Wall clock time and date at job start Thu Apr 9 2020 12:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31376 * 1 3 3 Si 1.86799 * 120.00161 * 2 1 4 4 H 1.48489 * 109.47485 * 240.00320 * 3 2 1 5 5 H 1.48503 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46971 * 119.99710 * 3 2 1 7 7 C 1.39039 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99765 * 179.97438 * 7 2 1 9 9 N 1.36797 * 120.00357 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00028 * 180.02562 * 9 7 2 11 11 O 1.21768 * 120.00255 * 359.97438 * 10 9 7 12 12 C 1.46391 * 119.99781 * 180.02562 * 10 9 7 13 13 C 1.37901 * 125.96528 * 180.02562 * 12 10 9 14 14 C 1.39829 * 106.75953 * 179.79933 * 13 12 10 15 15 C 1.36529 * 107.11004 * 0.34882 * 14 13 12 16 16 C 1.47778 * 125.65156 * 179.90293 * 15 14 13 17 17 N 1.34252 * 126.70639 * 359.74952 * 16 15 14 18 18 N 1.28984 * 107.24407 * 179.97438 * 17 16 15 19 19 N 1.28710 * 109.01318 * 359.97438 * 18 17 16 20 20 H 0.97001 * 125.31635 * 179.97438 * 19 18 17 21 21 N 1.28873 * 109.37680 * 359.97438 * 19 18 17 22 22 O 1.34382 * 108.70137 * 359.64288 * 15 14 13 23 23 H 0.97007 * 120.00000 * 359.97438 * 1 2 3 24 24 H 0.96999 * 120.00205 * 0.02562 * 9 7 2 25 25 H 1.08007 * 126.62047 * 0.04683 * 13 12 10 26 26 H 1.08001 * 126.44988 * 180.25137 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.1015 1.6964 -1.2124 5 1 1.2828 2.7464 0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0089 -1.2042 -0.0005 8 1 3.0889 -1.2042 -0.0010 9 7 1.3249 -2.3889 -0.0005 10 6 1.9987 -3.5561 -0.0005 11 8 3.2164 -3.5561 -0.0010 12 6 1.2667 -4.8238 -0.0011 13 6 1.8283 -6.0833 -0.0007 14 6 0.7697 -6.9968 0.0032 15 6 -0.3869 -6.2713 -0.0030 16 6 -1.7547 -6.8309 -0.0038 17 7 -2.0898 -8.1309 -0.0033 18 7 -3.3781 -8.1936 -0.0037 19 7 -3.8561 -6.9986 -0.0039 20 1 -4.7993 -6.7719 -0.0046 21 7 -2.8861 -6.1501 -0.0030 22 8 -0.0756 -4.9641 -0.0024 23 1 -0.4850 0.8401 0.0004 24 1 0.3549 -2.3889 -0.0005 25 1 2.8824 -6.3187 0.0009 26 1 0.8514 -8.0737 0.0083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609496046.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:49 Heat of formation + Delta-G solvation = 104.287199 kcal Electronic energy + Delta-G solvation = -16830.337058 eV Core-core repulsion = 13721.235500 eV Total energy + Delta-G solvation = -3109.101558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.52843 -42.15747 -38.04649 -34.56255 -34.31004 -33.50575 -32.63864 -31.50047 -29.43161 -25.85043 -24.65076 -24.16341 -21.66281 -21.33052 -19.58502 -19.23469 -18.32267 -17.34461 -17.28396 -16.16444 -15.83007 -14.90663 -14.19627 -14.07440 -13.34890 -13.33590 -12.78489 -12.64017 -12.52037 -12.43790 -11.74195 -11.51791 -11.24896 -11.21019 -11.12950 -10.60850 -10.44745 -9.79051 -9.64250 -8.89844 -8.29468 -8.05022 -6.72145 -4.03597 0.77254 1.15926 2.07041 2.13807 2.69891 2.95269 3.12535 3.13843 3.17817 3.83616 3.97074 4.08215 4.37585 4.76532 5.11032 5.17947 5.22414 5.34351 5.73210 6.00910 6.13021 6.23975 6.34338 6.68230 7.17118 7.26970 7.77812 8.03448 8.31034 8.86180 9.21346 9.74542 10.42794 Molecular weight = 249.06amu Principal moments of inertia in cm(-1) A = 0.032215 B = 0.005172 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.947295 B = 5412.912788 C = 6272.017614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.027 3.973 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.296 4.296 8 H 0.114 0.886 9 N -0.520 5.520 10 C 0.487 3.513 11 O -0.578 6.578 12 C 0.016 3.984 13 C -0.175 4.175 14 C -0.130 4.130 15 C 0.025 3.975 16 C 0.263 3.737 17 N -0.257 5.257 18 N -0.050 5.050 19 N -0.226 5.226 20 H 0.476 0.524 21 N -0.281 5.281 22 O -0.148 6.148 23 H 0.280 0.720 24 H 0.400 0.600 25 H 0.163 0.837 26 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.756 -10.145 0.000 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.179 4.179 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.426 4.426 8 H 0.131 0.869 9 N -0.153 5.153 10 C 0.274 3.726 11 O -0.466 6.466 12 C -0.040 4.040 13 C -0.196 4.196 14 C -0.153 4.153 15 C -0.029 4.029 16 C -0.016 4.016 17 N -0.132 5.132 18 N -0.045 5.045 19 N -0.073 5.073 20 H 0.331 0.669 21 N -0.134 5.134 22 O -0.042 6.042 23 H 0.091 0.909 24 H 0.235 0.765 25 H 0.181 0.819 26 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.796 -10.158 0.001 12.805 hybrid contribution -0.604 1.171 0.001 1.317 sum -8.400 -8.987 0.002 12.301 Atomic orbital electron populations 1.69620 1.06317 1.29399 1.45860 1.25527 0.95744 1.00515 0.96069 0.85751 0.78836 0.79240 0.79562 1.19338 1.20608 1.19344 1.19899 0.93989 0.81833 1.46869 0.86870 1.41973 1.10007 1.04720 1.58557 1.16045 0.86531 0.80764 0.89269 1.90729 1.11378 1.84905 1.59539 1.23586 0.78313 0.97915 1.04210 1.21934 1.00721 0.89853 1.07139 1.21633 0.89808 1.00847 1.02998 1.17890 0.88214 0.82007 1.14812 1.21966 0.90674 0.86851 1.02099 1.76133 1.02289 1.16544 1.18233 1.78874 1.04093 1.06528 1.15039 1.47688 1.11747 1.01816 1.46030 0.66914 1.75295 0.95746 1.20779 1.21538 1.84159 1.24790 1.24768 1.70474 0.90945 0.76510 0.81894 0.82098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.80 13.05 55.50 0.72 -22.08 15 2 C 0.03 0.69 5.50 -17.45 -0.10 0.60 15 3 Si 0.94 19.78 29.55 -169.99 -5.02 14.75 15 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 7 C -0.30 -7.97 9.67 -15.04 -0.15 -8.11 15 8 H 0.11 3.11 7.15 -52.49 -0.38 2.73 15 9 N -0.52 -13.42 5.27 -12.26 -0.06 -13.48 15 10 C 0.49 12.07 7.73 -12.98 -0.10 11.97 15 11 O -0.58 -15.74 16.44 5.13 0.08 -15.66 15 12 C 0.02 0.33 7.16 -36.43 -0.26 0.07 15 13 C -0.18 -3.10 10.66 -39.11 -0.42 -3.52 15 14 C -0.13 -2.03 10.78 -39.60 -0.43 -2.45 15 15 C 0.03 0.44 7.24 -36.30 -0.26 0.18 15 16 C 0.26 4.13 8.20 -156.22 -1.28 2.85 15 17 N -0.26 -3.72 12.53 32.07 0.40 -3.32 15 18 N -0.05 -0.60 13.46 60.35 0.81 0.21 15 19 N -0.23 -2.29 7.89 60.35 0.48 -1.82 15 20 H 0.48 2.31 8.96 -340.32 -3.05 -0.75 15 21 N -0.28 -4.04 12.41 32.08 0.40 -3.64 15 22 O -0.15 -2.96 10.41 3.66 0.04 -2.92 15 23 H 0.28 6.83 8.31 -40.82 -0.34 6.49 15 24 H 0.40 10.12 7.64 -40.82 -0.31 9.81 15 25 H 0.16 2.64 8.06 -52.48 -0.42 2.22 15 26 H 0.16 2.00 8.06 -52.49 -0.42 1.57 15 LS Contribution 257.46 15.07 3.88 3.88 Total: -1.00 -31.14 257.46 -4.98 -36.12 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.72 Total: 6.36 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.99 Total: 1.59 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 2.75 Total: -44.12 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.12 Total: -18.58 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.14 -4.98 -36.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496046.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.405 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds