Wall clock time and date at job start Thu Apr 9 2020 12:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47205 * 2 1 4 4 H 1.08993 * 109.47520 * 305.64032 * 3 2 1 5 5 C 1.50701 * 109.47004 * 185.63803 * 3 2 1 6 6 H 1.08008 * 119.99741 * 239.99607 * 5 3 2 7 7 C 1.37871 * 120.00420 * 59.72804 * 5 3 2 8 8 N 1.31521 * 119.99771 * 0.27129 * 7 5 3 9 9 Si 1.86804 * 120.00476 * 180.27518 * 7 5 3 10 10 H 1.48494 * 109.46773 * 59.99731 * 9 7 5 11 11 H 1.48492 * 109.46932 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46700 * 299.99567 * 9 7 5 13 13 N 1.46903 * 109.47088 * 65.63844 * 3 2 1 14 14 C 1.46901 * 111.00049 * 205.21351 * 13 3 2 15 15 C 1.50700 * 109.46918 * 185.20645 * 14 13 3 16 16 C 1.38649 * 120.78890 * 269.71411 * 15 14 13 17 17 C 1.38204 * 119.16094 * 179.79787 * 16 15 14 18 18 C 1.50699 * 119.61862 * 180.20906 * 17 16 15 19 19 N 1.31873 * 120.76474 * 0.49391 * 17 16 15 20 20 C 1.31867 * 121.72660 * 359.74111 * 19 17 16 21 21 C 1.50693 * 119.62167 * 180.02562 * 20 19 17 22 22 C 1.38214 * 120.76215 * 0.02562 * 20 19 17 23 23 H 1.09005 * 109.46783 * 54.41941 * 1 2 3 24 24 H 1.09003 * 109.46880 * 174.41244 * 1 2 3 25 25 H 1.08998 * 109.47439 * 294.41201 * 1 2 3 26 26 H 1.08998 * 109.47317 * 239.99458 * 2 1 3 27 27 H 1.09009 * 109.46777 * 120.00001 * 2 1 3 28 28 H 0.96997 * 120.00370 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00007 * 329.17279 * 13 3 2 30 30 H 1.09001 * 109.47019 * 305.20659 * 14 13 3 31 31 H 1.08999 * 109.47063 * 65.20902 * 14 13 3 32 32 H 1.07994 * 120.42117 * 0.02562 * 16 15 14 33 33 H 1.08995 * 109.47072 * 270.27929 * 18 17 16 34 34 H 1.09002 * 109.47184 * 30.28266 * 18 17 16 35 35 H 1.09003 * 109.47145 * 150.27719 * 18 17 16 36 36 H 1.09004 * 109.47377 * 270.02132 * 21 20 19 37 37 H 1.09004 * 109.47115 * 30.01877 * 21 20 19 38 38 H 1.08994 * 109.47527 * 150.02078 * 21 20 19 39 39 H 1.08000 * 120.41416 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5966 1.9846 -0.8351 5 6 3.5405 1.4447 -0.1396 6 1 4.1540 1.8865 0.6318 7 6 4.1306 0.8779 -1.2493 8 7 3.3836 0.3400 -2.1887 9 14 5.9909 0.8739 -1.4187 10 1 6.5901 0.1363 -0.2776 11 1 6.3706 0.2094 -2.6912 12 1 6.4906 2.2722 -1.4215 13 7 1.6646 2.0946 1.2617 14 6 1.5791 3.5517 1.0961 15 6 1.3187 4.1948 2.4339 16 6 0.0229 4.4132 2.8762 17 6 -0.1771 5.0017 4.1106 18 6 -1.5812 5.2395 4.6036 19 7 0.8465 5.3626 4.8596 20 6 2.0919 5.1747 4.4691 21 6 3.2259 5.6050 5.3634 22 6 2.3693 4.5877 3.2489 23 1 -0.3633 0.5980 -0.8359 24 1 -0.3633 -1.0228 -0.1001 25 1 -0.3634 0.4247 0.9358 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.7986 -0.0591 -2.9693 29 1 0.7985 1.7197 1.6188 30 1 2.5181 3.9268 0.6892 31 1 0.7649 3.7925 0.4126 32 1 -0.8194 4.1237 2.2655 33 1 -1.9195 6.2225 4.2762 34 1 -2.2430 4.4739 4.1986 35 1 -1.5965 5.1939 5.6925 36 1 3.4991 6.6350 5.1338 37 1 2.9133 5.5357 6.4054 38 1 4.0856 4.9557 5.1981 39 1 3.3914 4.4369 2.9345 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658144281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:23:16 Heat of formation + Delta-G solvation = 13.750147 kcal Electronic energy + Delta-G solvation = -17821.197152 eV Core-core repulsion = 15148.802056 eV Total energy + Delta-G solvation = -2672.395096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.14801 -36.54401 -33.78944 -33.55858 -31.89002 -30.43121 -28.98052 -26.88118 -26.58478 -24.75172 -22.60565 -21.69332 -20.28464 -19.55792 -16.55786 -16.19193 -15.83578 -14.95849 -14.84995 -14.55679 -14.18999 -13.86357 -13.22460 -13.09202 -12.93327 -12.61401 -12.43400 -12.40728 -12.05004 -11.80456 -11.71225 -11.59409 -11.20670 -10.95408 -10.84851 -10.67246 -9.99569 -9.88445 -9.69526 -9.32974 -9.18611 -9.04504 -8.54060 -8.37304 -7.31157 -5.99602 -4.04174 1.33808 1.53595 3.32258 3.36743 3.39899 3.93223 4.34389 4.42608 4.83496 4.89049 5.27196 5.28229 5.37567 5.47905 5.56043 5.57992 5.63932 5.65921 5.69947 5.74906 5.95675 6.06805 6.12490 6.13351 6.19190 6.32234 6.39815 6.41903 6.73705 6.81133 6.98607 7.03489 7.13780 7.42790 7.73930 7.87434 8.21571 8.21665 8.34582 8.68657 9.02911 9.60886 11.05746 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.005646 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.968339 B = 4957.831992 C = 5937.408982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.679 5.679 14 C 0.101 3.899 15 C -0.014 4.014 16 C -0.178 4.178 17 C 0.123 3.877 18 C -0.099 4.099 19 N -0.496 5.496 20 C 0.123 3.877 21 C -0.100 4.100 22 C -0.156 4.156 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.034 0.966 26 H 0.101 0.899 27 H 0.041 0.959 28 H 0.260 0.740 29 H 0.318 0.682 30 H 0.087 0.913 31 H 0.028 0.972 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.169 7.846 9.677 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.029 4.029 15 C -0.023 4.023 16 C -0.198 4.198 17 C -0.015 4.015 18 C -0.157 4.157 19 N -0.207 5.207 20 C -0.014 4.014 21 C -0.158 4.158 22 C -0.176 4.176 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.046 0.954 32 H 0.145 0.855 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.648 8.140 10.513 14.446 hybrid contribution 0.310 -0.444 -1.594 1.684 sum -5.337 7.696 8.919 12.933 Atomic orbital electron populations 1.21884 0.99589 0.99804 0.99498 1.21770 0.91250 1.00218 1.03184 1.19188 0.95611 0.90038 0.83953 0.97955 1.21156 0.91141 1.36697 1.04399 0.92101 1.24954 0.98140 0.95554 0.95810 1.69858 1.34812 1.39252 1.09677 0.86598 0.85689 0.78151 0.77177 1.20286 1.21436 1.20409 1.60714 1.36257 1.00781 1.33273 1.20848 1.01345 0.90620 0.90054 1.20530 0.92445 0.92705 0.96572 1.21827 0.97501 1.02946 0.97553 1.21114 0.94989 0.94505 0.90867 1.20653 0.90615 1.02215 1.02201 1.67261 0.99062 1.19250 1.35148 1.21195 0.92172 0.94797 0.93228 1.20668 0.94679 1.01630 0.98796 1.21879 1.00610 1.00312 0.94786 0.93866 0.94304 0.94666 0.88101 0.93997 0.92980 0.86451 0.89436 0.95367 0.85451 0.90834 0.90934 0.90811 0.90787 0.90862 0.90647 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.65 37.16 0.36 -2.51 16 2 C -0.13 -2.92 5.36 -26.73 -0.14 -3.07 16 3 C 0.22 5.34 2.02 -68.86 -0.14 5.20 16 4 H 0.00 0.08 7.85 -51.93 -0.41 -0.33 16 5 C -0.50 -13.39 8.55 -34.44 -0.29 -13.69 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.12 11.28 55.43 0.63 -24.50 16 9 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.68 -14.20 6.26 -109.22 -0.68 -14.88 16 14 C 0.10 1.87 5.63 -4.98 -0.03 1.85 16 15 C -0.01 -0.24 5.48 -104.32 -0.57 -0.81 16 16 C -0.18 -2.64 9.45 -39.44 -0.37 -3.01 16 17 C 0.12 1.76 6.78 -82.59 -0.56 1.20 16 18 C -0.10 -1.05 10.17 36.01 0.37 -0.68 16 19 N -0.50 -7.70 10.19 -5.74 -0.06 -7.76 16 20 C 0.12 1.84 6.78 -82.59 -0.56 1.28 16 21 C -0.10 -1.14 10.17 36.00 0.37 -0.78 16 22 C -0.16 -2.49 9.45 -39.44 -0.37 -2.86 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.60 6.65 -51.93 -0.35 0.26 16 26 H 0.10 2.64 5.93 -51.93 -0.31 2.33 16 27 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.32 6.19 6.64 -39.29 -0.26 5.92 16 30 H 0.09 1.75 7.88 -51.93 -0.41 1.34 16 31 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 321.79 15.07 4.85 4.85 Total: -1.00 -29.01 321.79 -8.67 -37.68 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.34 Total: 4.85 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.05 Total: -16.43 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.12 Total: -47.13 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.01 -8.67 -37.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658144281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.430 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds