Wall clock time and date at job start Thu Apr 9 2020 12:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00003 * 2 1 4 4 H 1.48508 * 109.46894 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47177 * 299.99869 * 3 2 1 6 6 H 1.48496 * 109.47413 * 60.00450 * 3 2 1 7 7 C 1.37879 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00180 * 179.97438 * 7 2 1 9 9 S 1.76209 * 120.00156 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.39943 * 66.45990 * 9 7 2 11 11 O 1.42099 * 106.40103 * 293.54207 * 9 7 2 12 12 N 1.65591 * 107.21745 * 180.02562 * 9 7 2 13 13 C 1.46496 * 120.00222 * 65.00326 * 12 9 7 14 14 C 1.52998 * 109.47748 * 164.99657 * 13 12 9 15 15 C 1.53175 * 109.54388 * 294.55931 * 14 13 12 16 16 C 1.53094 * 109.16661 * 183.14993 * 15 14 13 17 17 O 1.42898 * 109.41211 * 57.60371 * 16 15 14 18 18 C 1.42897 * 114.10001 * 298.84343 * 17 16 15 19 19 C 1.53089 * 109.41656 * 61.16248 * 18 17 16 20 20 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 21 21 H 0.97007 * 120.00302 * 244.99555 * 12 9 7 22 22 H 1.09002 * 109.47271 * 44.99758 * 13 12 9 23 23 H 1.09007 * 109.47188 * 284.99561 * 13 12 9 24 24 H 1.09004 * 109.61242 * 54.77350 * 14 13 12 25 25 H 1.09004 * 109.52259 * 303.05258 * 15 14 13 26 26 H 1.09006 * 109.52330 * 63.24092 * 15 14 13 27 27 H 1.09006 * 109.47665 * 297.62062 * 16 15 14 28 28 H 1.08993 * 109.47955 * 177.58818 * 16 15 14 29 29 H 1.09002 * 109.48425 * 301.17758 * 18 17 16 30 30 H 1.09001 * 109.49443 * 181.15303 * 18 17 16 31 31 H 1.08997 * 109.52675 * 182.48845 * 19 18 17 32 32 H 1.08995 * 109.52428 * 62.29514 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1235 -2.7201 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4518 -2.7956 1.2494 12 7 2.2482 -3.9354 -0.0005 13 6 3.1392 -4.1089 1.1493 14 6 3.8045 -5.4847 1.0761 15 6 2.7418 -6.5768 1.2318 16 6 3.4256 -7.9466 1.2362 17 8 4.3873 -7.9939 2.2921 18 6 5.4320 -7.0262 2.1736 19 6 4.8289 -5.6195 2.2069 20 1 -0.4850 0.8400 -0.0004 21 1 2.3171 -4.5326 -0.7619 22 1 2.5621 -4.0331 2.0709 23 1 3.9054 -3.3337 1.1355 24 1 4.3056 -5.5981 0.1147 25 1 2.2072 -6.4336 2.1709 26 1 2.0395 -6.5229 0.3999 27 1 3.9261 -8.1060 0.2811 28 1 2.6785 -8.7252 1.3898 29 1 5.9589 -7.1735 1.2308 30 1 6.1307 -7.1418 3.0022 31 1 5.6192 -4.8810 2.0724 32 1 4.3365 -5.4569 3.1656 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082545647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:55 Heat of formation + Delta-G solvation = -157.956161 kcal Electronic energy + Delta-G solvation = -16843.834139 eV Core-core repulsion = 13930.052399 eV Total energy + Delta-G solvation = -2913.781740 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43844 -35.82877 -35.11892 -33.92948 -33.09781 -32.20792 -31.08228 -26.55838 -26.12069 -23.55629 -22.45594 -20.12533 -18.92785 -17.40738 -16.42381 -16.07396 -15.87165 -15.33218 -14.89631 -14.77978 -14.61373 -13.95385 -13.61174 -13.12739 -12.71454 -12.38470 -12.16151 -11.99139 -11.33735 -11.25385 -11.23708 -10.91226 -10.68784 -10.58929 -10.43046 -10.27083 -10.17823 -10.15155 -9.51004 -9.25541 -8.99112 -8.45263 -6.69751 -5.31264 2.36834 3.05269 3.13697 3.20555 3.83112 4.06504 4.61565 4.65444 4.74527 4.82579 4.92500 5.03655 5.19040 5.35640 5.43790 5.60670 5.66656 5.73401 5.78722 5.85685 5.99405 6.09511 6.16276 6.24134 6.39505 6.57539 6.86131 7.13613 7.32673 7.91366 7.99171 8.89671 10.24433 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.038990 B = 0.005985 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.955748 B = 4676.895741 C = 5139.431597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.716 3.284 10 O -1.009 7.009 11 O -1.007 7.007 12 N -1.137 6.137 13 C 0.133 3.867 14 C -0.096 4.096 15 C -0.153 4.153 16 C 0.061 3.939 17 O -0.387 6.387 18 C 0.062 3.938 19 C -0.152 4.152 20 H 0.290 0.710 21 H 0.400 0.600 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.204 -10.355 2.399 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.816 3.184 10 O -0.999 6.999 11 O -0.997 6.997 12 N -0.892 5.892 13 C 0.006 3.994 14 C -0.116 4.116 15 C -0.191 4.191 16 C -0.016 4.016 17 O -0.305 6.305 18 C -0.014 4.014 19 C -0.190 4.190 20 H 0.100 0.900 21 H 0.231 0.769 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.052 -10.418 2.731 14.069 hybrid contribution 1.036 1.272 -0.618 1.753 sum 10.088 -9.146 2.113 13.780 Atomic orbital electron populations 1.69907 1.06781 1.30598 1.40241 1.24755 0.94460 1.00854 0.88524 0.86134 0.80402 0.80463 0.78547 1.18678 1.19628 1.19618 1.30588 1.06095 1.11964 1.66707 0.88008 1.00352 0.72074 0.73240 0.72776 1.93371 1.73148 1.87693 1.45681 1.93355 1.72906 1.87526 1.45932 1.55963 1.55885 1.51012 1.26328 1.21074 0.93279 0.95480 0.89588 1.21425 0.95968 0.95211 0.99029 1.22272 0.98526 0.94380 1.03927 1.22610 0.91302 0.97486 0.90180 1.87906 1.38094 1.56130 1.48408 1.22555 0.89508 0.87854 1.01528 1.22219 0.99293 0.97659 0.99863 0.89962 0.76920 0.90668 0.92186 0.90650 0.90523 0.90376 0.93370 0.89000 0.93375 0.89036 0.90486 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.95 13.19 55.43 0.73 -24.22 16 2 C 0.13 3.68 5.46 -17.82 -0.10 3.59 16 3 Si 0.92 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -1.02 -27.94 9.72 30.60 0.30 -27.64 16 8 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 9 S 2.72 71.37 5.02 -107.50 -0.54 70.83 16 10 O -1.01 -29.47 18.02 -57.17 -1.03 -30.50 16 11 O -1.01 -29.28 17.49 -57.17 -1.00 -30.28 16 12 N -1.14 -21.90 5.58 -10.61 -0.06 -21.96 16 13 C 0.13 2.19 5.62 -4.05 -0.02 2.17 16 14 C -0.10 -1.23 2.30 -90.44 -0.21 -1.43 16 15 C -0.15 -1.93 5.27 -26.59 -0.14 -2.07 16 16 C 0.06 0.67 6.84 37.21 0.25 0.92 16 17 O -0.39 -4.73 10.76 -35.23 -0.38 -5.11 16 18 C 0.06 0.63 6.84 37.20 0.25 0.88 16 19 C -0.15 -1.65 5.42 -26.59 -0.14 -1.80 16 20 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 21 H 0.40 6.63 8.42 -34.47 -0.29 6.34 16 22 H 0.08 1.33 7.75 -51.93 -0.40 0.93 16 23 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.08 0.99 7.67 -51.93 -0.40 0.59 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 281.65 15.07 4.24 4.24 Total: -1.00 -35.10 281.65 -7.30 -42.40 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.44 Total: 4.45 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 0.19 Total: -25.40 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.67 Total: -46.18 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -2.41 Total: -65.89 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 71.37 SS G_CDS: -0.54 Total: 70.83 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -35.10 -7.30 -42.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082545647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.553 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds