Wall clock time and date at job start Thu Apr 9 2020 12:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 120.00347 * 2 1 4 4 H 1.48506 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47135 * 299.99964 * 3 2 1 6 6 H 1.48501 * 109.46853 * 60.00016 * 3 2 1 7 7 C 1.38952 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00343 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00309 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99723 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00015 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.46850 * 180.02562 * 12 10 9 14 14 C 1.38247 * 119.92634 * 270.01861 * 13 12 10 15 15 C 1.38240 * 120.14459 * 179.75199 * 14 13 12 16 16 C 1.38552 * 120.02633 * 0.42901 * 15 14 13 17 17 C 1.39265 * 119.82706 * 359.57585 * 16 15 14 18 18 C 1.38231 * 119.92969 * 90.00273 * 13 12 10 19 19 O 1.36496 * 108.64230 * 180.24572 * 17 16 15 20 20 C 1.43981 * 105.48444 * 342.72036 * 19 17 16 21 21 O 1.36505 * 131.53353 * 179.87931 * 16 15 14 22 22 H 0.96997 * 119.99669 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00086 * 359.97438 * 9 7 2 24 24 H 1.08993 * 109.46905 * 60.00211 * 12 10 9 25 25 H 1.08998 * 109.46686 * 300.00067 * 12 10 9 26 26 H 1.07994 * 119.93290 * 0.02562 * 14 13 12 27 27 H 1.07997 * 119.99327 * 180.33354 * 15 14 13 28 28 H 1.08003 * 119.98943 * 0.02562 * 18 13 12 29 29 H 1.09007 * 110.56955 * 268.54960 * 20 19 17 30 30 H 1.09003 * 110.57719 * 145.67764 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7083 1.3462 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2435 -4.8630 0.0011 13 6 2.2228 -6.0085 0.0016 14 6 2.6712 -6.5330 -1.1963 15 6 3.5735 -7.5803 -1.2011 16 6 4.0238 -8.1130 -0.0039 17 6 3.5720 -7.5846 1.2028 18 6 2.6709 -6.5322 1.1998 19 8 4.1598 -8.2700 2.2265 20 6 4.6585 -9.4860 1.6386 21 8 4.8947 -9.1295 0.2637 22 1 -0.4849 0.8400 0.0004 23 1 0.3533 -2.3907 0.0005 24 1 0.6166 -4.9209 -0.8886 25 1 0.6172 -4.9204 0.8914 26 1 2.3194 -6.1207 -2.1304 27 1 3.9263 -7.9847 -2.1383 28 1 2.3188 -6.1206 2.1342 29 1 3.9126 -10.2780 1.7062 30 1 5.5875 -9.7914 2.1201 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082536402.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:53 Heat of formation + Delta-G solvation = -75.442142 kcal Electronic energy + Delta-G solvation = -17240.242112 eV Core-core repulsion = 14194.594497 eV Total energy + Delta-G solvation = -3045.647615 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.02403 -38.74593 -37.27738 -36.18128 -33.96072 -31.86563 -31.12785 -30.22815 -27.50005 -25.63078 -24.50239 -22.79022 -21.95005 -19.31483 -17.97441 -17.79571 -17.29191 -17.19753 -16.07750 -15.83549 -14.65216 -14.48955 -14.34655 -14.02039 -13.70249 -13.51946 -13.19594 -12.89216 -12.84565 -12.32120 -11.87901 -11.52549 -11.42310 -11.06004 -10.85656 -10.63598 -10.34312 -10.22592 -9.53328 -8.67262 -8.41743 -7.98213 -7.81226 -6.42874 -3.83669 1.34294 1.44538 2.85030 3.16042 3.26983 3.34426 3.50680 3.74456 3.89091 4.19359 4.62713 4.66307 4.81824 5.01178 5.16249 5.21211 5.27841 5.30889 5.45188 5.65529 5.89574 5.97458 6.16164 6.26530 6.30682 6.45148 6.60058 6.79565 7.27557 7.54877 8.04654 8.59210 9.16704 9.52621 10.03898 10.74765 Molecular weight = 249.08amu Principal moments of inertia in cm(-1) A = 0.048388 B = 0.004378 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.519626 B = 6394.293015 C = 6494.488684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.442 3.558 11 O -0.587 6.587 12 C -0.096 4.096 13 C -0.030 4.030 14 C -0.097 4.097 15 C -0.098 4.098 16 C 0.016 3.984 17 C 0.029 3.971 18 C -0.086 4.086 19 O -0.311 6.311 20 C 0.214 3.786 21 O -0.314 6.314 22 H 0.271 0.729 23 H 0.393 0.607 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.079 0.921 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.465 -15.819 0.467 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.228 3.772 11 O -0.471 6.471 12 C -0.136 4.136 13 C -0.031 4.031 14 C -0.115 4.115 15 C -0.116 4.116 16 C -0.027 4.027 17 C -0.015 4.015 18 C -0.105 4.105 19 O -0.228 6.228 20 C 0.102 3.898 21 O -0.230 6.230 22 H 0.081 0.919 23 H 0.227 0.773 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.154 0.846 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.097 0.903 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.346 -15.711 0.574 15.896 hybrid contribution -0.075 0.707 0.179 0.734 sum 2.271 -15.004 0.753 15.193 Atomic orbital electron populations 1.69617 1.05933 1.28089 1.50592 1.25259 0.95626 0.99716 0.97270 0.85811 0.79748 0.81140 0.77725 1.19217 1.20722 1.20735 1.19773 0.93430 0.82234 1.47492 0.87861 1.41887 1.09238 1.04559 1.64133 1.19728 0.88269 0.84537 0.84708 1.90561 1.13796 1.87181 1.55607 1.20577 0.96947 0.91871 1.04218 1.19136 0.97306 0.94805 0.91809 1.20779 0.97203 0.95189 0.98319 1.19964 0.98632 0.98226 0.94814 1.19721 0.94536 0.93340 0.95148 1.19668 0.98362 0.98346 0.85084 1.19887 0.96199 0.95081 0.99284 1.87341 1.71527 1.32159 1.31744 1.25528 1.00218 0.87295 0.76789 1.87314 1.55925 1.50585 1.29192 0.91897 0.77343 0.88871 0.89098 0.84582 0.85036 0.84958 0.90327 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 10 C 0.44 10.23 7.78 -10.98 -0.09 10.14 16 11 O -0.59 -15.94 15.61 5.55 0.09 -15.85 16 12 C -0.10 -1.61 5.83 -29.03 -0.17 -1.77 16 13 C -0.03 -0.50 4.37 -104.62 -0.46 -0.95 16 14 C -0.10 -1.47 9.69 -39.58 -0.38 -1.85 16 15 C -0.10 -1.42 10.06 -39.46 -0.40 -1.81 16 16 C 0.02 0.26 7.15 -39.08 -0.28 -0.02 16 17 C 0.03 0.48 7.15 -39.08 -0.28 0.20 16 18 C -0.09 -1.43 9.71 -39.47 -0.38 -1.81 16 19 O -0.31 -4.66 11.40 -45.68 -0.52 -5.18 16 20 C 0.21 2.34 8.89 101.05 0.90 3.24 16 21 O -0.31 -4.45 11.40 -45.70 -0.52 -4.97 16 22 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 23 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 24 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 25 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 26 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 273.42 15.07 4.12 4.12 Total: -1.00 -32.87 273.42 -5.76 -38.63 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -2.79 Total: 7.50 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.78 Total: -2.59 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.67 Total: -37.61 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.96 Total: -26.00 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.87 -5.76 -38.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082536402.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.812 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds