Wall clock time and date at job start Thu Apr 9 2020 12:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39835 * 120.05158 * 33.80633 * 3 2 1 5 5 C 1.37635 * 119.96963 * 180.02562 * 4 3 2 6 6 C 1.39314 * 120.06488 * 359.97438 * 5 4 3 7 7 N 1.39111 * 119.94645 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99593 * 24.91632 * 7 6 5 9 9 O 1.21801 * 120.00210 * 5.52075 * 8 7 6 10 10 C 1.41590 * 119.99730 * 185.51818 * 8 7 6 11 11 H 1.07999 * 119.99836 * 0.02562 * 10 8 7 12 12 C 1.40144 * 119.99686 * 179.97438 * 10 8 7 13 13 N 1.30625 * 120.00124 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99474 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47345 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46822 * 120.00326 * 14 12 10 17 17 H 1.48499 * 109.47014 * 240.00171 * 14 12 10 18 18 C 1.39427 * 120.10480 * 0.04627 * 6 5 4 19 19 Cl 1.73606 * 119.98401 * 179.97438 * 18 6 5 20 20 C 1.37762 * 120.03549 * 359.67406 * 18 6 5 21 21 H 4.52129 * 14.05432 * 0.02562 * 4 2 1 22 22 H 1.08004 * 120.01835 * 0.02562 * 4 3 2 23 23 H 1.07997 * 119.96403 * 180.02562 * 5 4 3 24 24 H 0.96994 * 120.00291 * 204.91026 * 7 6 5 25 25 H 0.97006 * 119.99489 * 179.97438 * 13 12 10 26 26 H 1.07995 * 120.04272 * 180.32529 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 -1.0048 -0.6734 5 6 4.6831 -1.0028 -0.6719 6 6 5.3789 0.0002 -0.0005 7 7 6.7700 0.0000 -0.0010 8 6 7.4434 -0.6060 -0.9988 9 8 6.8382 -1.0656 -1.9507 10 6 8.8544 -0.7084 -0.9406 11 1 9.3909 -0.3012 -0.0964 12 6 9.5545 -1.3391 -1.9779 13 7 8.9055 -1.8320 -2.9987 14 14 11.4160 -1.4748 -1.9006 15 1 11.9071 -0.8414 -0.6505 16 1 11.8090 -2.9067 -1.9182 17 1 12.0117 -0.7835 -3.0722 18 6 4.6831 1.0038 0.6723 19 17 5.5533 2.2518 1.5085 20 6 3.3055 1.0092 0.6686 21 1 -1.0500 -0.0005 -0.0009 22 1 2.7682 -1.7825 -1.1946 23 1 5.2242 -1.7791 -1.1924 24 1 7.2553 0.4362 0.7167 25 1 9.3902 -2.2682 -3.7169 26 1 2.7665 1.7895 1.1853 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636515566.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:01 Heat of formation + Delta-G solvation = 31.635687 kcal Electronic energy + Delta-G solvation = -14781.904356 eV Core-core repulsion = 12045.776055 eV Total energy + Delta-G solvation = -2736.128302 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 249.030 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.50560 -37.38700 -36.13861 -34.17154 -32.78256 -32.32478 -30.37122 -28.90089 -26.58252 -23.04756 -22.32027 -20.17923 -18.72364 -17.77193 -16.54779 -15.81213 -15.53645 -14.86512 -14.15699 -14.00919 -13.60356 -13.18483 -12.87030 -12.55036 -12.04649 -11.75839 -11.46336 -11.34674 -11.22365 -10.76366 -10.64524 -10.55844 -10.38244 -10.25548 -9.36453 -8.96907 -8.48383 -7.82403 -7.07838 -6.49740 -5.03586 1.32332 1.66914 2.45476 2.97407 2.98226 3.07579 3.12150 3.25980 3.88794 4.17272 4.38304 4.43141 4.52936 5.20702 5.42904 5.57075 5.72828 5.94542 6.03215 6.24487 6.54499 6.74604 6.87942 7.10946 7.19337 7.66987 7.72530 7.87318 7.96790 8.67973 9.07786 10.22786 10.41689 Molecular weight = 249.03amu Principal moments of inertia in cm(-1) A = 0.032221 B = 0.005965 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.799223 B = 4693.108302 C = 5499.299456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.117 4.117 3 C -0.054 4.054 4 C -0.062 4.062 5 C -0.136 4.136 6 C 0.228 3.772 7 N -0.685 5.685 8 C 0.538 3.462 9 O -0.562 6.562 10 C -0.531 4.531 11 H 0.073 0.927 12 C 0.087 3.913 13 N -0.742 5.742 14 Si 0.915 3.085 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.273 1.273 18 C -0.107 4.107 19 Cl -0.079 7.079 20 C -0.056 4.056 21 H 0.220 0.780 22 H 0.126 0.874 23 H 0.167 0.833 24 H 0.397 0.603 25 H 0.274 0.726 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 3.264 6.455 10.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.117 4.117 3 C -0.056 4.056 4 C -0.081 4.081 5 C -0.157 4.157 6 C 0.124 3.876 7 N -0.325 5.325 8 C 0.349 3.651 9 O -0.446 6.446 10 C -0.566 4.566 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.369 5.369 14 Si 0.739 3.261 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.198 1.198 18 C -0.138 4.138 19 Cl -0.050 7.050 20 C -0.075 4.075 21 H 0.236 0.764 22 H 0.144 0.856 23 H 0.184 0.816 24 H 0.232 0.768 25 H 0.085 0.915 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.412 2.913 5.638 9.757 hybrid contribution 1.006 0.412 0.479 1.188 sum -6.406 3.325 6.117 9.460 Atomic orbital electron populations 1.24672 0.95586 1.01101 1.02012 1.20040 0.91824 1.00069 0.99775 1.15677 0.86283 0.98611 1.05038 1.21171 0.93817 0.96782 0.96315 1.21658 0.93113 0.99505 1.01420 1.17985 0.85775 0.90912 0.92972 1.44360 1.02177 1.57830 1.28120 1.17076 0.88601 0.78905 0.80525 1.90614 1.69402 1.51424 1.33126 1.20071 0.90867 1.38380 1.07287 0.90881 1.25781 1.00686 0.93102 0.94109 1.70002 1.37164 1.23984 1.05761 0.86185 0.81880 0.78736 0.79335 1.18451 1.19800 1.19824 1.20441 0.92020 0.93674 1.07664 1.98314 1.76943 1.52494 1.77246 1.20619 0.91097 0.97693 0.98111 0.76368 0.85585 0.81552 0.76805 0.91461 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.68 19.25 29.55 0.57 -2.11 15 2 C -0.12 -1.78 13.24 -38.84 -0.51 -2.29 15 3 C -0.05 -0.91 5.74 -106.80 -0.61 -1.52 15 4 C -0.06 -1.09 9.74 -39.20 -0.38 -1.47 15 5 C -0.14 -2.81 8.69 -39.40 -0.34 -3.16 15 6 C 0.23 4.71 6.43 -83.71 -0.54 4.17 15 7 N -0.69 -15.22 5.15 -12.41 -0.06 -15.28 15 8 C 0.54 14.36 7.36 -14.98 -0.11 14.25 15 9 O -0.56 -16.62 12.01 5.10 0.06 -16.56 15 10 C -0.53 -13.97 9.30 -37.59 -0.35 -14.32 15 11 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 12 C 0.09 2.25 5.50 -17.35 -0.10 2.15 15 13 N -0.74 -20.54 11.73 55.56 0.65 -19.89 15 14 Si 0.91 18.73 29.56 -169.99 -5.02 13.70 15 15 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 18 C -0.11 -1.92 6.34 -39.31 -0.25 -2.17 15 19 Cl -0.08 -1.25 27.77 -51.86 -1.44 -2.69 15 20 C -0.06 -0.92 9.52 -39.18 -0.37 -1.29 15 21 H 0.22 1.74 7.80 -54.09 -0.42 1.32 15 22 H 0.13 1.95 8.06 -52.48 -0.42 1.53 15 23 H 0.17 3.91 5.76 -52.49 -0.30 3.61 15 24 H 0.40 7.89 7.70 -40.82 -0.31 7.57 15 25 H 0.27 6.83 8.29 -40.82 -0.34 6.49 15 26 H 0.13 1.81 8.06 -52.49 -0.42 1.39 15 LS Contribution 262.15 15.07 3.95 3.95 Total: -1.00 -29.93 262.15 -6.29 -36.22 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -1.43 Total: 8.30 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -3.00 Total: -7.76 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.59 Total: -35.17 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.06 Total: -16.56 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.44 Total: -2.69 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.93 -6.29 -36.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636515566.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.860 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds