 4.8004 -4.4083 -0.3565 26 1 4.5803 -4.8280 -2.0757 27 1 1.9535 -6.7944 -2.8571 28 1 2.6389 -8.2355 -3.3824 29 1 3.1398 -5.8196 1.3488 30 1 2.0635 -6.9669 0.5087 31 1 0.9163 -4.8132 1.1660 32 1 0.8798 -5.1294 -0.5859 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073604577.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:40 Heat of formation + Delta-G solvation = -71.957608 kcal Electronic energy + Delta-G solvation = -17078.943852 eV Core-core repulsion = 14201.184041 eV Total energy + Delta-G solvation = -2877.759812 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.55325 -37.21320 -35.85725 -34.68374 -33.23346 -32.52090 -30.93062 -27.66382 -24.86920 -23.46756 -22.08423 -20.51306 -19.18866 -18.16289 -17.54930 -16.86966 -16.20402 -16.01267 -14.76887 -14.58269 -14.49375 -14.04166 -13.77754 -13.71065 -12.68735 -12.41282 -12.20501 -12.13098 -11.93917 -11.76096 -11.43535 -11.20406 -11.06306 -10.78447 -10.60954 -10.56365 -10.34629 -10.13534 -9.19517 -8.69673 -8.44603 -7.48281 -6.44300 -4.14253 0.55378 2.83256 3.41103 3.43490 3.50165 3.59399 4.43915 4.54102 4.59539 4.72516 5.24242 5.32976 5.38924 5.46938 5.55833 5.65426 5.81251 5.91491 6.06293 6.15185 6.30880 6.35008 6.59617 6.88019 6.92729 6.96529 7.65785 7.83559 8.20663 8.49228 8.78579 9.56728 10.94799 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.048471 B = 0.005423 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.520472 B = 5161.767853 C = 5389.324081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.075 2.925 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.591 4.591 8 H 0.059 0.941 9 C 0.183 3.817 10 N -0.527 5.527 11 C 0.051 3.949 12 C 0.124 3.876 13 N -1.000 6.000 14 S 2.796 3.204 15 N -1.266 6.266 16 O -0.986 6.986 17 O -0.988 6.988 18 C 0.127 3.873 19 C 0.038 3.962 20 H 0.267 0.733 21 H 0.022 0.978 22 H -0.019 1.019 23 H 0.023 0.977 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.415 0.585 28 H 0.416 0.584 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 -12.716 -4.165 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.903 3.097 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.629 4.629 8 H 0.077 0.923 9 C 0.058 3.942 10 N -0.252 5.252 11 C -0.079 4.079 12 C -0.001 4.001 13 N -0.843 5.843 14 S 2.802 3.198 15 N -0.939 5.939 16 O -0.968 6.968 17 O -0.970 6.970 18 C 0.002 3.998 19 C -0.092 4.092 20 H 0.077 0.923 21 H 0.040 0.960 22 H -0.002 1.002 23 H 0.041 0.959 24 H 0.117 0.883 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.242 0.758 28 H 0.244 0.756 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 5.190 -11.635 -3.463 13.203 hybrid contribution -1.140 -1.556 -1.028 2.186 sum 4.051 -13.191 -4.492 14.512 Atomic orbital electron populations 1.70781 1.06935 1.30404 1.46861 1.25859 0.96455 1.02775 0.93797 0.83448 0.74558 0.74826 0.76843 1.21390 1.21405 1.21121 1.21984 0.94870 0.90866 1.55219 0.92298 1.19845 0.90628 0.88867 0.94908 1.61902 1.27451 1.02220 1.33609 1.22367 0.95147 0.99579 0.90824 1.21720 0.95748 0.81725 1.00934 1.57777 1.60465 1.24478 1.41612 1.01538 0.73185 0.72234 0.72876 1.53598 1.50825 1.36925 1.52531 1.93615 1.41923 1.85406 1.75894 1.93611 1.85654 1.53099 1.64655 1.21605 0.91278 0.98914 0.87992 1.22454 0.94884 0.91053 1.00795 0.92323 0.96020 1.00174 0.95901 0.88254 0.90080 0.89464 0.75840 0.75563 0.90089 0.89517 0.90048 0.95680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.97 13.65 55.43 0.76 -26.22 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 3 Si 1.08 24.54 29.90 -169.99 -5.08 19.45 16 4 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.59 -15.93 8.41 -34.44 -0.29 -16.22 16 8 H 0.06 1.58 7.13 -52.49 -0.37 1.21 16 9 C 0.18 4.44 4.04 -4.98 -0.02 4.42 16 10 N -0.53 -10.40 4.62 -235.76 -1.09 -11.49 16 11 C 0.05 0.88 5.46 -3.70 -0.02 0.86 16 12 C 0.12 1.77 6.53 -3.60 -0.02 1.75 16 13 N -1.00 -13.35 3.39 -113.23 -0.38 -13.74 16 14 S 2.80 35.45 6.70 -107.50 -0.72 34.73 16 15 N -1.27 -11.44 9.58 60.35 0.58 -10.87 16 16 O -0.99 -15.31 16.92 -57.17 -0.97 -16.28 16 17 O -0.99 -15.07 16.92 -57.17 -0.97 -16.03 16 18 C 0.13 1.71 6.53 -3.60 -0.02 1.69 16 19 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 20 H 0.27 7.82 7.22 -40.82 -0.29 7.53 16 21 H 0.02 0.56 7.84 -51.92 -0.41 0.15 16 22 H -0.02 -0.50 7.99 -51.93 -0.41 -0.91 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.10 1.90 6.67 -51.93 -0.35 1.56 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.09 1.11 7.22 -51.93 -0.37 0.74 16 27 H 0.41 3.29 8.96 -34.47 -0.31 2.98 16 28 H 0.42 2.91 8.96 -34.47 -0.31 2.61 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.09 1.01 7.22 -51.93 -0.37 0.64 16 31 H 0.08 1.26 7.99 -51.93 -0.41 0.85 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -33.77 274.81 -8.34 -42.10 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.11 Total: 0.78 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -0.50 Total: -6.59 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.14 Total: -62.31 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.93 Total: -32.31 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.45 kcal Atomic # 16 Polarization: 35.45 SS G_CDS: -0.72 Total: 34.73 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.77 -8.34 -42.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073604577.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.854 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds