Wall clock time and date at job start Thu Apr 9 2020 12:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86803 * 119.99496 * 2 1 4 4 H 1.48498 * 109.47287 * 275.98320 * 3 2 1 5 5 H 1.48495 * 109.47496 * 35.98809 * 3 2 1 6 6 H 1.48504 * 109.46566 * 155.98605 * 3 2 1 7 7 C 1.38942 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00271 * 338.58548 * 7 2 1 9 9 N 1.37098 * 119.99925 * 158.58444 * 7 2 1 10 10 C 1.46499 * 120.00146 * 322.20250 * 9 7 2 11 11 C 1.50703 * 109.47020 * 263.20486 * 10 9 7 12 12 O 1.20823 * 120.00115 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99970 * 179.97438 * 11 10 9 14 14 C 1.34783 * 119.99813 * 142.19769 * 9 7 2 15 15 O 1.21284 * 119.99954 * 0.02562 * 14 9 7 16 16 C 1.50703 * 119.99682 * 180.02562 * 14 9 7 17 17 H 1.08993 * 115.56286 * 325.68981 * 16 14 9 18 18 C 1.52999 * 117.49730 * 111.38468 * 16 14 9 19 19 C 1.52992 * 60.00304 * 107.48568 * 18 16 14 20 20 F 1.39903 * 117.50232 * 107.48733 * 19 18 16 21 21 F 1.39904 * 117.49835 * 252.51145 * 19 18 16 22 22 H 0.96994 * 119.99870 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47424 * 23.20752 * 10 9 7 24 24 H 1.09009 * 109.47031 * 143.20884 * 10 9 7 25 25 H 0.96700 * 116.99845 * 180.02562 * 13 11 10 26 26 H 1.08997 * 117.50135 * 359.97438 * 18 16 14 27 27 H 1.09005 * 117.51772 * 214.97031 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3692 2.1195 -1.3924 5 1 1.5145 2.6129 0.8227 6 1 3.6032 1.4071 0.5698 7 6 2.0089 -1.2033 -0.0005 8 1 1.5250 -2.1064 0.3405 9 7 3.3089 -1.2440 -0.4341 10 6 3.7277 -0.4221 -1.5722 11 6 3.7009 -1.2534 -2.8289 12 8 3.3660 -2.4132 -2.7791 13 8 4.0482 -0.7051 -4.0039 14 6 4.2018 -2.0401 0.1869 15 8 3.8550 -2.7208 1.1289 16 6 5.6309 -2.0845 -0.2893 17 1 5.7722 -1.9717 -1.3641 18 6 6.7005 -1.4914 0.6299 19 6 6.5959 -3.0079 0.4571 20 9 7.5920 -3.6430 -0.2924 21 9 6.0839 -3.7465 1.5293 22 1 -0.4850 0.8400 0.0004 23 1 3.0470 0.4223 -1.6806 24 1 4.7394 -0.0538 -1.4017 25 1 4.0151 -1.2777 -4.7824 26 1 6.3706 -1.0688 1.5789 27 1 7.5458 -0.9884 0.1601 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182909.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:45 Heat of formation + Delta-G solvation = -167.600382 kcal Electronic energy + Delta-G solvation = -18894.166508 eV Core-core repulsion = 15290.293082 eV Total energy + Delta-G solvation = -3603.873426 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.064 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.39462 -47.01296 -40.14234 -38.79820 -35.98195 -35.43672 -34.71307 -32.23748 -28.20138 -26.15746 -23.17780 -22.29265 -21.80738 -19.18604 -17.87927 -17.85314 -17.42389 -16.49236 -16.32247 -15.92977 -15.61727 -15.22934 -15.01508 -14.13371 -13.75027 -13.65346 -13.41988 -13.12411 -12.92637 -12.74384 -12.44330 -12.34697 -11.89020 -11.24277 -11.16686 -10.86078 -10.75979 -10.23473 -10.08388 -9.88065 -9.30339 -8.81902 -8.06798 -6.55217 -4.16075 2.54584 2.73950 2.89151 3.08745 3.11419 3.13260 3.30572 3.62534 3.95480 4.13920 4.45345 4.52946 4.81773 4.97098 5.18271 5.27813 5.42860 5.56776 5.64749 5.78050 5.89025 6.77193 7.29076 8.04995 8.21036 8.29126 8.73727 9.08054 9.46120 10.56105 Molecular weight = 249.06amu Principal moments of inertia in cm(-1) A = 0.022466 B = 0.009739 C = 0.008218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.001442 B = 2874.484551 C = 3406.411068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.060 3.940 3 Si 0.862 3.138 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.316 4.316 8 H 0.111 0.889 9 N -0.442 5.442 10 C 0.097 3.903 11 C 0.453 3.547 12 O -0.491 6.491 13 O -0.525 6.525 14 C 0.505 3.495 15 O -0.527 6.527 16 C -0.189 4.189 17 H 0.131 0.869 18 C -0.153 4.153 19 C 0.224 3.776 20 F -0.164 7.164 21 F -0.137 7.137 22 H 0.277 0.723 23 H 0.117 0.883 24 H 0.107 0.893 25 H 0.402 0.598 26 H 0.128 0.872 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.633 3.380 -5.061 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.147 4.147 3 Si 0.688 3.312 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.443 4.443 8 H 0.129 0.871 9 N -0.164 5.164 10 C -0.029 4.029 11 C 0.293 3.707 12 O -0.376 6.376 13 O -0.337 6.337 14 C 0.292 3.708 15 O -0.405 6.405 16 C -0.212 4.212 17 H 0.148 0.852 18 C -0.192 4.192 19 C 0.187 3.813 20 F -0.144 7.144 21 F -0.118 7.118 22 H 0.088 0.912 23 H 0.134 0.866 24 H 0.124 0.876 25 H 0.261 0.739 26 H 0.147 0.853 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.151 2.989 -4.161 13.187 hybrid contribution 0.275 0.388 -0.845 0.970 sum 12.427 3.377 -5.006 13.816 Atomic orbital electron populations 1.69745 1.06177 1.28233 1.44508 1.25405 0.95271 0.98233 0.95769 0.87158 0.81695 0.83978 0.78404 1.19655 1.20409 1.18063 1.19085 0.84191 0.97117 1.43908 0.87134 1.43249 1.09959 1.40064 1.23165 1.21688 1.03429 0.94685 0.83129 1.24621 0.73266 0.87684 0.85173 1.90740 1.42086 1.18399 1.86375 1.84570 1.81545 1.48890 1.18659 1.18902 0.83913 0.84073 0.83906 1.90666 1.78861 1.42595 1.28422 1.23733 0.94138 1.02659 1.00690 0.85155 1.24275 0.99829 0.92113 1.02960 1.19499 0.89852 0.85902 0.86059 1.93006 1.61268 1.84302 1.75865 1.93116 1.86261 1.78578 1.53809 0.91208 0.86563 0.87566 0.73938 0.85344 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.78 13.96 55.50 0.77 -23.01 15 2 C 0.06 1.60 5.28 -17.47 -0.09 1.50 15 3 Si 0.86 18.48 24.97 -169.99 -4.25 14.24 15 4 H -0.27 -5.29 6.71 56.52 0.38 -4.91 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 7 C -0.32 -8.76 9.36 -14.94 -0.14 -8.90 15 8 H 0.11 3.51 7.92 -52.49 -0.42 3.09 15 9 N -0.44 -10.44 1.74 -116.09 -0.20 -10.65 15 10 C 0.10 1.83 4.22 -5.19 -0.02 1.81 15 11 C 0.45 8.23 7.49 36.01 0.27 8.50 15 12 O -0.49 -10.78 17.02 -18.75 -0.32 -11.10 15 13 O -0.52 -7.09 13.42 -39.25 -0.53 -7.61 15 14 C 0.50 11.67 7.16 -10.98 -0.08 11.59 15 15 O -0.53 -14.25 15.01 5.55 0.08 -14.17 15 16 C -0.19 -3.28 4.80 -91.77 -0.44 -3.72 15 17 H 0.13 1.97 6.69 -51.93 -0.35 1.62 15 18 C -0.15 -2.04 10.20 -26.74 -0.27 -2.31 15 19 C 0.22 3.77 5.19 -26.73 -0.14 3.63 15 20 F -0.16 -2.57 17.60 2.25 0.04 -2.53 15 21 F -0.14 -2.75 15.71 2.25 0.04 -2.71 15 22 H 0.28 7.08 8.31 -40.82 -0.34 6.75 15 23 H 0.12 2.27 3.61 -51.93 -0.19 2.08 15 24 H 0.11 1.55 7.04 -51.92 -0.37 1.18 15 25 H 0.40 3.61 9.10 45.56 0.41 4.03 15 26 H 0.13 1.71 8.14 -51.93 -0.42 1.29 15 27 H 0.13 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 253.01 15.07 3.81 3.81 Total: -1.00 -33.83 253.01 -2.37 -36.20 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -0.90 Total: 5.43 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -0.91 Total: 12.10 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.57 Total: -33.65 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.76 Total: -32.88 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.08 Total: -5.24 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -4.25 Total: 14.24 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.83 -2.37 -36.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182909.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.401 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds